Wall clock time and date at job start Tue Mar 31 2020 22:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46793 * 2 1 4 4 C 1.36878 * 126.39869 * 265.01942 * 3 2 1 5 5 C 1.34671 * 106.81802 * 180.02562 * 4 3 2 6 6 N 1.34126 * 108.02015 * 359.97438 * 5 4 3 7 7 C 1.30499 * 109.25805 * 359.72751 * 6 5 4 8 8 C 1.50696 * 125.64921 * 180.29288 * 7 6 5 9 9 H 1.09007 * 109.46854 * 180.17962 * 8 7 6 10 10 C 1.47194 * 109.47555 * 60.17922 * 8 7 6 11 11 N 5.07272 * 73.71882 * 46.18986 * 2 1 3 12 12 C 1.50694 * 109.47181 * 300.17105 * 8 7 6 13 13 O 1.20765 * 120.00202 * 30.00516 * 12 8 7 14 14 C 1.50704 * 120.00482 * 210.00382 * 12 8 7 15 15 C 1.50695 * 109.47262 * 180.02562 * 14 12 8 16 16 C 1.38321 * 119.96408 * 269.72112 * 15 14 12 17 17 C 1.38282 * 120.13740 * 179.77049 * 16 15 14 18 18 C 1.38118 * 120.07056 * 0.50828 * 17 16 15 19 19 C 1.38855 * 119.92780 * 359.74400 * 18 17 16 20 20 O 1.35751 * 120.06870 * 179.97438 * 19 18 17 21 21 C 1.34832 * 117.00032 * 354.50111 * 20 19 18 22 22 H 1.07994 * 119.99702 * 5.04390 * 21 20 19 23 23 C 1.38654 * 119.99900 * 185.05372 * 21 20 19 24 24 N 1.31556 * 120.00418 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99827 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47123 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47186 * 120.00024 * 25 23 21 28 28 H 1.48501 * 109.46967 * 239.99908 * 25 23 21 29 29 C 1.38074 * 119.96902 * 89.99913 * 15 14 12 30 30 H 1.08998 * 109.47788 * 300.00290 * 1 2 3 31 31 H 1.09006 * 109.46968 * 60.00638 * 1 2 3 32 32 H 1.09007 * 109.46914 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46974 * 119.99369 * 2 1 3 34 34 H 1.09001 * 109.47542 * 240.00163 * 2 1 3 35 35 H 1.07997 * 126.59410 * 359.97025 * 4 3 2 36 36 H 1.08001 * 125.98805 * 180.02562 * 5 4 3 37 37 H 1.09007 * 109.46603 * 300.00227 * 14 12 8 38 38 H 1.09003 * 109.47065 * 59.99956 * 14 12 8 39 39 H 1.08003 * 119.93116 * 0.02562 * 16 15 14 40 40 H 1.08003 * 119.96627 * 180.25958 * 17 16 15 41 41 H 1.08002 * 120.03826 * 179.77134 * 18 17 16 42 42 H 0.96997 * 120.00610 * 180.02562 * 24 23 21 43 43 H 1.08006 * 120.03427 * 359.95756 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3791 2.1152 -1.0976 5 6 2.7656 3.3243 -0.6479 6 7 2.6435 3.3288 0.6878 7 6 2.1905 2.1703 1.0824 8 6 1.9101 1.7768 2.5098 9 1 1.5437 0.7505 2.5385 10 6 0.8927 2.6771 3.0763 11 7 0.1078 3.3709 3.5139 12 6 3.1781 1.8800 3.3176 13 8 4.0206 2.6916 3.0179 14 6 3.3948 0.9706 4.4996 15 6 4.7292 1.2753 5.1300 16 6 5.8625 0.6046 4.7068 17 6 7.0895 0.8849 5.2795 18 6 7.1854 1.8284 6.2836 19 6 6.0487 2.4996 6.7142 20 8 6.1395 3.4272 7.7013 21 6 7.3393 3.5685 8.2999 22 1 8.1932 3.0174 7.9347 23 6 7.4767 4.4213 9.3846 24 7 6.4365 5.0928 9.8293 25 14 9.1388 4.6166 10.2144 26 1 10.1382 3.7581 9.5291 27 1 9.5678 6.0360 10.1355 28 1 9.0317 4.2103 11.6387 29 6 4.8184 2.2197 6.1334 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.3588 1.7873 -2.1264 36 1 3.1122 4.1466 -1.2563 37 1 2.6026 1.1306 5.2312 38 1 3.3781 -0.0674 4.1673 39 1 5.7895 -0.1365 3.9246 40 1 7.9733 0.3625 4.9440 41 1 8.1434 2.0442 6.7330 42 1 6.5327 5.6897 10.5878 43 1 3.9325 2.7403 6.4660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772375544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:20 Heat of formation + Delta-G solvation = 36.412877 kcal Electronic energy + Delta-G solvation = -27842.571980 eV Core-core repulsion = 23854.550095 eV Total energy + Delta-G solvation = -3988.021885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.23990 -41.15758 -40.37318 -38.23143 -37.81635 -35.90145 -34.35922 -33.95870 -33.26456 -31.00601 -30.87824 -29.49622 -28.05269 -27.21769 -24.59882 -23.39075 -23.03594 -22.51586 -21.48679 -21.36092 -19.47964 -18.82534 -18.78597 -18.17399 -17.32340 -16.77461 -16.46064 -16.35449 -16.15410 -16.03969 -15.68534 -15.42660 -15.40560 -14.93711 -14.87987 -14.68911 -14.42937 -14.32371 -14.16859 -13.88703 -13.78721 -13.57839 -13.42813 -13.18867 -12.97617 -12.83004 -12.76116 -12.49811 -12.34991 -12.20177 -12.10908 -12.07925 -11.20592 -10.97822 -10.83442 -10.77150 -10.57497 -9.64996 -9.40277 -8.95945 -8.47777 -6.16497 0.51263 0.66586 0.77852 0.91158 1.32799 1.35241 1.42210 1.51980 1.54477 1.89206 2.12916 2.16850 2.65275 2.82663 2.99102 3.15945 3.24155 3.46217 3.67814 3.81003 3.89337 4.10939 4.13186 4.18284 4.33297 4.35720 4.48539 4.51393 4.53509 4.61698 4.69904 4.73470 4.76852 4.86706 4.94318 5.10277 5.13736 5.31897 5.32815 5.33023 5.67100 5.74294 5.77066 5.80346 6.02917 6.14168 6.27395 6.28388 6.43502 6.96916 7.14106 7.79786 8.76282 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002376 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.370226 B =11779.659372 C =12076.350585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 N -0.438 5.438 4 C -0.016 4.016 5 C -0.070 4.070 6 N -0.510 5.510 7 C 0.178 3.822 8 C 0.064 3.936 9 H 0.213 0.787 10 C 0.239 3.761 11 N -0.445 5.445 12 C 0.366 3.634 13 O -0.436 6.436 14 C -0.117 4.117 15 C -0.035 4.035 16 C -0.174 4.174 17 C -0.074 4.074 18 C -0.247 4.247 19 C 0.109 3.891 20 O -0.238 6.238 21 C -0.412 4.412 22 H 0.101 0.899 23 C -0.027 4.027 24 N -0.924 5.924 25 Si 1.021 2.979 26 H -0.250 1.250 27 H -0.270 1.270 28 H -0.266 1.266 29 C -0.198 4.198 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.219 0.781 36 H 0.174 0.826 37 H 0.127 0.873 38 H 0.177 0.823 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.272 0.728 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 -21.039 -24.176 33.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.039 4.039 3 N -0.121 5.121 4 C -0.151 4.151 5 C -0.218 4.218 6 N -0.229 5.229 7 C -0.085 4.085 8 C 0.040 3.960 9 H 0.229 0.771 10 C -0.080 4.080 11 N -0.121 5.121 12 C 0.235 3.765 13 O -0.304 6.304 14 C -0.153 4.153 15 C -0.035 4.035 16 C -0.192 4.192 17 C -0.092 4.092 18 C -0.267 4.267 19 C 0.059 3.941 20 O -0.145 6.145 21 C -0.488 4.488 22 H 0.119 0.881 23 C -0.224 4.224 24 N -0.563 5.563 25 Si 0.840 3.160 26 H -0.173 1.173 27 H -0.195 1.195 28 H -0.190 1.190 29 C -0.218 4.218 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.236 0.764 36 H 0.191 0.809 37 H 0.145 0.855 38 H 0.194 0.806 39 H 0.178 0.822 40 H 0.164 0.836 41 H 0.132 0.868 42 H 0.081 0.919 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.092 -18.761 -22.928 31.633 hybrid contribution 0.808 0.495 0.069 0.950 sum -10.285 -18.266 -22.859 31.015 Atomic orbital electron populations 1.22215 0.93611 1.04735 1.02368 1.22492 0.95939 0.77397 1.08027 1.45692 1.47315 1.13862 1.05185 1.23307 1.05239 0.92523 0.94040 1.22713 1.08899 0.99724 0.90445 1.70208 1.16951 1.21653 1.14072 1.21745 1.08101 0.88938 0.89738 1.17745 0.90851 1.00788 0.86592 0.77092 1.28114 0.93258 0.93487 0.93150 1.81241 1.12550 1.09201 1.09075 1.24554 0.85059 0.82491 0.84347 1.90594 1.44084 1.31260 1.64502 1.21319 0.95008 1.03384 0.95581 1.19334 0.96398 0.94188 0.93581 1.21060 0.91231 1.03760 1.03185 1.21180 0.99183 0.95132 0.93726 1.21310 0.97861 1.03468 1.04027 1.19928 0.95371 0.89254 0.89548 1.83941 1.35270 1.50503 1.44819 1.21866 0.85893 1.27949 1.13084 0.88147 1.26645 1.04052 0.95134 0.96530 1.70204 1.32500 1.27615 1.25991 0.84505 0.74695 0.78856 0.77965 1.17327 1.19524 1.19042 1.20289 0.94622 1.04022 1.02837 0.93016 0.92802 0.87642 0.85723 0.85759 0.76415 0.80850 0.85505 0.80586 0.82239 0.83610 0.86767 0.91908 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.24 10.24 71.98 0.74 0.50 16 2 C 0.08 0.07 6.40 86.38 0.55 0.62 16 3 N -0.44 -5.16 2.75 -514.29 -1.41 -6.57 16 4 C -0.02 -0.21 11.58 83.09 0.96 0.75 16 5 C -0.07 -1.54 11.87 83.52 0.99 -0.55 16 6 N -0.51 -15.00 10.50 -188.13 -1.97 -16.98 16 7 C 0.18 3.62 6.13 138.13 0.85 4.47 16 8 C 0.06 1.03 2.84 -14.10 -0.04 0.99 16 9 H 0.21 0.35 6.84 -2.38 -0.02 0.33 16 10 C 0.24 5.77 14.60 89.45 1.31 7.08 16 11 N -0.44 -13.66 18.53 20.00 0.37 -13.29 16 12 C 0.37 8.37 6.16 29.10 0.18 8.55 16 13 O -0.44 -15.49 15.47 -1.46 -0.02 -15.52 16 14 C -0.12 -2.09 5.75 29.10 0.17 -1.93 16 15 C -0.03 -1.10 4.37 -19.89 -0.09 -1.19 16 16 C -0.17 -5.03 9.70 22.30 0.22 -4.81 16 17 C -0.07 -2.55 10.04 22.25 0.22 -2.32 16 18 C -0.25 -11.25 9.17 22.39 0.21 -11.05 16 19 C 0.11 5.73 6.65 22.58 0.15 5.88 16 20 O -0.24 -15.20 9.76 -22.77 -0.22 -15.42 16 21 C -0.41 -25.18 9.49 67.92 0.64 -24.54 16 22 H 0.10 5.65 5.20 -2.91 -0.02 5.63 16 23 C -0.03 -1.60 5.49 84.83 0.47 -1.13 16 24 N -0.92 -59.41 13.67 21.61 0.30 -59.12 16 25 Si 1.02 44.77 29.55 68.60 2.03 46.79 16 26 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 29 C -0.20 -8.81 9.64 22.39 0.22 -8.60 16 30 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.05 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.10 -0.33 8.14 -2.38 -0.02 -0.34 16 33 H 0.12 -0.55 7.30 -2.39 -0.02 -0.57 16 34 H 0.12 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.22 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 37 H 0.13 1.98 8.08 -2.38 -0.02 1.96 16 38 H 0.18 0.89 8.08 -2.39 -0.02 0.87 16 39 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 41 H 0.11 5.32 5.64 -2.91 -0.02 5.30 16 42 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 43 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -101.91 383.99 7.85 -94.06 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.05 Total: 13.31 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 7.74 Total: -27.27 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -2.72 Total: -95.96 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.24 Total: -30.93 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -101.91 7.85 -94.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772375544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.472 kcal (2) G-P(sol) polarization free energy of solvation -101.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds