Wall clock time and date at job start Tue Mar 31 2020 22:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47066 * 2 1 4 4 C 1.34774 * 119.99819 * 95.72035 * 3 2 1 5 5 O 1.21282 * 119.99944 * 183.66967 * 4 3 2 6 6 C 1.50698 * 120.00190 * 3.66435 * 4 3 2 7 7 H 1.09006 * 109.46884 * 313.43192 * 6 4 3 8 8 C 1.52993 * 109.47149 * 73.43256 * 6 4 3 9 9 C 1.47195 * 109.47170 * 193.43959 * 6 4 3 10 10 N 5.37715 * 99.97076 * 57.51969 * 2 1 3 11 11 C 1.46502 * 120.00130 * 275.71668 * 3 2 1 12 12 H 1.09001 * 110.63903 * 1.69006 * 11 3 2 13 13 C 1.55155 * 110.71789 * 125.02199 * 11 3 2 14 14 C 1.54911 * 101.57992 * 153.86825 * 13 11 3 15 15 N 1.47430 * 104.83334 * 322.99108 * 14 13 11 16 16 C 1.34777 * 125.65427 * 204.16456 * 15 14 13 17 17 O 1.21274 * 120.00526 * 179.97438 * 16 15 14 18 18 C 1.50706 * 119.99536 * 359.95704 * 16 15 14 19 19 S 1.80996 * 109.46867 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99796 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00029 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99679 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00386 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99682 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46975 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46778 * 120.00335 * 24 22 20 27 27 H 1.48494 * 109.47126 * 239.99825 * 24 22 20 28 28 C 1.47023 * 108.70068 * 24.12750 * 15 14 13 29 29 H 1.09001 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47169 * 299.99718 * 1 2 3 31 31 H 1.09001 * 109.47691 * 59.99687 * 1 2 3 32 32 H 1.09005 * 109.46770 * 240.00636 * 2 1 3 33 33 H 1.08993 * 109.47419 * 120.00192 * 2 1 3 34 34 H 1.09000 * 109.47008 * 186.46540 * 8 6 4 35 35 H 1.09001 * 109.47489 * 306.46783 * 8 6 4 36 36 H 1.09006 * 109.46898 * 66.46891 * 8 6 4 37 37 H 1.09000 * 111.00991 * 271.93849 * 13 11 3 38 38 H 1.08994 * 111.00286 * 35.79878 * 13 11 3 39 39 H 1.08998 * 110.37332 * 204.15555 * 14 13 11 40 40 H 1.08997 * 110.37144 * 81.82711 * 14 13 11 41 41 H 1.08997 * 109.47120 * 300.00000 * 18 16 15 42 42 H 1.09003 * 109.46841 * 60.00096 * 18 16 15 43 43 H 0.96997 * 120.00188 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.88770 * 239.52338 * 28 15 14 45 45 H 1.09005 * 110.01087 * 118.43346 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3526 1.9778 1.1614 5 8 2.6933 3.1417 1.1692 6 6 2.3030 1.1986 2.4503 7 1 1.3650 0.6459 2.5049 8 6 3.4763 0.2179 2.4989 9 6 2.3921 2.1273 3.5888 10 7 2.4610 2.8440 4.4675 11 6 2.1433 2.1140 -1.2624 12 1 1.8057 1.5006 -2.0978 13 6 1.3548 3.4489 -1.2027 14 6 2.1265 4.3123 -2.2316 15 7 3.5404 3.9319 -2.0586 16 6 4.6040 4.6961 -2.3765 17 8 5.7276 4.2796 -2.1897 18 6 4.3972 6.0682 -2.9645 19 16 6.0046 6.8381 -3.2796 20 6 5.4789 8.3833 -3.9435 21 1 4.4251 8.5973 -4.0441 22 6 6.4191 9.3254 -4.3371 23 7 7.7034 9.0644 -4.2150 24 14 5.8617 10.9633 -5.0416 25 1 4.3778 11.0088 -5.0741 26 1 6.3720 12.0677 -4.1900 27 1 6.3924 11.1155 -6.4201 28 6 3.5978 2.5812 -1.4809 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.3771 -0.4242 3.3741 35 1 3.4757 -0.3944 1.5971 36 1 4.4120 0.7736 2.5602 37 1 0.3194 3.3053 -1.5116 38 1 1.4063 3.8888 -0.2068 39 1 1.9898 5.3720 -2.0163 40 1 1.7935 4.0840 -3.2441 41 1 3.8450 5.9829 -3.9004 42 1 3.8317 6.6823 -2.2636 43 1 8.3604 9.7227 -4.4904 44 1 4.1258 2.6077 -0.5276 45 1 4.1059 1.9034 -2.1669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759295260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:47 Heat of formation + Delta-G solvation = -57.724541 kcal Electronic energy + Delta-G solvation = -27223.333201 eV Core-core repulsion = 23366.673163 eV Total energy + Delta-G solvation = -3856.660039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96609 -40.63114 -38.53550 -37.55729 -36.88070 -34.61850 -34.36071 -32.64265 -31.03678 -30.83994 -28.95879 -27.69053 -26.32047 -24.73442 -24.13027 -22.95049 -20.88268 -20.53518 -19.63952 -18.66918 -18.29919 -18.09113 -17.35667 -16.91774 -16.71771 -16.46738 -16.35305 -15.78856 -15.55592 -15.14739 -14.96463 -14.72836 -14.55330 -14.45076 -14.17323 -13.93723 -13.82417 -13.72606 -13.64607 -13.34913 -13.23872 -13.17507 -12.93271 -12.84430 -12.81836 -12.65135 -12.61270 -12.41663 -12.27052 -12.08351 -11.75156 -11.58729 -11.18418 -11.02228 -10.61149 -10.32241 -9.75521 -9.69786 -8.71858 -8.37391 -6.16714 1.18408 1.33144 1.39502 1.39862 1.44751 1.53497 1.55902 1.68276 1.95041 2.23230 2.25769 2.76505 2.96571 3.20494 3.35066 3.49176 3.60555 3.87625 3.90058 4.02103 4.06347 4.18332 4.19694 4.29273 4.33827 4.39214 4.51660 4.63013 4.64838 4.68230 4.77792 4.79779 4.87139 4.95306 5.05654 5.11702 5.24877 5.28768 5.34204 5.38762 5.58957 5.65223 6.17244 6.25833 6.35279 6.47632 7.03282 7.04445 7.08877 8.72474 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018372 B = 0.002414 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.710472 B =11598.384473 C =12088.052707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 N -0.590 5.590 4 C 0.515 3.485 5 O -0.567 6.567 6 C -0.005 4.005 7 H 0.187 0.813 8 C -0.147 4.147 9 C 0.239 3.761 10 N -0.479 5.479 11 C 0.153 3.847 12 H 0.154 0.846 13 C -0.140 4.140 14 C 0.094 3.906 15 N -0.611 5.611 16 C 0.544 3.456 17 O -0.570 6.570 18 C -0.118 4.118 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.270 1.270 28 C 0.097 3.903 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.045 0.955 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.272 0.728 44 H 0.043 0.957 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.193 -28.092 7.131 37.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.036 4.036 3 N -0.321 5.321 4 C 0.301 3.699 5 O -0.445 6.445 6 C -0.029 4.029 7 H 0.204 0.796 8 C -0.205 4.205 9 C -0.079 4.079 10 N -0.155 5.155 11 C 0.049 3.951 12 H 0.171 0.829 13 C -0.179 4.179 14 C -0.028 4.028 15 N -0.346 5.346 16 C 0.332 3.668 17 O -0.449 6.449 18 C -0.269 4.269 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.824 3.176 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.195 1.195 28 C -0.026 4.026 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.064 0.936 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.048 -26.958 8.699 35.290 hybrid contribution -0.742 1.809 -0.659 2.063 sum -21.790 -25.149 8.041 34.233 Atomic orbital electron populations 1.22238 0.94544 1.03748 1.02591 1.22322 0.95489 0.79116 1.06689 1.47924 1.64209 1.15850 1.04158 1.20577 0.76708 0.86709 0.85878 1.90843 1.47683 1.18924 1.87094 1.19265 1.07795 0.92804 0.83049 0.79573 1.21999 0.93815 0.97512 1.07133 1.28980 0.91967 0.93129 0.93826 1.81233 1.10057 1.09836 1.14376 1.22139 0.91552 0.93991 0.87416 0.82884 1.23222 1.00227 0.94580 0.99867 1.22628 0.78469 1.00567 1.01160 1.48251 1.06721 1.17073 1.62529 1.19784 0.83612 0.85927 0.77508 1.90666 1.24912 1.73989 1.55362 1.23278 1.03586 0.95655 1.04346 1.85583 1.06844 1.17502 1.82591 1.23210 0.95992 1.01657 1.48405 0.89971 1.26183 0.94419 1.03240 0.95430 1.70194 1.01687 1.36917 1.46026 0.84858 0.79005 0.75933 0.77834 1.17988 1.20002 1.19525 1.22310 0.99395 0.82966 0.97976 0.89260 0.92691 0.92375 0.87548 0.86732 0.87429 0.86692 0.93564 0.86095 0.91088 0.91217 0.88002 0.87032 0.88481 0.91916 0.93825 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.43 10.23 71.98 0.74 1.16 16 2 C 0.08 -0.16 5.49 86.38 0.47 0.32 16 3 N -0.59 -4.93 2.54 -791.26 -2.01 -6.94 16 4 C 0.51 8.04 5.97 87.66 0.52 8.57 16 5 O -0.57 -16.34 12.47 -3.04 -0.04 -16.37 16 6 C -0.01 -0.04 2.24 -13.35 -0.03 -0.07 16 7 H 0.19 -0.34 7.22 -2.38 -0.02 -0.36 16 8 C -0.15 -0.61 8.72 71.98 0.63 0.02 16 9 C 0.24 4.82 13.92 89.44 1.24 6.06 16 10 N -0.48 -13.65 18.54 20.00 0.37 -13.28 16 11 C 0.15 1.86 3.45 46.18 0.16 2.02 16 12 H 0.15 0.62 7.95 -2.39 -0.02 0.61 16 13 C -0.14 -2.14 6.39 31.99 0.20 -1.93 16 14 C 0.09 1.95 6.69 86.85 0.58 2.53 16 15 N -0.61 -18.82 3.33 -811.77 -2.70 -21.52 16 16 C 0.54 23.26 7.87 87.66 0.69 23.95 16 17 O -0.57 -29.71 16.19 -3.01 -0.05 -29.76 16 18 C -0.12 -5.22 5.16 71.24 0.37 -4.85 16 19 S -0.15 -9.02 20.57 -56.49 -1.16 -10.18 16 20 C -0.54 -32.49 9.50 67.96 0.65 -31.85 16 21 H 0.08 4.57 7.80 -2.91 -0.02 4.54 16 22 C 0.01 0.70 5.49 84.86 0.47 1.16 16 23 N -0.91 -57.79 13.22 21.65 0.29 -57.50 16 24 Si 1.00 45.01 29.55 68.60 2.03 47.04 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 C 0.10 2.36 6.14 86.73 0.53 2.90 16 29 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.05 -0.06 8.03 -2.38 -0.02 -0.08 16 31 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.11 -0.49 8.08 -2.38 -0.02 -0.51 16 33 H 0.11 -0.74 4.47 -2.39 -0.01 -0.75 16 34 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.11 -0.17 6.14 -2.39 -0.01 -0.19 16 36 H 0.05 0.51 8.13 -2.38 -0.02 0.49 16 37 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.62 5.68 -2.39 -0.01 1.61 16 39 H 0.07 1.61 7.47 -2.39 -0.02 1.60 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.11 4.38 8.14 -2.40 -0.02 4.36 16 42 H 0.10 4.10 7.85 -2.39 -0.02 4.09 16 43 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.04 1.36 6.39 -2.39 -0.02 1.35 16 45 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -100.39 385.52 4.95 -95.43 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 1.01 Total: 3.10 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.22 Total: 9.99 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.05 Total: -99.25 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.09 Total: -46.14 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.16 Total: -10.18 kcal Total: -100.39 4.95 -95.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759295260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.710 kcal (2) G-P(sol) polarization free energy of solvation -100.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds