Wall clock time and date at job start Tue Mar 31 2020 23:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.52999 * 109.47276 * 269.99459 * 3 2 1 5 5 C 1.52997 * 109.47480 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47227 * 180.02562 * 5 4 3 7 7 C 1.46904 * 111.00014 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47250 * 179.97438 * 7 6 5 9 9 O 1.21291 * 119.99716 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99926 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99850 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00175 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00259 * 180.02562 * 11 10 8 14 14 N 1.31421 * 119.99755 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00236 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47202 * 59.99757 * 15 13 11 17 17 H 1.48504 * 109.47001 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46768 * 299.99701 * 15 13 11 19 19 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 20 20 O 1.21274 * 119.99897 * 179.73022 * 19 2 1 21 21 C 1.50695 * 119.99635 * 0.02562 * 19 2 1 22 22 C 1.50707 * 109.47011 * 180.02562 * 21 19 2 23 23 C 1.33381 * 125.20456 * 89.99528 * 22 21 19 24 24 C 1.38426 * 114.92297 * 179.97438 * 23 22 21 25 25 C 1.33389 * 114.92012 * 0.02562 * 24 23 22 26 26 S 1.75882 * 125.20014 * 269.69727 * 22 21 19 27 27 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 28 28 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 29 29 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 30 30 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 31 31 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 32 32 H 1.08998 * 109.47074 * 300.00425 * 4 3 2 33 33 H 1.09007 * 109.46853 * 59.99785 * 4 3 2 34 34 H 1.08994 * 109.47282 * 300.01107 * 5 4 3 35 35 H 1.09013 * 109.46695 * 60.00379 * 5 4 3 36 36 H 1.00895 * 111.00065 * 56.05426 * 6 5 4 37 37 H 1.08991 * 109.46964 * 300.00263 * 7 6 5 38 38 H 1.09004 * 109.46785 * 60.00547 * 7 6 5 39 39 H 0.97003 * 120.00284 * 0.02562 * 10 8 7 40 40 H 0.96999 * 119.99667 * 179.97438 * 14 13 11 41 41 H 1.09005 * 109.47403 * 300.00056 * 21 19 2 42 42 H 1.09002 * 109.47422 * 60.00295 * 21 19 2 43 43 H 1.08003 * 122.54135 * 359.96556 * 23 22 21 44 44 H 1.07993 * 122.54049 * 180.02562 * 24 23 22 45 45 H 1.07994 * 125.20424 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4527 1.7103 -1.4425 5 6 3.2171 3.0356 -1.4425 6 7 3.4615 3.4599 -2.8275 7 6 4.1958 4.7317 -2.8667 8 6 4.4280 5.1336 -4.3004 9 8 4.0214 4.4302 -5.2009 10 7 5.0866 6.2753 -4.5819 11 6 5.2974 6.6413 -5.8862 12 1 4.9354 6.0149 -6.6881 13 6 5.9769 7.8180 -6.1766 14 7 6.4170 8.5805 -5.2008 15 14 6.2635 8.3170 -7.9537 16 1 4.9563 8.4790 -8.6394 17 1 7.0065 9.6022 -7.9933 18 1 7.0562 7.2661 -8.6412 19 6 2.1389 -1.1673 0.0005 20 8 3.3516 -1.1673 -0.0044 21 6 1.3853 -2.4723 0.0005 22 6 2.3646 -3.6178 0.0018 23 6 2.8634 -4.2018 1.0923 24 6 3.7482 -5.2376 0.8464 25 6 3.9682 -5.4944 -0.4439 26 16 3.0187 -4.3941 -1.4345 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5138 32 1 3.0417 0.9506 -1.9562 33 1 1.5002 1.8406 -1.9564 34 1 2.6278 3.7950 -0.9288 35 1 4.1696 2.9056 -0.9285 36 1 2.5970 3.5252 -3.3436 37 1 3.6137 5.5029 -2.3624 38 1 5.1552 4.6129 -2.3631 39 1 5.4115 6.8381 -3.8617 40 1 6.8917 9.4018 -5.4035 41 1 0.7582 -2.5298 0.8903 42 1 0.7590 -2.5302 -0.8897 43 1 2.5974 -3.8900 2.0915 44 1 4.2243 -5.7955 1.6391 45 1 4.6249 -6.2637 -0.8224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733081527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:59 Heat of formation + Delta-G solvation = -62.121723 kcal Electronic energy + Delta-G solvation = -25415.790989 eV Core-core repulsion = 21558.940274 eV Total energy + Delta-G solvation = -3856.850715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02898 -40.17634 -38.64439 -37.60408 -36.47569 -35.86022 -33.70080 -33.27575 -32.36333 -29.06677 -28.12086 -27.51371 -26.29162 -24.87021 -23.84541 -22.53291 -21.09960 -20.47874 -19.99976 -19.90562 -18.24203 -18.05612 -17.88861 -17.18812 -16.88941 -16.60845 -16.49362 -16.21739 -15.95465 -15.66271 -15.13973 -15.01963 -14.65578 -14.27623 -14.16458 -13.85093 -13.65623 -13.55315 -13.51479 -13.41224 -13.27896 -13.16726 -12.94599 -12.85911 -12.69311 -12.46177 -12.43046 -12.41837 -12.12634 -11.68926 -11.64843 -11.51831 -10.93520 -10.38372 -10.03588 -9.66622 -9.57804 -9.38429 -9.33430 -8.47825 -5.97047 0.06362 0.73664 1.10621 1.39101 1.40953 1.52213 1.60766 1.79183 2.02895 2.13302 2.28794 2.93263 3.19038 3.51015 3.58488 3.75707 4.00118 4.13379 4.17256 4.24919 4.25596 4.33517 4.41392 4.45716 4.48736 4.52420 4.57131 4.62710 4.69819 4.71062 4.75647 4.83115 5.00336 5.15504 5.19657 5.20907 5.37076 5.39253 5.57104 5.59881 5.87890 6.09609 6.38069 6.40722 6.58477 7.10635 7.18015 7.53905 8.09368 8.69280 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.001624 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.454168 B =17238.149967 C =18122.696087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.616 5.616 3 C 0.121 3.879 4 C -0.119 4.119 5 C 0.066 3.934 6 N -0.691 5.691 7 C 0.066 3.934 8 C 0.436 3.564 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.337 4.337 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.995 3.005 16 H -0.270 1.270 17 H -0.269 1.269 18 H -0.273 1.273 19 C 0.504 3.496 20 O -0.576 6.576 21 C -0.063 4.063 22 C -0.171 4.171 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.218 4.218 26 S 0.068 5.932 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.345 0.655 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.145 0.855 42 H 0.122 0.878 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 -22.803 19.191 33.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.348 5.348 3 C -0.002 4.002 4 C -0.159 4.159 5 C -0.063 4.063 6 N -0.323 5.323 7 C -0.066 4.066 8 C 0.223 3.777 9 O -0.512 6.512 10 N -0.209 5.209 11 C -0.467 4.467 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.195 1.195 17 H -0.193 1.193 18 H -0.199 1.199 19 C 0.293 3.707 20 O -0.455 6.455 21 C -0.104 4.104 22 C -0.289 4.289 23 C -0.168 4.168 24 C -0.173 4.173 25 C -0.354 4.354 26 S 0.332 5.668 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.163 0.837 42 H 0.140 0.860 43 H 0.171 0.829 44 H 0.178 0.822 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.248 -23.263 16.977 32.131 hybrid contribution 0.315 1.080 0.963 1.481 sum -13.934 -22.183 17.940 31.750 Atomic orbital electron populations 1.22165 0.76642 1.04945 1.03763 1.47982 1.08705 1.05188 1.72932 1.21379 0.97870 0.85191 0.95754 1.21757 1.00192 0.96244 0.97666 1.21906 1.00183 0.96090 0.88092 1.60005 1.27467 1.30321 1.14537 1.21525 1.00922 0.91805 0.92398 1.20903 0.82556 0.82155 0.92077 1.90484 1.56321 1.54615 1.49761 1.41923 1.50225 1.20579 1.08169 1.19647 1.35745 1.06521 0.84762 0.90367 1.26070 0.95862 0.95379 1.03963 1.69671 1.38198 1.14490 1.33635 0.84967 0.78591 0.77696 0.76935 1.19543 1.19324 1.19880 1.21093 0.87769 0.86362 0.75505 1.90736 1.16122 1.87873 1.50786 1.20297 0.95982 0.86378 1.07786 1.24096 1.05883 1.03058 0.95835 1.20366 0.99072 0.97605 0.99771 1.20453 1.00373 0.99489 0.96942 1.25892 1.07046 1.05613 0.96835 1.84439 1.41851 1.29614 1.10894 0.90183 0.89835 0.89269 0.87363 0.91662 0.94170 0.90943 0.92774 0.91261 0.83649 0.91038 0.88201 0.76905 0.91231 0.83748 0.85959 0.82922 0.82244 0.80184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 10.24 127.77 1.31 1.69 16 2 N -0.62 -9.24 2.87 -846.77 -2.43 -11.68 16 3 C 0.12 2.08 5.41 86.38 0.47 2.55 16 4 C -0.12 -2.63 5.80 30.59 0.18 -2.45 16 5 C 0.07 1.60 5.68 86.30 0.49 2.09 16 6 N -0.69 -23.18 6.13 -517.93 -3.17 -26.35 16 7 C 0.07 2.36 6.17 85.56 0.53 2.89 16 8 C 0.44 21.54 7.82 87.66 0.69 22.22 16 9 O -0.63 -36.02 15.78 -3.06 -0.05 -36.07 16 10 N -0.57 -30.17 5.29 -306.99 -1.62 -31.79 16 11 C -0.34 -19.60 9.68 84.04 0.81 -18.79 16 12 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 13 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 14 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 15 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 C 0.50 10.15 7.67 87.65 0.67 10.82 16 20 O -0.58 -17.74 15.61 -3.01 -0.05 -17.79 16 21 C -0.06 -0.80 4.75 29.10 0.14 -0.66 16 22 C -0.17 -3.07 5.00 24.59 0.12 -2.95 16 23 C -0.14 -2.30 10.05 21.22 0.21 -2.09 16 24 C -0.14 -2.27 10.18 21.22 0.22 -2.06 16 25 C -0.22 -3.70 11.23 66.72 0.75 -2.95 16 26 S 0.07 1.35 23.33 -56.49 -1.32 0.04 16 27 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.08 0.40 8.07 -2.39 -0.02 0.38 16 29 H 0.09 0.23 6.44 -2.39 -0.02 0.21 16 30 H 0.11 1.18 8.07 -2.39 -0.02 1.16 16 31 H 0.06 1.41 7.43 -2.38 -0.02 1.40 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.34 11.80 8.43 -89.70 -0.76 11.04 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 40 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.14 0.80 8.11 -2.38 -0.02 0.78 16 42 H 0.12 1.08 7.40 -2.39 -0.02 1.06 16 43 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 45 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -80.56 396.59 0.24 -80.31 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -0.47 Total: 37.60 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 7.05 Total: 10.07 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -6.95 Total: -119.75 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.10 Total: -53.85 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.32 Total: 0.04 kcal Total: -80.56 0.24 -80.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733081527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.193 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds