Wall clock time and date at job start Tue Mar 31 2020 22:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47305 * 2 1 4 4 O 1.33632 * 125.80575 * 270.02412 * 3 2 1 5 5 C 1.34213 * 110.92410 * 179.97438 * 4 3 2 6 6 C 1.50702 * 125.42933 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46697 * 270.02383 * 6 5 4 8 8 C 1.36935 * 120.00251 * 88.43319 * 7 6 5 9 9 H 1.08000 * 120.00157 * 217.45536 * 8 7 6 10 10 C 1.38812 * 120.00157 * 37.44516 * 8 7 6 11 11 N 1.31623 * 119.99846 * 22.96427 * 10 8 7 12 12 Si 1.86794 * 120.00333 * 202.96526 * 10 8 7 13 13 H 1.48503 * 109.47055 * 60.00109 * 12 10 8 14 14 H 1.48504 * 109.47561 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47447 * 300.00137 * 12 10 8 16 16 C 1.46504 * 119.99992 * 268.42483 * 7 6 5 17 17 C 1.52999 * 109.46658 * 90.00629 * 16 7 6 18 18 C 1.50696 * 109.47049 * 180.02562 * 17 16 7 19 19 O 1.20835 * 120.00038 * 359.97438 * 18 17 16 20 20 O 1.34229 * 120.00100 * 179.97438 * 18 17 16 21 21 C 1.45205 * 116.99722 * 179.97438 * 20 18 17 22 22 C 1.34157 * 109.14463 * 0.02562 * 5 4 3 23 23 C 1.36488 * 125.81054 * 90.00172 * 3 2 1 24 24 C 1.47236 * 127.20204 * 0.03681 * 23 3 2 25 25 O 1.21534 * 120.00047 * 0.02562 * 24 23 3 26 26 O 1.34771 * 120.00188 * 180.02562 * 24 23 3 27 27 C 1.45196 * 117.00018 * 180.02562 * 26 24 23 28 28 H 1.09001 * 109.46603 * 300.00366 * 1 2 3 29 29 H 1.09003 * 109.47055 * 60.00008 * 1 2 3 30 30 H 1.09000 * 109.46834 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47453 * 239.99961 * 2 1 3 32 32 H 1.09003 * 109.47055 * 119.99992 * 2 1 3 33 33 H 1.09000 * 109.47157 * 30.02193 * 6 5 4 34 34 H 1.09000 * 109.47434 * 150.02313 * 6 5 4 35 35 H 0.96996 * 120.00012 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47348 * 210.00207 * 16 7 6 37 37 H 1.09003 * 109.47167 * 330.00723 * 16 7 6 38 38 H 1.09002 * 109.47211 * 299.99423 * 17 16 7 39 39 H 1.08991 * 109.47663 * 59.99979 * 17 16 7 40 40 H 1.09000 * 109.47556 * 60.00471 * 21 20 18 41 41 H 1.09004 * 109.46605 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47625 * 300.00071 * 21 20 18 43 43 H 1.08006 * 127.02830 * 179.73826 * 22 5 4 44 44 H 1.09008 * 109.47152 * 179.97438 * 27 26 24 45 45 H 1.08998 * 109.46845 * 299.99635 * 27 26 24 46 46 H 1.08996 * 109.47708 * 59.99820 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2926 2.1580 -1.0838 5 6 2.7246 3.3811 -0.7391 6 6 3.1112 4.4744 -1.7015 7 7 4.5387 4.3682 -2.0133 8 6 4.9558 3.5790 -3.0518 9 1 5.8695 3.0099 -2.9644 10 6 4.2041 3.5103 -4.2168 11 7 3.3795 4.4883 -4.5266 12 14 4.3627 2.0298 -5.3447 13 1 3.9874 0.7996 -4.6026 14 1 3.4611 2.1984 -6.5127 15 1 5.7662 1.9148 -5.8162 16 6 5.5200 5.1064 -1.2143 17 6 5.9744 4.2405 -0.0376 18 6 6.9833 5.0000 0.7847 19 8 7.3062 6.1189 0.4624 20 8 7.5233 4.4336 1.8753 21 6 8.4886 5.2234 2.6188 22 6 2.7585 3.4749 0.5988 23 6 2.2986 2.1737 1.1069 24 6 2.1560 1.7679 2.5150 25 8 1.7624 0.6511 2.7886 26 8 2.4619 2.6348 3.5005 27 6 2.2978 2.1664 4.8649 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.5304 4.3735 -2.6184 34 1 2.9094 5.4452 -1.2487 35 1 2.8545 4.4405 -5.3408 36 1 6.3803 5.3560 -1.8353 37 1 5.0659 6.0228 -0.8371 38 1 5.1140 3.9910 0.5835 39 1 6.4283 3.3242 -0.4146 40 1 8.0150 6.1404 2.9693 41 1 8.8464 4.6493 3.4736 42 1 9.3294 5.4731 1.9717 43 1 3.0649 4.3298 1.1833 44 1 2.5781 2.9599 5.5577 45 1 1.2567 1.8894 5.0312 46 1 2.9356 1.2981 5.0303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:14 Heat of formation + Delta-G solvation = -159.444796 kcal Electronic energy + Delta-G solvation = -30660.570028 eV Core-core repulsion = 26324.453446 eV Total energy + Delta-G solvation = -4336.116582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.55148 -41.43657 -41.13045 -38.14035 -37.51390 -37.32397 -35.02496 -34.14877 -33.73496 -32.16427 -30.52451 -28.73898 -28.52944 -27.28727 -25.99539 -25.21122 -23.64115 -22.78661 -22.37634 -21.48275 -20.50973 -18.99437 -18.78965 -18.38612 -17.67603 -17.55232 -17.52148 -17.24092 -16.93531 -16.72821 -16.63395 -15.74450 -15.50328 -15.32830 -15.08178 -14.72803 -14.52361 -14.30184 -14.22484 -13.99539 -13.79455 -13.60549 -13.40181 -13.28266 -13.08071 -12.91273 -12.81512 -12.73169 -12.55913 -12.46586 -12.23135 -12.06677 -11.89902 -11.84703 -11.76310 -11.71782 -11.54501 -11.52394 -10.73572 -10.59044 -9.37340 -8.74309 -7.93828 -5.54214 0.15102 1.08105 1.20295 1.46939 1.50613 1.55872 1.64604 1.81245 2.00913 2.04607 2.50128 3.19693 3.52256 3.63671 3.75002 3.96874 3.99864 4.12839 4.17941 4.27249 4.31810 4.32991 4.34910 4.36034 4.36797 4.44812 4.56211 4.62680 4.69950 4.71509 4.73708 4.80209 4.92721 4.98475 5.04252 5.07269 5.21629 5.23642 5.34030 5.35688 5.42934 5.55861 5.67443 6.23280 6.41905 6.72713 6.76118 7.05703 7.69843 8.22751 9.05671 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.006701 B = 0.005729 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4177.387883 B = 4886.146720 C = 8286.600836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.054 4.054 3 C 0.075 3.925 4 O -0.176 6.176 5 C 0.001 3.999 6 C 0.209 3.791 7 N -0.577 5.577 8 C -0.279 4.279 9 H 0.058 0.942 10 C -0.017 4.017 11 N -0.905 5.905 12 Si 0.949 3.051 13 H -0.280 1.280 14 H -0.290 1.290 15 H -0.275 1.275 16 C 0.164 3.836 17 C -0.127 4.127 18 C 0.472 3.528 19 O -0.536 6.536 20 O -0.368 6.368 21 C 0.027 3.973 22 C -0.184 4.184 23 C -0.250 4.250 24 C 0.547 3.453 25 O -0.529 6.529 26 O -0.359 6.359 27 C 0.030 3.970 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.257 0.743 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.131 0.869 42 H 0.060 0.940 43 H 0.168 0.832 44 H 0.131 0.869 45 H 0.066 0.934 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -4.416 16.825 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C 0.022 3.978 4 O -0.072 6.072 5 C -0.050 4.050 6 C 0.082 3.918 7 N -0.296 5.296 8 C -0.409 4.409 9 H 0.076 0.924 10 C -0.216 4.216 11 N -0.547 5.547 12 Si 0.776 3.224 13 H -0.206 1.206 14 H -0.216 1.216 15 H -0.200 1.200 16 C 0.038 3.962 17 C -0.167 4.167 18 C 0.317 3.683 19 O -0.426 6.426 20 O -0.284 6.284 21 C -0.066 4.066 22 C -0.204 4.204 23 C -0.253 4.253 24 C 0.395 3.605 25 O -0.421 6.421 26 O -0.275 6.275 27 C -0.063 4.063 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.150 0.850 42 H 0.079 0.921 43 H 0.186 0.814 44 H 0.149 0.851 45 H 0.084 0.916 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.071 -4.398 16.396 17.009 hybrid contribution 0.275 -0.434 -0.459 0.689 sum -0.795 -4.832 15.937 16.672 Atomic orbital electron populations 1.21656 0.92106 1.03801 1.01780 1.20509 0.97972 0.85303 1.05300 1.23361 0.96096 0.95159 0.83215 1.83884 1.64266 1.23903 1.35120 1.24386 0.99341 0.84979 0.96276 1.19613 0.86297 0.90038 0.95900 1.43867 1.00764 1.52634 1.32291 1.19105 1.09400 1.20076 0.92331 0.92444 1.25718 0.99675 0.98739 0.97467 1.70082 1.29208 1.30378 1.25015 0.85649 0.77753 0.80726 0.78226 1.20627 1.21566 1.20032 1.20673 0.92936 0.92189 0.90443 1.22144 0.96738 1.00639 0.97184 1.24045 0.80090 0.85184 0.79003 1.90626 1.60899 1.21220 1.69866 1.86541 1.55271 1.48194 1.38435 1.23545 0.90258 0.96765 0.96074 1.22564 1.07241 0.97852 0.92748 1.20202 1.17233 0.97359 0.90474 1.19901 0.73053 0.82192 0.85354 1.90765 1.45049 1.21627 1.84674 1.86578 1.79081 1.44116 1.17722 1.23588 1.02761 1.02647 0.77297 0.93017 0.92729 0.89001 0.88983 0.87251 0.90109 0.89516 0.93414 0.93622 0.92696 0.87365 0.88517 0.91779 0.85049 0.92148 0.81414 0.85054 0.91571 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.89 71.98 0.71 -2.50 16 2 C -0.05 -1.49 5.94 29.85 0.18 -1.31 16 3 C 0.08 2.62 6.63 25.28 0.17 2.79 16 4 O -0.18 -7.23 10.52 4.68 0.05 -7.19 16 5 C 0.00 0.06 6.78 24.76 0.17 0.23 16 6 C 0.21 9.06 5.87 85.63 0.50 9.56 16 7 N -0.58 -26.63 2.41 -706.32 -1.70 -28.33 16 8 C -0.28 -14.44 9.44 84.03 0.79 -13.65 16 9 H 0.06 2.98 7.93 -2.91 -0.02 2.96 16 10 C -0.02 -0.88 4.93 84.86 0.42 -0.46 16 11 N -0.90 -49.73 11.54 21.65 0.25 -49.48 16 12 Si 0.95 42.99 29.61 68.60 2.03 45.03 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 C 0.16 6.60 5.00 86.38 0.43 7.04 16 17 C -0.13 -4.37 6.13 29.85 0.18 -4.19 16 18 C 0.47 15.49 7.96 71.23 0.57 16.06 16 19 O -0.54 -19.93 15.73 21.94 0.35 -19.59 16 20 O -0.37 -10.32 10.57 -51.41 -0.54 -10.86 16 21 C 0.03 0.53 10.56 113.37 1.20 1.72 16 22 C -0.18 -6.32 9.07 23.65 0.21 -6.10 16 23 C -0.25 -8.48 6.32 -19.01 -0.12 -8.60 16 24 C 0.55 17.01 7.95 70.19 0.56 17.57 16 25 O -0.53 -16.95 14.64 19.73 0.29 -16.66 16 26 O -0.36 -9.58 10.48 -56.82 -0.60 -10.18 16 27 C 0.03 0.53 10.57 113.37 1.20 1.72 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.11 2.96 6.49 -2.39 -0.02 2.95 16 33 H 0.08 4.07 5.56 -2.39 -0.01 4.06 16 34 H 0.09 3.37 7.87 -2.39 -0.02 3.35 16 35 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 36 H 0.05 1.99 8.00 -2.39 -0.02 1.97 16 37 H 0.05 2.12 7.84 -2.39 -0.02 2.10 16 38 H 0.11 3.58 5.68 -2.39 -0.01 3.57 16 39 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 41 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.20 8.13 -2.39 -0.02 1.19 16 43 H 0.17 5.06 7.76 -2.91 -0.02 5.04 16 44 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -64.90 394.83 8.28 -56.61 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.99 Total: 20.77 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 7.17 Total: 19.88 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.45 Total: -77.81 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -0.46 Total: -64.48 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.03 kcal Total: -64.90 8.28 -56.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.833 kcal (2) G-P(sol) polarization free energy of solvation -64.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds