Wall clock time and date at job start Tue Mar 31 2020 22:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47266 * 274.95868 * 3 2 1 5 5 H 1.48504 * 109.46927 * 34.95688 * 3 2 1 6 6 H 1.48497 * 109.47135 * 154.95417 * 3 2 1 7 7 C 1.37878 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00105 * 5.02751 * 7 2 1 9 9 C 1.50705 * 119.99563 * 185.02712 * 7 2 1 10 10 N 1.46500 * 109.46407 * 175.04230 * 9 7 2 11 11 C 1.46497 * 120.00316 * 274.86959 * 10 9 7 12 12 C 1.50704 * 109.47134 * 270.00542 * 11 10 9 13 13 C 1.38671 * 120.41740 * 269.71672 * 12 11 10 14 14 C 1.38632 * 118.42070 * 179.78057 * 13 12 11 15 15 C 1.38228 * 119.15716 * 0.52183 * 14 13 12 16 16 N 1.31853 * 120.76408 * 359.71968 * 15 14 13 17 17 C 1.31881 * 121.73012 * 359.97438 * 16 15 14 18 18 C 1.34786 * 119.99838 * 94.87563 * 10 9 7 19 19 O 1.21711 * 119.99939 * 185.23028 * 18 10 9 20 20 C 1.46666 * 119.99874 * 5.22804 * 18 10 9 21 21 C 1.36238 * 126.53594 * 75.24161 * 20 18 10 22 22 N 1.36421 * 110.04926 * 180.02562 * 21 20 18 23 23 N 1.39831 * 110.02584 * 359.97438 * 22 21 20 24 24 C 1.40739 * 133.19595 * 180.02562 * 23 22 21 25 25 C 1.32193 * 120.05247 * 179.76311 * 24 23 22 26 26 N 1.40751 * 120.44375 * 0.49542 * 25 24 23 27 27 C 1.40941 * 120.04068 * 359.46516 * 26 25 24 28 28 C 1.33204 * 119.59681 * 0.28057 * 27 26 25 29 29 H 0.96997 * 120.00268 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47178 * 55.04581 * 9 7 2 31 31 H 1.08997 * 109.46968 * 295.04025 * 9 7 2 32 32 H 1.09002 * 109.46864 * 30.00366 * 11 10 9 33 33 H 1.08994 * 109.47640 * 150.00625 * 11 10 9 34 34 H 1.07997 * 120.79097 * 0.02662 * 13 12 11 35 35 H 1.08003 * 120.42027 * 180.21974 * 14 13 12 36 36 H 1.07999 * 119.61755 * 179.74733 * 15 14 13 37 37 H 1.07993 * 119.62318 * 179.97438 * 17 16 15 38 38 H 1.07995 * 124.97222 * 0.02562 * 21 20 18 39 39 H 0.96999 * 124.98658 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.97184 * 359.97438 * 24 23 22 41 41 H 1.07996 * 119.77640 * 180.23589 * 25 24 23 42 42 H 0.96999 * 119.98190 * 179.74422 * 26 25 24 43 43 H 1.08002 * 120.20692 * 180.25869 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3918 2.1070 -1.3948 5 1 1.5028 2.6202 0.8022 6 1 3.5951 1.4123 0.5927 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1275 -0.0810 9 6 3.5072 -1.1964 0.1149 10 7 3.9873 -2.5771 0.2112 11 6 4.0302 -3.2487 1.5125 12 6 5.3690 -3.0044 2.1599 13 6 6.4234 -3.8787 1.9437 14 6 7.6381 -3.6117 2.5562 15 6 7.7538 -2.4968 3.3651 16 7 6.7280 -1.6899 3.5521 17 6 5.5597 -1.9093 2.9808 18 6 4.3897 -3.2295 -0.8975 19 8 4.6982 -4.4052 -0.8335 20 6 4.4559 -2.5227 -2.1809 21 6 5.4058 -1.6245 -2.5641 22 7 5.1414 -1.1731 -3.8241 23 7 3.9809 -1.7786 -4.3160 24 6 3.2804 -1.6729 -5.5320 25 6 2.1856 -2.3870 -5.7297 26 7 1.7056 -3.2491 -4.7259 27 6 2.3987 -3.3644 -3.5041 28 6 3.5047 -2.6493 -3.3052 29 1 -0.4850 0.8400 -0.0004 30 1 3.8046 -0.6453 1.0070 31 1 3.9394 -0.7220 -0.7662 32 1 3.2402 -2.8539 2.1513 33 1 3.8839 -4.3198 1.3736 34 1 6.3024 -4.7448 1.3100 35 1 8.4819 -4.2692 2.4071 36 1 8.6955 -2.2840 3.8491 37 1 4.7422 -1.2263 3.1579 38 1 6.2451 -1.3151 -1.9591 39 1 5.6795 -0.5270 -4.3077 40 1 3.6395 -1.0103 -6.3057 41 1 1.6537 -2.3052 -6.6660 42 1 0.8996 -3.7672 -4.8767 43 1 2.0350 -4.0282 -2.7337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149450607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:12 Heat of formation + Delta-G solvation = 152.532870 kcal Electronic energy + Delta-G solvation = -29500.384718 eV Core-core repulsion = 25549.690924 eV Total energy + Delta-G solvation = -3950.693793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.47274 -40.00127 -38.57515 -36.78025 -35.19080 -33.02865 -32.32867 -32.05474 -31.35686 -30.93400 -29.26035 -28.05287 -26.14269 -24.99685 -23.39773 -22.98472 -22.55354 -22.22440 -21.11810 -19.01793 -17.84088 -17.19411 -17.04258 -16.75130 -16.52864 -16.22745 -15.80122 -15.37459 -15.23605 -15.07424 -14.37853 -14.27283 -14.08631 -13.77103 -13.56485 -13.06496 -12.94970 -12.80315 -12.66800 -12.39929 -12.08458 -11.98531 -11.86850 -11.71616 -11.39987 -11.20236 -10.94944 -10.68301 -10.26287 -9.96856 -9.69372 -9.57174 -9.33399 -9.28439 -9.23338 -8.80677 -8.61901 -7.85799 -7.68815 -6.13179 -5.16091 -4.11250 1.24502 1.46857 1.83260 2.22068 2.75239 3.21528 3.26268 3.28332 3.30343 3.66604 3.87988 3.99354 4.17565 4.33495 4.54968 4.62158 4.99046 5.07813 5.12636 5.19513 5.20266 5.23443 5.27073 5.49219 5.64158 5.76673 5.83678 5.94345 5.94830 6.12662 6.22434 6.30512 6.32207 6.48428 6.58497 6.65086 6.73125 6.75475 6.88377 7.31752 7.39717 7.54084 7.61124 8.07200 8.12511 8.15080 8.33710 8.47907 8.61308 8.88989 8.97648 9.47674 10.99930 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.004878 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.487052 B = 5738.702317 C = 7252.062926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.866 3.134 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.078 0.922 9 C 0.212 3.788 10 N -0.579 5.579 11 C 0.159 3.841 12 C -0.144 4.144 13 C -0.057 4.057 14 C -0.180 4.180 15 C 0.089 3.911 16 N -0.490 5.490 17 C 0.112 3.888 18 C 0.603 3.397 19 O -0.562 6.562 20 C -0.229 4.229 21 C 0.153 3.847 22 N -0.505 5.505 23 N -0.420 5.420 24 C 0.022 3.978 25 C 0.056 3.944 26 N -0.705 5.705 27 C 0.001 3.999 28 C 0.144 3.856 29 H 0.264 0.736 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.180 0.820 39 H 0.429 0.571 40 H 0.142 0.858 41 H 0.155 0.845 42 H 0.403 0.597 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.676 -3.485 -4.976 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.125 4.125 3 Si 0.693 3.307 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.096 0.904 9 C 0.091 3.909 10 N -0.308 5.308 11 C 0.035 3.965 12 C -0.147 4.147 13 C -0.083 4.083 14 C -0.200 4.200 15 C -0.069 4.069 16 N -0.199 5.199 17 C -0.045 4.045 18 C 0.391 3.609 19 O -0.442 6.442 20 C -0.245 4.245 21 C 0.023 3.977 22 N -0.219 5.219 23 N -0.223 5.223 24 C -0.094 4.094 25 C -0.064 4.064 26 N -0.336 5.336 27 C -0.118 4.118 28 C 0.046 3.954 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.197 0.803 39 H 0.271 0.729 40 H 0.160 0.840 41 H 0.172 0.828 42 H 0.235 0.765 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.923 -2.961 -4.627 13.128 hybrid contribution 0.115 0.777 -0.942 1.226 sum 12.038 -2.184 -5.569 13.442 Atomic orbital electron populations 1.69891 1.06137 1.26818 1.50114 1.24795 0.94602 0.98558 0.94496 0.87016 0.80672 0.84580 0.78405 1.20460 1.21001 1.18748 1.21284 0.89249 0.94997 1.51007 0.90353 1.19825 0.96113 0.77677 0.97235 1.47930 1.61640 1.16190 1.05008 1.20168 0.92256 0.99319 0.84745 1.21482 0.98236 0.96312 0.98664 1.21692 0.91933 0.98750 0.95961 1.22115 0.98559 0.99576 0.99766 1.22690 0.97308 0.91075 0.95784 1.67700 1.00157 1.29767 1.22242 1.22815 0.94678 0.94871 0.92160 1.17115 0.75902 0.85331 0.82558 1.90697 1.51205 1.15909 1.86396 1.19154 1.00612 1.08989 0.95772 1.21859 0.98219 0.93092 0.84564 1.42901 1.19729 1.45035 1.14273 1.43683 1.19546 1.44730 1.14371 1.20241 0.95908 1.06318 0.86902 1.20964 0.95583 0.95698 0.94202 1.41739 1.30187 1.48366 1.13260 1.19891 0.94720 1.06664 0.90492 1.17991 0.95225 0.94769 0.87368 0.92637 0.95348 0.94886 0.88585 0.89333 0.84341 0.85226 0.83331 0.82564 0.80342 0.72872 0.84032 0.82795 0.76452 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 20.49 27.59 -169.99 -4.69 15.80 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -5.81 6.39 56.52 0.36 -5.45 16 7 C -0.53 -13.97 9.93 -34.44 -0.34 -14.31 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.21 4.69 4.14 -5.19 -0.02 4.67 16 10 N -0.58 -11.51 2.44 -177.98 -0.43 -11.95 16 11 C 0.16 2.76 5.62 -5.19 -0.03 2.73 16 12 C -0.14 -2.24 5.48 -104.48 -0.57 -2.81 16 13 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 14 C -0.18 -2.19 10.11 -39.44 -0.40 -2.59 16 15 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 16 N -0.49 -7.52 10.36 -13.25 -0.14 -7.66 16 17 C 0.11 1.75 10.86 -17.55 -0.19 1.56 16 18 C 0.60 12.33 7.52 -12.85 -0.10 12.23 16 19 O -0.56 -12.21 16.57 5.18 0.09 -12.13 16 20 C -0.23 -4.48 4.49 -103.31 -0.46 -4.94 16 21 C 0.15 2.42 10.85 -16.23 -0.18 2.25 16 22 N -0.51 -7.45 7.28 30.90 0.23 -7.22 16 23 N -0.42 -7.39 4.21 -8.60 -0.04 -7.43 16 24 C 0.02 0.33 11.29 -15.38 -0.17 0.15 16 25 C 0.06 0.78 11.26 -15.37 -0.17 0.60 16 26 N -0.70 -11.30 5.72 -11.56 -0.07 -11.37 16 27 C 0.00 0.03 11.36 -15.10 -0.17 -0.14 16 28 C 0.14 2.92 7.00 -81.15 -0.57 2.35 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.03 0.62 7.03 -51.93 -0.37 0.25 16 31 H 0.03 0.74 5.42 -51.93 -0.28 0.46 16 32 H 0.10 1.65 8.02 -51.93 -0.42 1.23 16 33 H 0.09 1.52 7.31 -51.93 -0.38 1.15 16 34 H 0.14 1.99 7.97 -52.49 -0.42 1.57 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.16 2.38 8.06 -52.49 -0.42 1.95 16 38 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.43 4.54 8.96 -182.80 -1.64 2.90 16 40 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.40 5.32 8.95 -40.82 -0.37 4.95 16 43 H 0.15 2.92 8.06 -52.49 -0.42 2.49 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -35.74 371.60 -9.16 -44.90 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -6.42 Total: 13.45 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -4.06 Total: 3.53 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: 0.32 Total: -71.16 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.69 Total: 15.80 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.74 -9.16 -44.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149450607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.436 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds