Wall clock time and date at job start Tue Mar 31 2020 23:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42910 * 113.99782 * 2 1 4 4 C 1.50700 * 109.46807 * 179.97438 * 3 2 1 5 5 N 1.28649 * 124.71679 * 90.25621 * 4 3 2 6 6 C 1.33565 * 115.76286 * 180.22434 * 5 4 3 7 7 C 1.47268 * 123.14057 * 179.82990 * 6 5 4 8 8 O 1.21626 * 119.99880 * 179.70222 * 7 6 5 9 9 N 1.34782 * 120.00028 * 359.69959 * 7 6 5 10 10 C 1.47024 * 125.64598 * 0.04144 * 9 7 6 11 11 C 1.54325 * 107.26911 * 178.90612 * 10 9 7 12 12 C 1.55163 * 102.93978 * 337.80832 * 11 10 9 13 13 H 1.09001 * 111.03948 * 277.41260 * 12 11 10 14 14 C 1.53007 * 111.00094 * 153.57878 * 12 11 10 15 15 N 1.46498 * 109.46759 * 181.35181 * 14 12 11 16 16 C 1.46499 * 119.99985 * 90.00114 * 15 14 12 17 17 C 1.36939 * 119.99782 * 269.99442 * 15 14 12 18 18 H 1.07994 * 120.00032 * 334.66844 * 17 15 14 19 19 C 1.38818 * 119.99775 * 154.66743 * 17 15 14 20 20 N 1.31618 * 119.99903 * 4.06679 * 19 17 15 21 21 Si 1.86800 * 119.99547 * 184.06413 * 19 17 15 22 22 H 1.48496 * 109.47372 * 90.00305 * 21 19 17 23 23 H 1.48506 * 109.46573 * 209.99724 * 21 19 17 24 24 H 1.48498 * 109.47266 * 329.99623 * 21 19 17 25 25 C 1.47421 * 125.64765 * 180.02562 * 9 7 6 26 26 C 1.35204 * 113.71845 * 359.55367 * 6 5 4 27 27 S 1.70759 * 124.72068 * 270.02221 * 4 3 2 28 28 H 1.08996 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47401 * 300.00278 * 1 2 3 30 30 H 1.09007 * 109.46733 * 60.00257 * 1 2 3 31 31 H 1.08996 * 109.47023 * 59.99986 * 3 2 1 32 32 H 1.09001 * 109.46686 * 299.99615 * 3 2 1 33 33 H 1.08992 * 109.88588 * 298.32431 * 10 9 7 34 34 H 1.09002 * 109.87925 * 59.33752 * 10 9 7 35 35 H 1.09002 * 110.71760 * 219.44756 * 11 10 9 36 36 H 1.08993 * 110.71852 * 96.17208 * 11 10 9 37 37 H 1.08993 * 109.47243 * 61.34852 * 14 12 11 38 38 H 1.08998 * 109.46556 * 301.35136 * 14 12 11 39 39 H 1.09002 * 109.46914 * 264.47794 * 16 15 14 40 40 H 1.09000 * 109.47030 * 144.48032 * 16 15 14 41 41 H 1.08992 * 109.47214 * 24.48359 * 16 15 14 42 42 H 0.96996 * 119.99876 * 180.02562 * 20 19 17 43 43 H 1.09001 * 110.36626 * 85.32468 * 25 9 7 44 44 H 1.08994 * 110.45939 * 323.04988 * 25 9 7 45 45 H 1.07995 * 125.59142 * 180.23262 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2437 1.1332 -1.0565 6 6 5.5584 1.0234 -0.8481 7 6 6.5431 0.9457 -1.9405 8 8 7.7285 0.8520 -1.6851 9 7 6.1305 0.9785 -3.2232 10 6 4.7348 1.0897 -3.6718 11 6 4.7502 1.1165 -5.2147 12 6 6.1921 1.5887 -5.5396 13 1 6.2712 2.6742 -5.4796 14 6 6.6377 1.0844 -6.9137 15 7 8.0119 1.5214 -7.1721 16 6 9.1377 0.6753 -6.7683 17 6 8.2441 2.7206 -7.7911 18 1 7.4938 3.1476 -8.4398 19 6 9.4441 3.3874 -7.5846 20 7 10.3901 2.8302 -6.8587 21 14 9.7160 5.0753 -8.3371 22 1 9.2580 6.1206 -7.3869 23 1 11.1614 5.2636 -8.6211 24 1 8.9449 5.1836 -9.6016 25 6 7.0040 0.9090 -4.4087 26 6 5.9014 0.9962 0.4594 27 16 4.4815 1.1095 1.4046 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 4.1633 0.2302 -3.3217 34 1 4.2940 2.0094 -3.2871 35 1 4.0167 1.8272 -5.5954 36 1 4.5701 0.1207 -5.6195 37 1 5.9775 1.4889 -7.6808 38 1 6.5929 -0.0045 -6.9331 39 1 9.5033 0.9980 -5.7934 40 1 9.9383 0.7608 -7.5031 41 1 8.8092 -0.3622 -6.7080 42 1 11.2284 3.2963 -6.7141 43 1 7.2149 -0.1294 -4.6642 44 1 7.9326 1.4511 -4.2300 45 1 6.9075 0.9161 0.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753361771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:01 Heat of formation + Delta-G solvation = -19.549586 kcal Electronic energy + Delta-G solvation = -27301.275542 eV Core-core repulsion = 23446.270894 eV Total energy + Delta-G solvation = -3855.004648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79549 -40.25828 -38.97022 -38.55403 -37.11875 -33.97023 -32.74517 -32.23699 -30.06112 -29.18395 -28.36030 -27.67777 -26.83408 -25.69619 -24.09112 -22.82186 -21.90868 -21.17513 -20.66664 -19.46050 -18.69276 -17.68425 -17.54921 -17.33644 -17.03392 -16.73041 -16.64050 -16.30647 -15.97312 -15.44626 -15.19790 -14.93704 -14.84220 -14.51643 -14.32518 -13.93607 -13.82519 -13.60689 -13.24037 -13.14247 -13.10506 -12.97991 -12.82041 -12.60554 -12.39233 -12.32857 -12.13449 -11.98630 -11.78702 -11.61596 -11.46029 -11.33547 -10.87877 -10.79256 -10.64114 -10.60917 -10.11234 -9.68592 -8.74597 -7.82115 -5.30076 -0.65211 0.14716 0.47420 0.74169 1.44547 1.46261 1.54762 1.93084 2.12226 2.50491 2.60884 3.15221 3.32309 3.52063 3.69522 3.76866 3.86561 4.00358 4.10962 4.14315 4.19944 4.32889 4.44080 4.51044 4.58984 4.63487 4.66231 4.69158 4.74400 4.84829 4.91253 4.95610 4.96948 5.02277 5.05393 5.28148 5.30127 5.41703 5.49336 5.65737 5.80370 6.11714 6.27471 6.36545 6.43734 6.93286 7.18287 7.90007 8.34778 9.21877 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.002621 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.471843 B =10678.587497 C =11317.667252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.141 3.859 4 C -0.003 4.003 5 N -0.438 5.438 6 C -0.010 4.010 7 C 0.588 3.412 8 O -0.584 6.584 9 N -0.603 5.603 10 C 0.123 3.877 11 C -0.116 4.116 12 C -0.108 4.108 13 H 0.054 0.946 14 C 0.162 3.838 15 N -0.621 5.621 16 C 0.184 3.816 17 C -0.256 4.256 18 H 0.078 0.922 19 C -0.057 4.057 20 N -0.941 5.941 21 Si 0.967 3.033 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.263 1.263 25 C 0.130 3.870 26 C -0.236 4.236 27 S 0.332 5.668 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.061 0.939 39 H -0.006 1.006 40 H 0.022 0.978 41 H 0.020 0.980 42 H 0.244 0.756 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.980 -4.730 18.384 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C 0.061 3.939 4 C -0.281 4.281 5 N -0.156 5.156 6 C -0.145 4.145 7 C 0.376 3.624 8 O -0.466 6.466 9 N -0.334 5.334 10 C 0.002 3.998 11 C -0.154 4.154 12 C -0.130 4.130 13 H 0.073 0.927 14 C 0.036 3.964 15 N -0.345 5.345 16 C 0.039 3.961 17 C -0.386 4.386 18 H 0.095 0.905 19 C -0.251 4.251 20 N -0.589 5.589 21 Si 0.795 3.205 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.187 1.187 25 C 0.008 3.992 26 C -0.379 4.379 27 S 0.589 5.411 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.012 0.988 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -24.580 -4.871 19.114 31.516 hybrid contribution 1.849 1.114 -1.106 2.425 sum -22.732 -3.757 18.007 29.242 Atomic orbital electron populations 1.22992 0.78161 1.04141 1.01639 1.87915 1.22285 1.26974 1.95807 1.20973 0.82254 0.86104 1.04543 1.27266 1.02310 1.05911 0.92652 1.67024 1.02388 1.13782 1.32403 1.20001 0.90260 1.11217 0.93056 1.17313 0.86683 0.76689 0.81734 1.90791 1.18291 1.53564 1.83925 1.48544 1.10607 1.69766 1.04475 1.22143 0.80189 1.02709 0.94798 1.22769 0.95688 1.03670 0.93276 1.22939 0.94827 0.99252 0.95958 0.92711 1.20972 0.84986 0.97497 0.92944 1.44189 1.01440 1.20025 1.68807 1.20556 0.89338 0.89089 0.97157 1.19573 1.01726 0.96754 1.20594 0.90476 1.25955 0.97751 1.01452 0.99922 1.70295 1.06030 1.38153 1.44391 0.85265 0.76481 0.80472 0.78267 1.21696 1.22421 1.18746 1.22081 0.93195 0.99720 0.84250 1.26971 1.08434 1.05482 0.97040 1.82338 0.90810 1.60094 1.07812 0.88682 0.91817 0.92834 0.87484 0.89306 0.90206 0.90846 0.87833 0.88822 0.91676 0.92115 0.98781 0.95882 0.96190 0.94635 0.91934 0.94887 0.79053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -6.03 10.69 -148.98 -1.59 -7.62 16 3 C 0.14 1.66 6.51 71.24 0.46 2.12 16 4 C 0.00 -0.05 6.97 88.57 0.62 0.57 16 5 N -0.44 -11.23 7.65 -180.84 -1.38 -12.61 16 6 C -0.01 -0.30 6.62 40.56 0.27 -0.03 16 7 C 0.59 23.15 7.83 86.62 0.68 23.83 16 8 O -0.58 -27.49 16.97 -4.11 -0.07 -27.56 16 9 N -0.60 -22.44 3.33 -815.81 -2.71 -25.15 16 10 C 0.12 3.49 5.46 86.73 0.47 3.96 16 11 C -0.12 -2.98 6.42 31.79 0.20 -2.78 16 12 C -0.11 -3.97 3.29 -9.39 -0.03 -4.00 16 13 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 14 C 0.16 6.35 5.22 86.38 0.45 6.80 16 15 N -0.62 -31.77 2.85 -726.95 -2.07 -33.84 16 16 C 0.18 9.71 8.15 127.77 1.04 10.76 16 17 C -0.26 -14.25 9.67 84.03 0.81 -13.44 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.06 -3.28 5.38 84.86 0.46 -2.82 16 20 N -0.94 -58.61 10.12 21.65 0.22 -58.39 16 21 Si 0.97 46.60 29.56 68.60 2.03 48.63 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 25 C 0.13 5.40 5.37 86.86 0.47 5.86 16 26 C -0.24 -5.61 10.62 67.12 0.71 -4.90 16 27 S 0.33 4.74 22.92 -56.49 -1.29 3.44 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 2.11 7.65 -2.39 -0.02 2.09 16 34 H 0.07 2.03 7.50 -2.39 -0.02 2.01 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 2.07 8.04 -2.39 -0.02 2.05 16 37 H 0.06 2.36 8.04 -2.39 -0.02 2.34 16 38 H 0.06 2.12 7.81 -2.39 -0.02 2.10 16 39 H -0.01 -0.36 6.88 -2.39 -0.02 -0.38 16 40 H 0.02 1.31 7.03 -2.39 -0.02 1.29 16 41 H 0.02 0.91 7.83 -2.39 -0.02 0.89 16 42 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.06 2.55 8.00 -2.39 -0.02 2.53 16 44 H 0.03 1.71 7.54 -2.39 -0.02 1.69 16 45 H 0.19 4.37 8.03 -2.91 -0.02 4.34 16 Total: -1.00 -79.72 381.40 1.97 -77.75 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.99 Total: 7.98 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 7.86 Total: 27.37 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -5.95 Total: -130.00 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.66 Total: -35.18 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.29 Total: 3.44 kcal Total: -79.72 1.97 -77.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753361771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.205 kcal (2) G-P(sol) polarization free energy of solvation -79.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds