Wall clock time and date at job start Tue Mar 31 2020 22:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46793 * 2 1 4 4 C 1.36878 * 126.39869 * 265.01942 * 3 2 1 5 5 C 1.34671 * 106.81802 * 180.02562 * 4 3 2 6 6 N 1.34126 * 108.02015 * 359.97438 * 5 4 3 7 7 C 1.30499 * 109.25805 * 359.72751 * 6 5 4 8 8 C 1.50696 * 125.64921 * 180.29288 * 7 6 5 9 9 H 1.09007 * 109.46854 * 180.17962 * 8 7 6 10 10 C 1.47194 * 109.47555 * 60.17922 * 8 7 6 11 11 N 5.07272 * 73.71882 * 46.18986 * 2 1 3 12 12 C 1.50694 * 109.47181 * 300.17105 * 8 7 6 13 13 O 1.20765 * 120.00202 * 30.00516 * 12 8 7 14 14 C 1.50704 * 120.00482 * 210.00382 * 12 8 7 15 15 C 1.50695 * 109.47262 * 180.02562 * 14 12 8 16 16 C 1.38321 * 119.96408 * 269.72112 * 15 14 12 17 17 C 1.38282 * 120.13740 * 179.77049 * 16 15 14 18 18 C 1.38118 * 120.07056 * 0.50828 * 17 16 15 19 19 C 1.38855 * 119.92780 * 359.74400 * 18 17 16 20 20 O 1.35751 * 120.06870 * 179.97438 * 19 18 17 21 21 C 1.34832 * 117.00032 * 354.50111 * 20 19 18 22 22 H 1.07994 * 119.99702 * 5.04390 * 21 20 19 23 23 C 1.38654 * 119.99900 * 185.05372 * 21 20 19 24 24 N 1.31556 * 120.00418 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99827 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47123 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47186 * 120.00024 * 25 23 21 28 28 H 1.48501 * 109.46967 * 239.99908 * 25 23 21 29 29 C 1.38074 * 119.96902 * 89.99913 * 15 14 12 30 30 H 1.08998 * 109.47788 * 300.00290 * 1 2 3 31 31 H 1.09006 * 109.46968 * 60.00638 * 1 2 3 32 32 H 1.09007 * 109.46914 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46974 * 119.99369 * 2 1 3 34 34 H 1.09001 * 109.47542 * 240.00163 * 2 1 3 35 35 H 1.07997 * 126.59410 * 359.97025 * 4 3 2 36 36 H 1.08001 * 125.98805 * 180.02562 * 5 4 3 37 37 H 1.09007 * 109.46603 * 300.00227 * 14 12 8 38 38 H 1.09003 * 109.47065 * 59.99956 * 14 12 8 39 39 H 1.08003 * 119.93116 * 0.02562 * 16 15 14 40 40 H 1.08003 * 119.96627 * 180.25958 * 17 16 15 41 41 H 1.08002 * 120.03826 * 179.77134 * 18 17 16 42 42 H 0.96997 * 120.00610 * 180.02562 * 24 23 21 43 43 H 1.08006 * 120.03427 * 359.95756 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3791 2.1152 -1.0976 5 6 2.7656 3.3243 -0.6479 6 7 2.6435 3.3288 0.6878 7 6 2.1905 2.1703 1.0824 8 6 1.9101 1.7768 2.5098 9 1 1.5437 0.7505 2.5385 10 6 0.8927 2.6771 3.0763 11 7 0.1078 3.3709 3.5139 12 6 3.1781 1.8800 3.3176 13 8 4.0206 2.6916 3.0179 14 6 3.3948 0.9706 4.4996 15 6 4.7292 1.2753 5.1300 16 6 5.8625 0.6046 4.7068 17 6 7.0895 0.8849 5.2795 18 6 7.1854 1.8284 6.2836 19 6 6.0487 2.4996 6.7142 20 8 6.1395 3.4272 7.7013 21 6 7.3393 3.5685 8.2999 22 1 8.1932 3.0174 7.9347 23 6 7.4767 4.4213 9.3846 24 7 6.4365 5.0928 9.8293 25 14 9.1388 4.6166 10.2144 26 1 10.1382 3.7581 9.5291 27 1 9.5678 6.0360 10.1355 28 1 9.0317 4.2103 11.6387 29 6 4.8184 2.2197 6.1334 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.3588 1.7873 -2.1264 36 1 3.1122 4.1466 -1.2563 37 1 2.6026 1.1306 5.2312 38 1 3.3781 -0.0674 4.1673 39 1 5.7895 -0.1365 3.9246 40 1 7.9733 0.3625 4.9440 41 1 8.1434 2.0442 6.7330 42 1 6.5327 5.6897 10.5878 43 1 3.9325 2.7403 6.4660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772375544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:21 Heat of formation + Delta-G solvation = 63.004777 kcal Electronic energy + Delta-G solvation = -27841.418869 eV Core-core repulsion = 23854.550095 eV Total energy + Delta-G solvation = -3986.868774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56056 -39.92325 -38.77114 -36.84402 -36.43108 -35.44705 -33.00696 -32.35514 -31.95502 -30.53912 -29.27878 -28.50980 -26.86668 -25.22273 -24.26077 -22.02927 -21.73232 -21.46555 -20.69333 -20.15237 -18.05109 -17.74029 -17.47206 -16.92147 -16.40687 -15.60525 -15.53011 -15.19027 -14.92629 -14.83229 -14.35129 -14.21818 -14.16705 -13.97212 -13.76632 -13.54019 -13.48785 -13.14673 -12.94602 -12.83332 -12.65561 -12.52533 -12.37115 -12.28382 -11.91862 -11.85726 -11.54499 -11.27719 -10.86381 -10.77266 -10.61893 -10.40594 -10.13571 -9.92729 -9.81420 -9.31074 -8.81292 -8.72633 -8.06912 -7.20775 -6.40669 -3.99875 1.54126 1.70252 2.02732 2.18297 2.39477 2.51080 2.57883 2.93393 3.15318 3.16471 3.22332 3.53343 3.81236 3.93972 3.99876 4.07234 4.23757 4.37523 4.56200 4.62128 4.63793 4.83360 4.97624 5.05616 5.08711 5.14734 5.19403 5.30964 5.43568 5.47190 5.48229 5.63497 5.75835 5.91040 5.92086 6.18491 6.34621 6.48050 6.66668 6.73794 6.92204 7.09085 7.20416 7.24720 7.36825 7.40059 7.46468 7.83051 7.84350 8.04048 9.04855 9.75322 10.77516 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002376 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.370226 B =11779.659372 C =12076.350585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 N -0.449 5.449 4 C -0.044 4.044 5 C -0.025 4.025 6 N -0.445 5.445 7 C 0.197 3.803 8 C 0.055 3.945 9 H 0.145 0.855 10 C 0.219 3.781 11 N -0.389 5.389 12 C 0.357 3.643 13 O -0.374 6.374 14 C -0.116 4.116 15 C -0.044 4.044 16 C -0.199 4.199 17 C -0.074 4.074 18 C -0.229 4.229 19 C 0.155 3.845 20 O -0.178 6.178 21 C -0.391 4.391 22 H 0.092 0.908 23 C 0.038 3.962 24 N -0.863 5.863 25 Si 0.941 3.059 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.175 4.175 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.269 0.731 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 -15.819 -21.117 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.030 4.030 3 N -0.133 5.133 4 C -0.177 4.177 5 C -0.174 4.174 6 N -0.162 5.162 7 C -0.066 4.066 8 C 0.031 3.969 9 H 0.163 0.837 10 C -0.101 4.101 11 N -0.064 5.064 12 C 0.222 3.778 13 O -0.238 6.238 14 C -0.153 4.153 15 C -0.045 4.045 16 C -0.218 4.218 17 C -0.092 4.092 18 C -0.249 4.249 19 C 0.102 3.898 20 O -0.082 6.082 21 C -0.467 4.467 22 H 0.110 0.890 23 C -0.166 4.166 24 N -0.498 5.498 25 Si 0.766 3.234 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.202 1.202 29 C -0.195 4.195 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.196 0.804 36 H 0.190 0.810 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.065 -13.459 -19.824 26.393 hybrid contribution 0.952 -0.885 -0.512 1.397 sum -10.113 -14.344 -20.336 26.862 Atomic orbital electron populations 1.22209 0.93763 1.03562 1.03551 1.21987 0.95883 0.79852 1.05263 1.45429 1.48809 1.12589 1.06496 1.22755 1.08501 0.93939 0.92487 1.22421 1.06375 0.97612 0.90976 1.70332 1.14934 1.18875 1.12043 1.21737 1.07359 0.88837 0.88622 1.17489 0.93296 0.98151 0.88000 0.83718 1.27559 0.93777 0.94301 0.94491 1.81223 1.10368 1.07547 1.07294 1.24098 0.84977 0.84015 0.84663 1.90576 1.41581 1.28844 1.62803 1.21043 0.98134 1.00094 0.96072 1.18715 0.92879 0.96942 0.95923 1.20332 0.92632 1.04691 1.04097 1.20680 0.96569 0.96552 0.95402 1.21193 0.99165 1.02115 1.02397 1.19279 0.93007 0.88326 0.89222 1.83983 1.34637 1.47341 1.42197 1.21368 0.85384 1.27463 1.12499 0.89027 1.25290 0.99389 0.95811 0.96074 1.70050 1.29511 1.25632 1.24565 0.85649 0.80179 0.78562 0.79041 1.19108 1.20154 1.20169 1.19983 0.96089 1.02358 1.01044 0.91725 0.91603 0.90051 0.88561 0.88286 0.80440 0.80957 0.87343 0.87325 0.87862 0.87449 0.85572 0.92090 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.24 37.16 0.38 -0.14 16 2 C 0.09 0.31 6.40 -4.04 -0.03 0.29 16 3 N -0.45 -3.54 2.75 -113.91 -0.31 -3.85 16 4 C -0.04 -0.35 11.58 -16.56 -0.19 -0.54 16 5 C -0.02 -0.28 11.87 -17.81 -0.21 -0.49 16 6 N -0.44 -6.53 10.50 -10.82 -0.11 -6.64 16 7 C 0.20 2.24 6.13 -155.41 -0.95 1.29 16 8 C 0.05 0.54 2.84 -95.72 -0.27 0.27 16 9 H 0.15 0.61 6.84 -51.92 -0.35 0.25 16 10 C 0.22 2.77 14.60 -20.79 -0.30 2.47 16 11 N -0.39 -5.92 18.53 42.13 0.78 -5.14 16 12 C 0.36 4.63 6.16 -29.04 -0.18 4.45 16 13 O -0.37 -6.78 15.47 5.99 0.09 -6.68 16 14 C -0.12 -1.33 5.75 -29.04 -0.17 -1.50 16 15 C -0.04 -0.76 4.37 -104.65 -0.46 -1.22 16 16 C -0.20 -3.35 9.70 -39.53 -0.38 -3.73 16 17 C -0.07 -1.37 10.04 -39.61 -0.40 -1.77 16 18 C -0.23 -5.11 9.17 -39.40 -0.36 -5.47 16 19 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 20 O -0.18 -5.23 9.76 0.04 0.00 -5.23 16 21 C -0.39 -11.17 9.49 30.89 0.29 -10.88 16 22 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 23 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 24 N -0.86 -25.90 13.67 55.48 0.76 -25.15 16 25 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 29 C -0.18 -3.78 9.64 -39.40 -0.38 -4.16 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.09 8.14 -51.92 -0.42 -0.33 16 33 H 0.10 0.16 7.30 -51.93 -0.38 -0.22 16 34 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.11 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.10 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 41 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -39.42 383.99 -7.08 -46.50 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.08 Total: 1.00 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -3.97 Total: -16.54 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 1.11 Total: -40.77 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.42 -7.08 -46.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772375544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.503 kcal (2) G-P(sol) polarization free energy of solvation -39.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds