Wall clock time and date at job start Tue Mar 31 2020 22:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00242 * 2 1 4 4 C 1.50693 * 109.47450 * 179.97438 * 3 2 1 5 5 N 1.28646 * 124.72490 * 89.99877 * 4 3 2 6 6 C 1.33553 * 115.77254 * 180.02562 * 5 4 3 7 7 C 1.47265 * 123.14381 * 179.97438 * 6 5 4 8 8 O 1.21635 * 120.00124 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99998 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99965 * 179.72868 * 9 7 6 11 11 C 1.53002 * 109.47298 * 175.12551 * 10 9 7 12 12 N 1.46500 * 110.01434 * 303.90324 * 11 10 9 13 13 C 1.36935 * 120.00075 * 301.44720 * 12 11 10 14 14 H 1.07993 * 119.99904 * 354.22700 * 13 12 11 15 15 C 1.38815 * 119.99883 * 174.22889 * 13 12 11 16 16 N 1.31614 * 119.99894 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99893 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47097 * 90.00484 * 17 15 13 19 19 H 1.48507 * 109.47188 * 210.00176 * 17 15 13 20 20 H 1.48496 * 109.47352 * 329.99945 * 17 15 13 21 21 C 1.54268 * 110.03285 * 182.45950 * 11 10 9 22 22 C 1.54890 * 104.19421 * 217.10747 * 21 11 10 23 23 C 1.54894 * 102.74829 * 37.94168 * 22 21 11 24 24 C 1.53877 * 110.02783 * 65.29285 * 11 10 9 25 25 C 1.35213 * 113.71675 * 0.24082 * 6 5 4 26 26 S 1.70775 * 124.71963 * 270.00171 * 4 3 2 27 27 H 1.08994 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47122 * 300.00624 * 1 2 3 29 29 H 1.09000 * 109.46669 * 59.99811 * 1 2 3 30 30 H 1.09007 * 109.47383 * 59.99528 * 3 2 1 31 31 H 1.09006 * 109.46920 * 299.99843 * 3 2 1 32 32 H 0.96992 * 119.99892 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47038 * 295.12595 * 10 9 7 34 34 H 1.08999 * 109.47461 * 55.12406 * 10 9 7 35 35 H 0.97004 * 119.99512 * 121.45037 * 12 11 10 36 36 H 0.97000 * 120.00272 * 179.97438 * 16 15 13 37 37 H 1.09002 * 110.48795 * 335.78540 * 21 11 10 38 38 H 1.08999 * 110.48381 * 98.42558 * 21 11 10 39 39 H 1.09004 * 110.75318 * 279.62666 * 22 21 11 40 40 H 1.08998 * 110.75361 * 156.26116 * 22 21 11 41 41 H 1.08997 * 110.48319 * 203.38024 * 23 22 21 42 42 H 1.08999 * 110.48459 * 80.73964 * 23 22 21 43 43 H 1.08997 * 110.02856 * 238.56717 * 24 11 10 44 44 H 1.08997 * 110.03336 * 0.02562 * 24 11 10 45 45 H 1.07991 * 125.59071 * 179.76071 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2435 1.1284 -1.0564 6 6 5.5585 1.0238 -0.8480 7 6 6.5431 0.9450 -1.9403 8 8 7.7285 0.8502 -1.6850 9 7 6.1306 0.9779 -3.2230 10 6 7.1105 0.9055 -4.3096 11 6 6.3795 0.8396 -5.6521 12 7 5.4516 -0.2941 -5.6627 13 6 5.9206 -1.5646 -5.4602 14 1 6.9832 -1.7425 -5.3858 15 6 5.0302 -2.6239 -5.3506 16 7 5.4809 -3.8450 -5.1555 17 14 3.1922 -2.3160 -5.4787 18 1 2.7686 -2.4312 -6.8973 19 1 2.4640 -3.3199 -4.6617 20 1 2.8827 -0.9524 -4.9787 21 6 7.3981 0.7009 -6.8023 22 6 6.7967 1.5533 -7.9472 23 6 6.1923 2.7628 -7.1915 24 6 5.6128 2.1506 -5.8996 25 6 5.9010 0.9912 0.4596 26 16 4.4816 1.1099 1.4047 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8465 0.8900 31 1 1.6887 1.8463 -0.8901 32 1 5.1853 1.0538 -3.4266 33 1 7.7462 1.7906 -4.2851 34 1 7.7247 0.0135 -4.1862 35 1 4.5051 -0.1447 -5.8131 36 1 4.8587 -4.5851 -5.0786 37 1 8.3687 1.0958 -6.5020 38 1 7.4876 -0.3412 -7.1090 39 1 6.0197 0.9993 -8.4740 40 1 7.5756 1.8785 -8.6367 41 1 5.4017 3.2253 -7.7824 42 1 6.9681 3.4907 -6.9542 43 1 4.5505 1.9432 -6.0285 44 1 5.7619 2.8339 -5.0635 45 1 6.9067 0.9065 0.8440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753670700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:51 Heat of formation + Delta-G solvation = -50.891190 kcal Electronic energy + Delta-G solvation = -27844.790533 eV Core-core repulsion = 23988.426811 eV Total energy + Delta-G solvation = -3856.363722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63830 -40.38535 -39.42230 -38.66013 -35.65983 -35.20572 -32.94140 -32.66278 -30.01125 -29.60787 -29.21125 -27.22259 -26.66122 -25.30951 -24.34001 -22.54187 -21.55938 -20.93585 -20.29124 -19.67163 -19.52056 -17.87080 -17.63233 -17.12671 -17.03646 -16.69497 -16.46248 -16.24965 -16.24521 -15.94944 -15.30178 -15.07666 -14.83544 -14.79786 -14.43046 -14.15110 -13.73034 -13.69456 -13.48916 -13.18026 -13.07379 -13.02776 -12.51781 -12.38671 -12.33265 -11.99047 -11.95220 -11.88935 -11.63678 -11.46772 -11.38067 -11.28681 -10.99502 -10.91386 -10.79558 -10.69923 -10.21091 -9.86953 -9.29921 -7.99694 -5.32574 -0.63020 0.16710 0.48348 0.78093 1.33621 1.38736 1.44271 2.12287 2.35032 2.48483 2.66694 3.19006 3.30247 3.51128 3.71105 3.73748 3.86944 4.03909 4.05226 4.15430 4.17207 4.38357 4.40530 4.50222 4.52074 4.57955 4.62430 4.64653 4.74479 4.82304 4.87416 4.91841 4.99589 5.08271 5.16834 5.24814 5.35216 5.41118 5.52112 5.61126 5.83832 6.08062 6.24033 6.25944 6.59825 7.10628 7.12294 7.85585 8.04052 9.22226 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.004286 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.748902 B = 6531.998497 C = 7778.443583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.138 3.862 4 C -0.008 4.008 5 N -0.452 5.452 6 C -0.016 4.016 7 C 0.580 3.420 8 O -0.580 6.580 9 N -0.681 5.681 10 C 0.124 3.876 11 C 0.188 3.812 12 N -0.734 5.734 13 C -0.204 4.204 14 H 0.052 0.948 15 C -0.065 4.065 16 N -0.987 5.987 17 Si 0.948 3.052 18 H -0.278 1.278 19 H -0.308 1.308 20 H -0.250 1.250 21 C -0.131 4.131 22 C -0.113 4.113 23 C -0.110 4.110 24 C -0.123 4.123 25 C -0.234 4.234 26 S 0.334 5.666 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.410 0.590 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.365 0.635 36 H 0.253 0.747 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 19.433 11.287 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.059 3.941 4 C -0.286 4.286 5 N -0.170 5.170 6 C -0.152 4.152 7 C 0.365 3.635 8 O -0.462 6.462 9 N -0.329 5.329 10 C -0.001 4.001 11 C 0.098 3.902 12 N -0.377 5.377 13 C -0.335 4.335 14 H 0.070 0.930 15 C -0.256 4.256 16 N -0.638 5.638 17 Si 0.776 3.224 18 H -0.204 1.204 19 H -0.235 1.235 20 H -0.174 1.174 21 C -0.171 4.171 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.377 4.377 26 S 0.591 5.409 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.246 0.754 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.199 0.801 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -8.721 19.093 12.001 24.179 hybrid contribution -0.561 -1.020 -1.076 1.585 sum -9.283 18.073 10.925 23.069 Atomic orbital electron populations 1.22996 0.78174 1.03986 1.01822 1.87943 1.22424 1.27510 1.95811 1.21030 0.82593 0.85880 1.04602 1.27198 1.02283 1.06272 0.92869 1.66831 1.03052 1.13828 1.33316 1.20262 0.90120 1.10891 0.93901 1.17475 0.86769 0.76420 0.82863 1.90734 1.17671 1.53271 1.84492 1.45561 1.11792 1.70932 1.04593 1.21879 0.91103 0.99958 0.87203 1.20742 0.90530 0.87628 0.91325 1.42858 1.05659 1.02305 1.86884 1.18758 0.92470 0.84044 1.38231 0.92994 1.25409 1.01969 0.95096 1.03111 1.69890 1.34863 0.99719 1.59327 0.85508 0.81520 0.77923 0.77428 1.20395 1.23522 1.17433 1.22748 0.98177 1.00003 0.96176 1.22379 0.99927 0.96003 0.96698 1.22297 1.00629 0.97056 0.94734 1.22430 0.99583 0.94518 0.99550 1.27003 1.08424 1.05384 0.96871 1.82179 0.90998 1.60188 1.07510 0.89214 0.90966 0.93036 0.86712 0.89680 0.75430 0.90552 0.95059 0.80087 0.93831 0.91090 0.93667 0.92720 0.90146 0.90105 0.90057 0.91453 0.90472 0.78411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.81 10.69 -148.98 -1.59 -11.40 16 3 C 0.14 2.54 6.51 71.23 0.46 3.01 16 4 C -0.01 -0.19 6.97 88.57 0.62 0.43 16 5 N -0.45 -14.78 10.12 -180.84 -1.83 -16.61 16 6 C -0.02 -0.56 6.70 40.56 0.27 -0.29 16 7 C 0.58 23.88 7.80 86.62 0.68 24.56 16 8 O -0.58 -26.58 16.71 -4.14 -0.07 -26.64 16 9 N -0.68 -27.10 5.10 -466.51 -2.38 -29.47 16 10 C 0.12 4.91 3.99 86.38 0.34 5.26 16 11 C 0.19 6.87 0.68 4.33 0.00 6.87 16 12 N -0.73 -33.24 4.56 -300.07 -1.37 -34.61 16 13 C -0.20 -11.61 8.87 84.03 0.75 -10.87 16 14 H 0.05 3.33 7.46 -2.91 -0.02 3.31 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 16 N -0.99 -65.70 13.97 21.65 0.30 -65.39 16 17 Si 0.95 47.23 27.68 68.60 1.90 49.13 16 18 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 19 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 20 H -0.25 -11.25 6.61 99.48 0.66 -10.59 16 21 C -0.13 -4.53 5.94 31.67 0.19 -4.35 16 22 C -0.11 -3.03 6.91 31.89 0.22 -2.81 16 23 C -0.11 -2.46 6.83 31.67 0.22 -2.25 16 24 C -0.12 -3.42 5.80 31.32 0.18 -3.24 16 25 C -0.23 -6.33 10.62 67.12 0.71 -5.62 16 26 S 0.33 6.16 22.92 -56.49 -1.29 4.86 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.41 15.93 7.51 -92.71 -0.70 15.23 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.65 16 34 H 0.03 1.50 7.49 -2.39 -0.02 1.48 16 35 H 0.37 16.01 5.21 -92.71 -0.48 15.52 16 36 H 0.25 16.21 8.31 -92.71 -0.77 15.44 16 37 H 0.07 2.22 7.85 -2.39 -0.02 2.20 16 38 H 0.04 1.90 7.11 -2.39 -0.02 1.89 16 39 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.88 7.44 -2.39 -0.02 1.86 16 44 H 0.08 1.98 7.55 -2.39 -0.02 1.96 16 45 H 0.20 4.86 8.03 -2.92 -0.02 4.84 16 Total: -1.00 -81.64 382.06 -0.18 -81.83 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -0.21 Total: 39.45 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.36 Total: 8.86 kcal Atomic # 7 Polarization: -140.81 SS G_CDS: -5.27 Total: -146.08 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.66 Total: -38.05 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.90 Total: 49.13 kcal Atomic # 16 Polarization: 6.16 SS G_CDS: -1.29 Total: 4.86 kcal Total: -81.64 -0.18 -81.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.935 kcal (2) G-P(sol) polarization free energy of solvation -81.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds