Wall clock time and date at job start Tue Mar 31 2020 23:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46928 * 2 1 4 4 C 1.50698 * 109.47314 * 119.99848 * 2 1 3 5 5 H 1.08002 * 119.99813 * 119.99283 * 4 2 1 6 6 C 1.37873 * 120.00009 * 299.99999 * 4 2 1 7 7 N 1.31513 * 120.00324 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46957 * 59.99676 * 8 6 4 10 10 H 1.48498 * 109.47316 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46903 * 300.00002 * 8 6 4 12 12 N 1.46504 * 109.46861 * 239.99695 * 2 1 3 13 13 C 1.46500 * 120.00336 * 300.00063 * 12 2 1 14 14 C 1.37154 * 119.99566 * 119.99569 * 12 2 1 15 15 N 1.31375 * 118.95989 * 359.97438 * 14 12 2 16 16 C 1.33971 * 121.18718 * 180.02562 * 15 14 12 17 17 C 1.40451 * 119.46178 * 0.03862 * 16 15 14 18 18 C 1.40996 * 107.14889 * 180.02562 * 17 16 15 19 19 N 1.30407 * 108.42919 * 359.71493 * 18 17 16 20 20 N 1.36250 * 133.93041 * 180.02562 * 16 15 14 21 21 C 1.40057 * 125.87608 * 359.97438 * 20 16 15 22 22 C 1.38870 * 120.07262 * 144.99797 * 21 20 16 23 23 C 1.38103 * 119.93384 * 179.97438 * 22 21 20 24 24 C 1.38285 * 120.07042 * 0.02562 * 23 22 21 25 25 C 1.38287 * 120.13989 * 0.02562 * 24 23 22 26 26 C 1.38117 * 120.06854 * 359.97438 * 25 24 23 27 27 C 1.41761 * 118.67445 * 359.96880 * 17 16 15 28 28 O 1.21847 * 120.87188 * 179.97438 * 27 17 16 29 29 N 1.35174 * 118.26269 * 359.97438 * 27 17 16 30 30 H 0.97004 * 119.83774 * 179.97438 * 29 27 17 31 31 H 1.09006 * 109.46904 * 300.00001 * 1 2 3 32 32 H 1.09002 * 109.47556 * 59.99995 * 1 2 3 33 33 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 34 34 H 0.96995 * 120.00555 * 179.97438 * 7 6 4 35 35 H 1.08991 * 109.46893 * 270.00344 * 13 12 2 36 36 H 1.09000 * 109.47041 * 29.99879 * 13 12 2 37 37 H 1.08994 * 109.47373 * 149.99832 * 13 12 2 38 38 H 1.08000 * 125.79098 * 179.97438 * 18 17 16 39 39 H 1.08001 * 120.03178 * 359.96024 * 22 21 20 40 40 H 1.08000 * 119.96725 * 180.02562 * 23 22 21 41 41 H 1.08003 * 119.93218 * 179.72398 * 24 23 22 42 42 H 1.07997 * 119.96913 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.02916 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.8065 -1.1209 4.0081 10 1 1.8271 -0.4198 5.2204 11 1 1.8259 -2.5201 4.0077 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 6 2.8067 -0.0241 -2.0991 15 7 3.1110 1.2334 -1.8712 16 6 3.8774 1.9272 -2.7234 17 6 4.3641 1.3001 -3.8821 18 6 5.1301 2.2554 -4.5812 19 7 5.1077 3.3732 -3.9099 20 7 4.3444 3.2069 -2.7477 21 6 4.0986 4.1888 -1.7797 22 6 5.0808 5.1198 -1.4678 23 6 4.8352 6.0871 -0.5133 24 6 3.6130 6.1290 0.1322 25 6 2.6332 5.2028 -0.1752 26 6 2.8726 4.2329 -1.1289 27 6 4.0268 -0.0571 -4.1138 28 8 4.4269 -0.6402 -5.1061 29 7 3.2497 -0.6877 -3.2051 30 1 3.0047 -1.6164 -3.3411 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 0.7090 1.1615 3.4844 35 1 2.4156 -2.7377 -0.9717 36 1 0.6904 -2.3003 -0.9846 37 1 1.6237 -2.2853 -2.5001 38 1 5.6444 2.0907 -5.5165 39 1 6.0358 5.0871 -1.9712 40 1 5.5985 6.8116 -0.2706 41 1 3.4249 6.8837 0.8816 42 1 1.6795 5.2384 0.3303 43 1 2.1069 3.5101 -1.3689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080760321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:36 Heat of formation + Delta-G solvation = 108.290112 kcal Electronic energy + Delta-G solvation = -29509.892159 eV Core-core repulsion = 25557.279856 eV Total energy + Delta-G solvation = -3952.612303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.31046 -41.36988 -39.82917 -39.42496 -37.33565 -35.14902 -34.59659 -34.30135 -31.96392 -31.41003 -30.49205 -30.12327 -27.76654 -27.24285 -25.31786 -24.70948 -24.12530 -23.21780 -21.78926 -21.52743 -20.17104 -19.73747 -18.83561 -18.33684 -17.83709 -17.46025 -17.02353 -16.89898 -16.35794 -16.22109 -15.94848 -15.45578 -15.40991 -15.15556 -15.00129 -14.78529 -14.48891 -14.35314 -13.82728 -13.66046 -13.46935 -13.18702 -12.94664 -12.73582 -12.65197 -12.57635 -12.37089 -12.19285 -12.13131 -12.03940 -11.76646 -11.49530 -11.27136 -11.06895 -10.79002 -10.42760 -10.16586 -9.95323 -9.32982 -8.71614 -8.11217 -6.25978 -0.37153 0.39445 0.45967 0.63632 0.83073 1.35294 1.44140 1.47583 1.52346 1.53664 2.15812 2.43711 2.60193 2.76767 3.18032 3.21459 3.36696 3.58002 3.92343 3.97192 4.07953 4.19821 4.24819 4.36828 4.46163 4.49231 4.54012 4.65304 4.72841 4.92550 4.94091 4.97301 5.05318 5.07286 5.22527 5.26807 5.38866 5.47311 5.53743 5.55253 5.57819 5.66706 5.85046 6.00855 6.11262 6.19945 6.31612 6.40800 6.78155 6.79279 7.05714 7.43219 8.91367 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.005257 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.748002 B = 5324.860266 C = 7876.347675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.275 3.725 3 H 0.048 0.952 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.951 3.049 9 H -0.284 1.284 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.553 5.553 13 C 0.072 3.928 14 C 0.665 3.335 15 N -0.613 5.613 16 C 0.394 3.606 17 C -0.420 4.420 18 C 0.154 3.846 19 N -0.298 5.298 20 N -0.331 5.331 21 C 0.128 3.872 22 C -0.123 4.123 23 C -0.100 4.100 24 C -0.117 4.117 25 C -0.104 4.104 26 C -0.126 4.126 27 C 0.603 3.397 28 O -0.559 6.559 29 N -0.654 5.654 30 H 0.427 0.573 31 H 0.073 0.927 32 H 0.023 0.977 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.229 0.771 39 H 0.134 0.866 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.141 0.859 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 3.765 -6.420 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.175 3.825 3 H 0.066 0.934 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.172 4.172 7 N -0.544 5.544 8 Si 0.778 3.222 9 H -0.210 1.210 10 H -0.211 1.211 11 H -0.191 1.191 12 N -0.263 5.263 13 C -0.069 4.069 14 C 0.308 3.692 15 N -0.356 5.356 16 C 0.152 3.848 17 C -0.438 4.438 18 C -0.038 4.038 19 N -0.114 5.114 20 N -0.111 5.111 21 C 0.038 3.962 22 C -0.143 4.143 23 C -0.118 4.118 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.147 4.147 27 C 0.400 3.600 28 O -0.438 6.438 29 N -0.306 5.306 30 H 0.270 0.730 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.245 0.755 39 H 0.152 0.848 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.159 0.841 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.651 5.269 -6.035 8.439 hybrid contribution -0.014 -2.137 0.277 2.155 sum 2.638 3.131 -5.758 7.065 Atomic orbital electron populations 1.21955 0.96727 1.00376 1.00478 1.18893 0.91480 0.93444 0.78728 0.93400 1.21453 1.32214 1.13233 0.90922 0.92344 1.25454 0.95062 0.95516 1.01181 1.69951 1.36729 1.23267 1.24425 0.85724 0.78182 0.79150 0.79193 1.20956 1.21113 1.19092 1.47216 1.46016 1.12517 1.20574 1.22094 1.03703 0.78764 1.02362 1.18682 0.84504 0.85233 0.80824 1.67247 1.29904 1.05163 1.33247 1.19028 0.89513 0.86295 0.89923 1.19989 1.21882 0.97690 1.04218 1.24015 0.93696 0.87078 0.99028 1.77189 1.16512 1.22973 0.94681 1.45543 1.41299 1.05796 1.18426 1.17794 0.95614 0.91405 0.91417 1.21119 0.98072 0.95723 0.99394 1.21405 0.98163 0.97695 0.94525 1.21627 0.92906 0.99017 0.99930 1.21279 1.01127 0.93924 0.95961 1.21089 0.95018 0.99801 0.98742 1.15838 0.76936 0.85776 0.81462 1.90853 1.55662 1.69086 1.28201 1.44289 1.48116 1.17550 1.20636 0.72952 0.90801 0.95758 0.93374 0.92611 0.90941 0.88489 0.89183 0.75487 0.84785 0.81722 0.82168 0.84091 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 8.95 71.98 0.64 -4.96 16 2 C 0.28 12.05 2.64 44.24 0.12 12.16 16 3 H 0.05 2.46 6.73 -2.39 -0.02 2.44 16 4 C -0.54 -25.81 8.37 25.60 0.21 -25.59 16 5 H 0.06 2.75 7.65 -2.91 -0.02 2.72 16 6 C 0.03 1.43 5.30 84.65 0.45 1.88 16 7 N -0.91 -46.70 11.32 21.45 0.24 -46.46 16 8 Si 0.95 39.92 29.54 68.60 2.03 41.94 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 12 N -0.55 -19.44 2.82 -714.48 -2.01 -21.45 16 13 C 0.07 1.80 9.45 127.77 1.21 3.01 16 14 C 0.66 23.96 8.22 260.79 2.14 26.10 16 15 N -0.61 -25.18 7.85 -194.80 -1.53 -26.70 16 16 C 0.39 15.60 7.51 133.83 1.00 16.60 16 17 C -0.42 -15.23 6.16 -21.19 -0.13 -15.36 16 18 C 0.15 4.83 12.05 85.58 1.03 5.86 16 19 N -0.30 -10.22 12.22 -56.50 -0.69 -10.91 16 20 N -0.33 -12.53 3.75 -185.34 -0.70 -13.22 16 21 C 0.13 4.57 6.40 38.13 0.24 4.81 16 22 C -0.12 -3.59 9.76 22.39 0.22 -3.38 16 23 C -0.10 -2.27 10.04 22.25 0.22 -2.05 16 24 C -0.12 -2.69 10.04 22.29 0.22 -2.47 16 25 C -0.10 -3.04 10.04 22.25 0.22 -2.82 16 26 C -0.13 -4.48 9.37 22.39 0.21 -4.27 16 27 C 0.60 21.04 7.80 85.05 0.66 21.71 16 28 O -0.56 -20.77 17.97 -4.82 -0.09 -20.86 16 29 N -0.65 -20.04 5.16 -320.26 -1.65 -21.70 16 30 H 0.43 10.13 6.49 -92.71 -0.60 9.53 16 31 H 0.07 3.46 6.07 -2.38 -0.01 3.44 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.77 6.66 -2.39 -0.02 1.76 16 34 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 2.38 6.43 -2.39 -0.02 2.37 16 37 H 0.09 1.57 6.34 -2.39 -0.02 1.56 16 38 H 0.23 5.20 8.06 -2.91 -0.02 5.17 16 39 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 40 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 43 H 0.11 4.47 7.18 -2.91 -0.02 4.45 16 Total: -1.00 -64.72 362.47 4.76 -59.97 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.47 Total: 28.15 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: 8.69 Total: 31.24 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -6.34 Total: -140.44 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.09 Total: -20.86 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -64.72 4.76 -59.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.257 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds