Wall clock time and date at job start Tue Mar 31 2020 22:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35233 * 126.07184 * 2 1 4 4 C 1.40410 * 107.86918 * 180.13918 * 3 2 1 5 5 N 1.40153 * 125.97598 * 179.82759 * 4 3 2 6 6 C 1.34780 * 119.99759 * 359.71250 * 5 4 3 7 7 O 1.21295 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99864 * 179.97438 * 6 5 4 9 9 C 1.50698 * 109.46990 * 180.02562 * 8 6 5 10 10 C 1.35108 * 125.68613 * 125.00185 * 9 8 6 11 11 N 1.36838 * 107.18141 * 180.02562 * 10 9 8 12 12 C 1.36482 * 132.57179 * 179.97438 * 11 10 9 13 13 C 1.34948 * 120.61123 * 179.97438 * 12 11 10 14 14 C 1.40477 * 120.29984 * 0.03985 * 13 12 11 15 15 C 1.36025 * 119.69114 * 359.97438 * 14 13 12 16 16 C 1.37081 * 106.99516 * 0.02562 * 11 10 9 17 17 N 1.32556 * 108.04019 * 359.97438 * 16 11 10 18 18 N 1.31217 * 108.04798 * 359.56057 * 4 3 2 19 19 N 1.34968 * 126.06545 * 179.65468 * 2 1 3 20 20 C 1.46496 * 125.97713 * 359.97438 * 19 2 1 21 21 C 1.50705 * 109.47304 * 270.01635 * 20 19 2 22 22 H 1.08006 * 119.99498 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00527 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99508 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00237 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47252 * 89.99669 * 25 23 21 27 27 H 1.48499 * 109.47458 * 210.00035 * 25 23 21 28 28 H 1.48501 * 109.47348 * 329.99982 * 25 23 21 29 29 H 1.09000 * 109.46879 * 270.34851 * 1 2 3 30 30 H 1.09003 * 109.46769 * 30.34265 * 1 2 3 31 31 H 1.08996 * 109.47221 * 150.34588 * 1 2 3 32 32 H 1.08001 * 126.06436 * 359.96593 * 3 2 1 33 33 H 0.96997 * 120.00003 * 179.71302 * 5 4 3 34 34 H 1.08999 * 109.46706 * 60.00311 * 8 6 5 35 35 H 1.09004 * 109.47466 * 300.00276 * 8 6 5 36 36 H 1.08005 * 126.41030 * 0.02562 * 10 9 8 37 37 H 1.08003 * 119.69297 * 0.03648 * 12 11 10 38 38 H 1.07998 * 119.85026 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.15010 * 180.25917 * 14 13 12 40 40 H 1.08000 * 120.33361 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.47607 * 30.01341 * 20 19 2 42 42 H 1.09000 * 109.47157 * 150.01862 * 20 19 2 43 43 H 0.96996 * 119.99532 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 -0.0032 5 7 4.7735 1.4747 -0.0077 6 6 4.6368 2.8155 -0.0151 7 8 3.5302 3.3123 -0.0174 8 6 5.8587 3.6976 -0.0193 9 6 5.4344 5.1436 -0.0268 10 6 5.8163 6.0816 0.8675 11 7 5.2115 7.2546 0.5059 12 6 5.2378 8.5101 1.0407 13 6 4.5339 9.5128 0.4749 14 6 3.7620 9.2762 -0.6747 15 6 3.7268 8.0295 -1.2177 16 6 4.4670 6.9928 -0.6149 17 7 4.6177 5.7111 -0.9176 18 7 3.6336 -0.6577 0.0045 19 7 2.3016 -1.0910 0.0066 20 6 1.8499 -2.4845 0.0155 21 6 1.6952 -2.9534 1.4394 22 1 1.9113 -2.2803 2.2560 23 6 1.2778 -4.2414 1.6997 24 7 1.0142 -5.0608 0.7052 25 14 1.0867 -4.8227 3.4645 26 1 -0.2960 -4.5455 3.9300 27 1 1.3498 -6.2824 3.5362 28 1 2.0543 -4.1022 4.3305 29 1 -0.3633 0.0063 1.0277 30 1 -0.3633 0.8869 -0.5192 31 1 -0.3633 -0.8930 -0.5084 32 1 1.9720 2.1210 -0.0005 33 1 5.6584 1.0774 -0.0055 34 1 6.4544 3.4887 -0.9079 35 1 6.4537 3.4984 0.8720 36 1 6.4756 5.9334 1.7100 37 1 5.8282 8.7030 1.9242 38 1 4.5639 10.5017 0.9081 39 1 3.2029 10.0814 -1.1279 40 1 3.1372 7.8361 -2.1017 41 1 0.8912 -2.5591 -0.4977 42 1 2.5845 -3.1079 -0.4944 43 1 0.7209 -5.9670 0.8883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271141663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:05 Heat of formation + Delta-G solvation = 137.673658 kcal Electronic energy + Delta-G solvation = -27381.174303 eV Core-core repulsion = 23429.836166 eV Total energy + Delta-G solvation = -3951.338137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.01759 -40.62261 -39.20886 -37.62118 -34.70649 -33.88234 -33.34567 -32.28459 -31.30380 -30.74510 -29.51517 -28.14409 -26.50705 -26.25154 -23.82742 -23.04445 -22.94100 -21.88288 -20.48490 -19.67957 -19.07582 -18.02608 -17.15169 -16.70356 -16.59469 -16.24208 -15.94503 -15.79957 -15.33864 -15.17226 -14.82991 -14.38380 -14.24994 -14.07133 -13.71481 -13.24666 -12.90498 -12.87966 -12.48651 -12.43453 -12.22292 -12.06381 -12.05816 -11.78776 -11.58948 -11.35669 -11.27566 -11.04573 -10.80078 -10.37369 -10.20317 -10.17493 -9.83735 -9.47373 -9.44547 -8.94245 -8.61602 -8.08856 -7.85490 -7.36964 -6.22602 -4.29937 0.46021 1.01044 2.31274 2.47050 2.52287 2.96654 3.00661 3.22884 3.29149 3.32611 3.35561 3.80619 3.90696 3.96283 4.10545 4.32918 4.39146 4.48263 4.73503 4.81021 4.89327 5.03034 5.10976 5.12823 5.25124 5.42995 5.52207 5.56151 5.72583 5.78248 5.85904 5.99586 6.16338 6.18750 6.31003 6.37878 6.51198 6.64816 6.81257 6.82780 6.99009 7.10192 7.54999 7.70048 7.73220 7.76943 7.92624 8.11698 8.42136 8.71903 8.79858 9.36030 10.84596 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.001972 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.790599 B =14193.198655 C =14364.922039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.267 3.733 5 N -0.635 5.635 6 C 0.520 3.480 7 O -0.495 6.495 8 C -0.055 4.055 9 C 0.079 3.921 10 C -0.092 4.092 11 N -0.363 5.363 12 C 0.054 3.946 13 C -0.145 4.145 14 C -0.109 4.109 15 C -0.072 4.072 16 C 0.220 3.780 17 N -0.458 5.458 18 N -0.323 5.323 19 N -0.318 5.318 20 C 0.259 3.741 21 C -0.534 4.534 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.158 0.842 33 H 0.409 0.591 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.183 0.817 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.853 28.221 -0.909 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.320 4.320 4 C 0.014 3.986 5 N -0.284 5.284 6 C 0.304 3.696 7 O -0.366 6.366 8 C -0.096 4.096 9 C -0.055 4.055 10 C -0.223 4.223 11 N -0.035 5.035 12 C -0.068 4.068 13 C -0.166 4.166 14 C -0.133 4.133 15 C -0.092 4.092 16 C -0.023 4.023 17 N -0.177 5.177 18 N -0.154 5.154 19 N -0.100 5.100 20 C 0.141 3.859 21 C -0.573 4.573 22 H 0.082 0.918 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.197 1.197 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.176 0.824 33 H 0.244 0.756 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.201 0.799 37 H 0.178 0.822 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.168 0.832 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.357 26.800 -1.569 28.430 hybrid contribution 0.361 0.359 1.764 1.836 sum 9.718 27.160 0.195 28.847 Atomic orbital electron populations 1.20324 0.87978 1.02783 1.03077 1.21055 0.94865 0.87221 1.01031 1.21247 0.89825 0.99741 1.21205 1.18979 0.87307 0.89521 1.02776 1.42481 1.07415 1.05058 1.73398 1.20294 0.91285 0.81187 0.76829 1.90694 1.26506 1.73519 1.45866 1.19929 0.96316 0.87607 1.05724 1.20007 0.97357 0.94774 0.93327 1.22316 1.09573 0.84145 1.06254 1.42802 1.31610 1.07828 1.21282 1.21587 1.02544 0.82364 1.00267 1.20793 0.98920 0.99120 0.97730 1.21015 0.99413 0.96869 0.96021 1.20325 0.98373 0.89835 1.00676 1.21009 0.99003 0.93368 0.88930 1.70679 1.17741 1.02358 1.26931 1.77241 0.99867 1.08562 1.29681 1.48954 1.01014 1.07708 1.52368 1.19670 0.95954 0.71422 0.98867 1.21325 1.46624 0.97915 0.91390 0.91800 1.24931 0.94751 0.96063 0.98121 1.69923 1.45011 1.06930 1.31137 0.86354 0.78640 0.77856 0.83824 1.20323 1.20893 1.19734 0.90513 0.90865 0.90894 0.82426 0.75584 0.86838 0.86929 0.79948 0.82154 0.83357 0.84106 0.83171 0.92845 0.93024 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.11 36.01 0.36 -1.14 16 2 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16 3 C -0.29 -6.27 9.52 -39.83 -0.38 -6.65 16 4 C 0.27 5.63 8.11 -154.39 -1.25 4.37 16 5 N -0.63 -10.07 5.45 -11.13 -0.06 -10.13 16 6 C 0.52 7.90 7.79 -10.98 -0.09 7.81 16 7 O -0.49 -9.58 12.69 5.54 0.07 -9.51 16 8 C -0.05 -0.55 6.26 -29.03 -0.18 -0.73 16 9 C 0.08 0.98 5.85 -82.97 -0.49 0.50 16 10 C -0.09 -0.91 11.63 -16.43 -0.19 -1.10 16 11 N -0.36 -3.73 2.95 -62.66 -0.18 -3.91 16 12 C 0.05 0.37 10.95 -16.65 -0.18 0.18 16 13 C -0.14 -0.79 9.99 -39.91 -0.40 -1.19 16 14 C -0.11 -0.70 10.07 -39.53 -0.40 -1.10 16 15 C -0.07 -0.68 10.11 -39.36 -0.40 -1.08 16 16 C 0.22 2.77 7.81 -156.04 -1.22 1.55 16 17 N -0.46 -6.89 10.67 -9.01 -0.10 -6.98 16 18 N -0.32 -7.66 12.59 31.44 0.40 -7.26 16 19 N -0.32 -7.78 3.59 -58.33 -0.21 -7.99 16 20 C 0.26 6.78 5.99 -5.19 -0.03 6.75 16 21 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 22 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 25 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.31 7.07 -51.93 -0.37 0.94 16 32 H 0.16 3.41 5.92 -52.49 -0.31 3.10 16 33 H 0.41 5.01 8.82 -40.82 -0.36 4.65 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.16 0.54 8.06 -52.48 -0.42 0.12 16 38 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 39 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.05 1.39 7.04 -51.93 -0.37 1.02 16 42 H 0.05 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -37.99 373.94 -9.73 -47.72 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.17 Total: 4.71 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -5.83 Total: -4.01 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.58 Total: -60.90 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.99 -9.73 -47.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271141663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.397 kcal (2) G-P(sol) polarization free energy of solvation -37.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds