Wall clock time and date at job start Tue Mar 31 2020 23:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 N 1.31128 * 126.54863 * 239.71264 * 4 2 1 6 6 C 1.34502 * 105.61199 * 179.91421 * 5 4 2 7 7 C 1.50698 * 126.28203 * 180.12546 * 6 5 4 8 8 C 1.50695 * 109.47503 * 270.23377 * 7 6 5 9 9 C 1.38238 * 120.00435 * 269.73761 * 8 7 6 10 10 C 1.38231 * 119.99617 * 179.76296 * 9 8 7 11 11 C 1.38236 * 120.00522 * 0.50397 * 10 9 8 12 12 C 1.38234 * 119.99551 * 359.74671 * 11 10 9 13 13 C 1.38231 * 120.00293 * 359.97438 * 12 11 10 14 14 N 1.29941 * 107.42415 * 0.35098 * 6 5 4 15 15 O 1.21299 * 110.25345 * 359.77684 * 14 6 5 16 16 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 17 17 C 1.35315 * 125.86760 * 325.00446 * 16 2 1 18 18 C 1.35360 * 106.17363 * 179.97438 * 17 16 2 19 19 C 1.50700 * 126.75084 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47180 * 125.00420 * 19 18 17 21 21 H 1.08006 * 119.99955 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00091 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00194 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99964 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47219 * 59.99947 * 24 22 20 26 26 H 1.48507 * 109.47376 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47425 * 299.99734 * 24 22 20 28 28 N 1.33774 * 106.49545 * 0.02562 * 18 17 16 29 29 N 1.28629 * 108.88679 * 359.73352 * 28 18 17 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47761 * 30.24317 * 7 6 5 34 34 H 1.09009 * 109.46868 * 150.24100 * 7 6 5 35 35 H 1.07991 * 119.99684 * 359.97438 * 9 8 7 36 36 H 1.08007 * 119.99556 * 180.22752 * 10 9 8 37 37 H 1.07997 * 119.99990 * 179.72311 * 11 10 9 38 38 H 1.08008 * 119.99524 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.00026 * 179.97438 * 13 12 11 40 40 H 1.07990 * 126.91260 * 359.97438 * 17 16 2 41 41 H 1.09004 * 109.47165 * 245.00716 * 19 18 17 42 42 H 1.09005 * 109.47123 * 5.00457 * 19 18 17 43 43 H 0.96997 * 120.00003 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 2.7936 -0.2023 2.1695 6 6 2.9822 -1.1937 3.0586 7 6 3.7897 -1.1113 4.3283 8 6 5.2185 -1.4942 4.0408 9 6 5.6167 -2.8133 4.1529 10 6 6.9262 -3.1651 3.8844 11 6 7.8401 -2.1965 3.5138 12 6 7.4432 -0.8767 3.4067 13 6 6.1324 -0.5256 3.6696 14 7 2.3443 -2.2370 2.6192 15 8 1.7919 -1.9804 1.5702 16 7 2.0183 -0.6907 -1.1961 17 6 1.4357 -1.7588 -1.7882 18 6 2.2125 -2.0705 -2.8520 19 6 1.9880 -3.1902 -3.8353 20 6 1.9576 -2.6314 -5.2346 21 1 2.0874 -1.5714 -5.3957 22 6 1.7630 -3.4733 -6.3089 23 7 1.6043 -4.7640 -6.1128 24 14 1.7246 -2.7805 -8.0433 25 1 3.0185 -2.1146 -8.3391 26 1 1.5034 -3.8839 -9.0124 27 1 0.6219 -1.7925 -8.1575 28 7 3.2193 -1.1897 -2.8581 29 7 3.0725 -0.3825 -1.8674 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.7572 -0.0924 4.7142 34 1 3.3727 -1.7937 5.0690 35 1 4.9038 -3.5692 4.4471 36 1 7.2363 -4.1963 3.9685 37 1 8.8643 -2.4708 3.3084 38 1 8.1575 -0.1198 3.1175 39 1 5.8224 0.5056 3.5863 40 1 0.5327 -2.2615 -1.4751 41 1 2.7973 -3.9154 -3.7511 42 1 1.0381 -3.6790 -3.6186 43 1 1.4678 -5.3563 -6.8687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603224924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:20 Heat of formation + Delta-G solvation = 191.889649 kcal Electronic energy + Delta-G solvation = -27863.119173 eV Core-core repulsion = 23914.132018 eV Total energy + Delta-G solvation = -3948.987155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.93460 -42.70993 -39.58424 -36.73129 -36.28829 -33.71995 -33.31909 -31.90681 -31.26101 -31.16830 -30.24105 -27.97870 -27.66607 -25.47333 -24.09808 -23.40085 -22.99275 -22.74400 -21.65571 -20.70495 -20.19619 -18.47673 -17.98560 -17.05277 -16.81225 -16.68609 -16.10330 -15.51463 -15.39241 -14.93037 -14.87133 -14.53933 -14.20715 -13.73870 -13.70377 -13.50606 -13.13127 -13.00427 -12.75854 -12.58207 -12.51707 -12.23722 -12.09763 -11.96079 -11.73313 -11.40773 -11.39264 -11.27971 -11.07938 -10.75549 -10.69885 -10.38052 -10.14505 -9.77471 -9.63428 -9.38127 -9.19285 -9.09550 -8.46971 -8.20992 -5.99881 -4.00964 0.68062 0.97527 1.13230 1.77608 1.90446 2.50198 2.52103 3.18920 3.35863 3.38088 3.41578 3.47822 3.49282 3.74914 4.12901 4.31768 4.37277 4.50393 4.54345 4.62250 4.73054 4.86029 4.95074 4.97151 5.07081 5.14180 5.19716 5.22906 5.34013 5.36413 5.36984 5.54764 5.59646 5.70172 5.72645 5.75921 5.97357 6.14164 6.16641 6.24247 6.25764 6.70032 6.94184 7.03575 7.49977 7.58932 7.80353 7.97461 8.34432 9.01825 9.15667 9.61982 11.11178 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.002548 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.056768 B =10987.611792 C =12049.642528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.253 3.747 3 H 0.152 0.848 4 C 0.165 3.835 5 N -0.456 5.456 6 C 0.175 3.825 7 C 0.014 3.986 8 C -0.094 4.094 9 C -0.106 4.106 10 C -0.121 4.121 11 C -0.115 4.115 12 C -0.120 4.120 13 C -0.101 4.101 14 N -0.370 5.370 15 O 0.095 5.905 16 N -0.314 5.314 17 C -0.073 4.073 18 C 0.040 3.960 19 C 0.091 3.909 20 C -0.505 4.505 21 H 0.059 0.941 22 C 0.058 3.942 23 N -0.898 5.898 24 Si 0.897 3.103 25 H -0.275 1.275 26 H -0.288 1.288 27 H -0.277 1.277 28 N -0.249 5.249 29 N -0.100 5.100 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.186 0.814 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 8.612 25.188 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.147 3.853 3 H 0.170 0.830 4 C -0.057 4.057 5 N -0.190 5.190 6 C -0.097 4.097 7 C -0.024 4.024 8 C -0.095 4.095 9 C -0.124 4.124 10 C -0.139 4.139 11 C -0.133 4.133 12 C -0.138 4.138 13 C -0.119 4.119 14 N -0.075 5.075 15 O 0.034 5.966 16 N -0.111 5.111 17 C -0.220 4.220 18 C -0.095 4.095 19 C 0.053 3.947 20 C -0.544 4.544 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.537 5.537 24 Si 0.725 3.275 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.203 1.203 28 N -0.117 5.117 29 N -0.078 5.078 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.203 0.797 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.066 8.932 25.631 27.315 hybrid contribution -0.980 -0.399 -0.955 1.425 sum 2.086 8.532 24.676 26.193 Atomic orbital electron populations 1.22289 0.89180 1.05551 1.05459 1.19671 0.96477 0.95425 0.73700 0.83005 1.28720 0.95236 0.83339 0.98444 1.71850 1.14446 1.29974 1.02721 1.25660 0.99524 0.84905 0.99657 1.18886 0.89531 1.04963 0.89063 1.19527 0.93934 0.94088 1.01991 1.21086 0.96390 0.95360 0.99563 1.21169 0.93402 0.99645 0.99642 1.21242 0.99803 0.93237 0.99003 1.21188 0.96137 0.96562 0.99910 1.21099 0.93175 0.99412 0.98186 1.74652 1.12185 1.23121 0.97495 1.85339 1.53591 1.28861 1.28775 1.47136 1.19885 1.23413 1.20647 1.23377 1.04527 0.94885 0.99212 1.23087 0.90953 0.99262 0.96240 1.17762 0.98103 0.88482 0.90362 1.20988 1.49059 0.94293 0.90064 0.92266 1.24967 0.95305 0.94799 0.99265 1.69936 1.49655 1.02790 1.31330 0.86572 0.78714 0.78400 0.83845 1.20091 1.21324 1.20296 1.75107 1.21882 1.03280 1.11419 1.78320 1.03763 1.22236 1.03436 0.88649 0.89001 0.89832 0.87448 0.87934 0.85908 0.85791 0.85865 0.85726 0.85612 0.79708 0.94202 0.94327 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 8.81 37.16 0.33 -0.88 16 2 C 0.25 2.77 3.79 -69.08 -0.26 2.51 16 3 H 0.15 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.17 2.05 7.35 -13.05 -0.10 1.96 16 5 N -0.46 -5.78 11.55 -9.87 -0.11 -5.89 16 6 C 0.18 2.13 7.45 -156.37 -1.17 0.97 16 7 C 0.01 0.13 5.97 -29.04 -0.17 -0.05 16 8 C -0.09 -0.96 5.12 -104.62 -0.54 -1.49 16 9 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 10 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 11 C -0.11 -1.09 10.05 -39.58 -0.40 -1.48 16 12 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 13 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 14 N -0.37 -5.05 12.16 30.90 0.38 -4.68 16 15 O 0.10 1.30 11.31 18.10 0.20 1.50 16 16 N -0.31 -5.04 3.24 -55.89 -0.18 -5.22 16 17 C -0.07 -1.27 10.61 -17.04 -0.18 -1.45 16 18 C 0.04 0.91 6.44 -82.77 -0.53 0.37 16 19 C 0.09 2.36 5.55 -29.04 -0.16 2.20 16 20 C -0.51 -14.38 9.09 -34.44 -0.31 -14.70 16 21 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 24 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 N -0.25 -5.85 12.40 33.29 0.41 -5.44 16 29 N -0.10 -2.00 13.16 60.35 0.79 -1.21 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.60 7.17 -51.93 -0.37 0.23 16 33 H 0.11 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.10 0.73 8.08 -51.92 -0.42 0.31 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.19 2.54 7.30 -52.49 -0.38 2.15 16 41 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -35.26 380.82 -7.57 -42.83 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.36 Total: -2.32 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -5.15 Total: -16.48 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 2.02 Total: -48.15 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.20 Total: 1.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.26 -7.57 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.716 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds