Wall clock time and date at job start Tue Mar 31 2020 23:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46928 * 2 1 4 4 C 1.50698 * 109.47314 * 119.99848 * 2 1 3 5 5 H 1.08002 * 119.99813 * 119.99283 * 4 2 1 6 6 C 1.37873 * 120.00009 * 299.99999 * 4 2 1 7 7 N 1.31513 * 120.00324 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46957 * 59.99676 * 8 6 4 10 10 H 1.48498 * 109.47316 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46903 * 300.00002 * 8 6 4 12 12 N 1.46504 * 109.46861 * 239.99695 * 2 1 3 13 13 C 1.46500 * 120.00336 * 300.00063 * 12 2 1 14 14 C 1.37154 * 119.99566 * 119.99569 * 12 2 1 15 15 N 1.31375 * 118.95989 * 359.97438 * 14 12 2 16 16 C 1.33971 * 121.18718 * 180.02562 * 15 14 12 17 17 C 1.40451 * 119.46178 * 0.03862 * 16 15 14 18 18 C 1.40996 * 107.14889 * 180.02562 * 17 16 15 19 19 N 1.30407 * 108.42919 * 359.71493 * 18 17 16 20 20 N 1.36250 * 133.93041 * 180.02562 * 16 15 14 21 21 C 1.40057 * 125.87608 * 359.97438 * 20 16 15 22 22 C 1.38870 * 120.07262 * 144.99797 * 21 20 16 23 23 C 1.38103 * 119.93384 * 179.97438 * 22 21 20 24 24 C 1.38285 * 120.07042 * 0.02562 * 23 22 21 25 25 C 1.38287 * 120.13989 * 0.02562 * 24 23 22 26 26 C 1.38117 * 120.06854 * 359.97438 * 25 24 23 27 27 C 1.41761 * 118.67445 * 359.96880 * 17 16 15 28 28 O 1.21847 * 120.87188 * 179.97438 * 27 17 16 29 29 N 1.35174 * 118.26269 * 359.97438 * 27 17 16 30 30 H 0.97004 * 119.83774 * 179.97438 * 29 27 17 31 31 H 1.09006 * 109.46904 * 300.00001 * 1 2 3 32 32 H 1.09002 * 109.47556 * 59.99995 * 1 2 3 33 33 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 34 34 H 0.96995 * 120.00555 * 179.97438 * 7 6 4 35 35 H 1.08991 * 109.46893 * 270.00344 * 13 12 2 36 36 H 1.09000 * 109.47041 * 29.99879 * 13 12 2 37 37 H 1.08994 * 109.47373 * 149.99832 * 13 12 2 38 38 H 1.08000 * 125.79098 * 179.97438 * 18 17 16 39 39 H 1.08001 * 120.03178 * 359.96024 * 22 21 20 40 40 H 1.08000 * 119.96725 * 180.02562 * 23 22 21 41 41 H 1.08003 * 119.93218 * 179.72398 * 24 23 22 42 42 H 1.07997 * 119.96913 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.02916 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.8065 -1.1209 4.0081 10 1 1.8271 -0.4198 5.2204 11 1 1.8259 -2.5201 4.0077 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 6 2.8067 -0.0241 -2.0991 15 7 3.1110 1.2334 -1.8712 16 6 3.8774 1.9272 -2.7234 17 6 4.3641 1.3001 -3.8821 18 6 5.1301 2.2554 -4.5812 19 7 5.1077 3.3732 -3.9099 20 7 4.3444 3.2069 -2.7477 21 6 4.0986 4.1888 -1.7797 22 6 5.0808 5.1198 -1.4678 23 6 4.8352 6.0871 -0.5133 24 6 3.6130 6.1290 0.1322 25 6 2.6332 5.2028 -0.1752 26 6 2.8726 4.2329 -1.1289 27 6 4.0268 -0.0571 -4.1138 28 8 4.4269 -0.6402 -5.1061 29 7 3.2497 -0.6877 -3.2051 30 1 3.0047 -1.6164 -3.3411 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 0.7090 1.1615 3.4844 35 1 2.4156 -2.7377 -0.9717 36 1 0.6904 -2.3003 -0.9846 37 1 1.6237 -2.2853 -2.5001 38 1 5.6444 2.0907 -5.5165 39 1 6.0358 5.0871 -1.9712 40 1 5.5985 6.8116 -0.2706 41 1 3.4249 6.8837 0.8816 42 1 1.6795 5.2384 0.3303 43 1 2.1069 3.5101 -1.3689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080760321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:37 Heat of formation + Delta-G solvation = 121.215347 kcal Electronic energy + Delta-G solvation = -29509.331679 eV Core-core repulsion = 25557.279856 eV Total energy + Delta-G solvation = -3952.051823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.94906 -40.04204 -38.62691 -38.01420 -35.84409 -33.65796 -33.27150 -32.75854 -30.82197 -29.79463 -29.14628 -28.88839 -26.48916 -25.42417 -23.98363 -23.31154 -22.87641 -21.99459 -20.33913 -20.14270 -18.84393 -18.39764 -17.41119 -16.72973 -16.48135 -16.04992 -15.77737 -15.38743 -14.98264 -14.84938 -14.51733 -14.11263 -14.02440 -13.81529 -13.73925 -13.57600 -13.21037 -12.87821 -12.57090 -12.40410 -11.94990 -11.79088 -11.53240 -11.25363 -11.13411 -11.02692 -10.94904 -10.83763 -10.52401 -10.39685 -10.34278 -10.06067 -9.81362 -9.65993 -9.28024 -8.80908 -8.69514 -8.58489 -8.08879 -7.29422 -6.26175 -4.35224 0.93917 1.53407 1.70863 2.00479 2.14986 2.72875 2.86657 3.16981 3.23163 3.25216 3.45652 3.87631 4.03521 4.22875 4.55936 4.65426 4.92215 5.04322 5.07241 5.09709 5.17259 5.27593 5.43500 5.53657 5.59452 5.61822 5.69675 5.83352 5.90056 6.11793 6.17233 6.43870 6.47972 6.48331 6.54431 6.65410 6.66065 6.73320 6.77721 6.86637 7.01450 7.19545 7.41818 7.54118 7.69803 7.74646 7.87927 7.99906 8.16144 8.40017 8.67713 9.31461 10.78628 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.005257 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.748002 B = 5324.860266 C = 7876.347675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.266 3.734 3 H 0.084 0.916 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.071 3.929 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.549 5.549 13 C 0.080 3.920 14 C 0.668 3.332 15 N -0.587 5.587 16 C 0.414 3.586 17 C -0.407 4.407 18 C 0.149 3.851 19 N -0.292 5.292 20 N -0.326 5.326 21 C 0.160 3.840 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.095 4.095 26 C -0.104 4.104 27 C 0.601 3.399 28 O -0.545 6.545 29 N -0.671 5.671 30 H 0.412 0.588 31 H 0.100 0.900 32 H 0.015 0.985 33 H 0.032 0.968 34 H 0.266 0.734 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.194 0.806 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 3.752 -6.418 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.168 3.832 3 H 0.102 0.898 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.132 4.132 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.259 5.259 13 C -0.064 4.064 14 C 0.311 3.689 15 N -0.329 5.329 16 C 0.173 3.827 17 C -0.425 4.425 18 C -0.044 4.044 19 N -0.107 5.107 20 N -0.105 5.105 21 C 0.068 3.932 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.113 4.113 26 C -0.124 4.124 27 C 0.397 3.603 28 O -0.423 6.423 29 N -0.322 5.322 30 H 0.253 0.747 31 H 0.118 0.882 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.211 0.789 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.867 5.283 -6.021 8.225 hybrid contribution 0.213 -2.218 0.277 2.245 sum 2.080 3.066 -5.744 6.835 Atomic orbital electron populations 1.22170 0.97605 0.99724 1.01399 1.19347 0.90996 0.95026 0.77868 0.89831 1.21183 1.32668 1.13421 0.89975 0.92244 1.24810 0.94682 0.94877 0.98851 1.69828 1.35731 1.22215 1.24216 0.86541 0.79328 0.79592 0.81888 1.20215 1.21029 1.20180 1.47376 1.45949 1.11090 1.21531 1.21803 1.03459 0.81348 0.99764 1.18753 0.84409 0.85454 0.80299 1.67313 1.29287 1.04059 1.32214 1.18806 0.88942 0.85623 0.89366 1.19709 1.21475 0.97129 1.04151 1.23459 0.94411 0.88164 0.98329 1.77225 1.16382 1.22350 0.94785 1.45315 1.41401 1.05795 1.18006 1.17454 0.94693 0.90422 0.90597 1.20897 0.98407 0.95655 0.98658 1.20947 0.97389 0.98252 0.96260 1.21207 0.93740 0.99439 1.00069 1.21042 0.99902 0.93941 0.96440 1.21153 0.95196 0.99030 0.97055 1.15883 0.76973 0.85873 0.81535 1.90862 1.54934 1.68796 1.27683 1.44592 1.48853 1.17037 1.21749 0.74735 0.88160 0.96636 0.94929 0.92378 0.91652 0.88758 0.92776 0.78938 0.85321 0.85574 0.85772 0.84964 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.95 37.16 0.33 -2.72 16 2 C 0.27 5.73 2.64 -69.08 -0.18 5.54 16 3 H 0.08 2.04 6.73 -51.93 -0.35 1.69 16 4 C -0.53 -12.70 8.37 -34.44 -0.29 -12.99 16 5 H 0.06 1.41 7.65 -52.49 -0.40 1.01 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -22.32 11.32 55.43 0.63 -21.69 16 8 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 N -0.55 -9.73 2.82 -177.18 -0.50 -10.22 16 13 C 0.08 1.06 9.45 59.85 0.57 1.63 16 14 C 0.67 11.97 8.22 -320.82 -2.64 9.33 16 15 N -0.59 -11.62 7.85 -12.92 -0.10 -11.72 16 16 C 0.41 7.96 7.51 -155.77 -1.17 6.79 16 17 C -0.41 -7.38 6.16 -106.67 -0.66 -8.04 16 18 C 0.15 2.38 12.05 -17.11 -0.21 2.18 16 19 N -0.29 -5.01 12.22 30.79 0.38 -4.63 16 20 N -0.33 -5.99 3.75 -9.93 -0.04 -6.03 16 21 C 0.16 2.76 6.40 -83.63 -0.54 2.22 16 22 C -0.12 -1.73 9.76 -39.40 -0.38 -2.12 16 23 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 24 C -0.13 -1.59 10.04 -39.55 -0.40 -1.99 16 25 C -0.09 -1.37 10.04 -39.61 -0.40 -1.77 16 26 C -0.10 -1.75 9.37 -39.39 -0.37 -2.12 16 27 C 0.60 10.69 7.80 -14.73 -0.11 10.57 16 28 O -0.54 -10.47 17.97 5.06 0.09 -10.38 16 29 N -0.67 -10.57 5.16 -15.30 -0.08 -10.65 16 30 H 0.41 5.27 6.49 -40.82 -0.27 5.00 16 31 H 0.10 2.29 6.07 -51.93 -0.32 1.98 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.03 0.61 6.66 -51.93 -0.35 0.26 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.25 6.43 -51.93 -0.33 0.92 16 37 H 0.05 0.54 6.34 -51.93 -0.33 0.22 16 38 H 0.19 2.39 8.06 -52.49 -0.42 1.96 16 39 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.14 2.51 7.18 -52.49 -0.38 2.13 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -29.16 362.47 -10.92 -40.09 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.81 Total: 8.89 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -6.93 Total: 6.41 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: 0.29 Total: -64.95 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.16 -10.92 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.301 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds