Wall clock time and date at job start Wed Apr 1 2020 00:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47193 * 2 1 4 4 C 1.35621 * 125.67489 * 260.94526 * 3 2 1 5 5 C 1.35517 * 108.85318 * 180.20165 * 4 3 2 6 6 Cl 1.73601 * 126.07909 * 179.77010 * 5 4 3 7 7 C 1.39889 * 107.84858 * 359.64290 * 5 4 3 8 8 C 1.37636 * 125.67498 * 80.92001 * 3 2 1 9 9 C 1.46673 * 126.22337 * 0.03969 * 8 3 2 10 10 O 1.21690 * 119.99780 * 5.28671 * 9 8 3 11 11 N 1.34777 * 119.99607 * 185.28483 * 9 8 3 12 12 C 1.46499 * 119.99685 * 184.76472 * 11 9 8 13 13 H 1.09000 * 109.50318 * 34.99628 * 12 11 9 14 14 C 1.53199 * 109.49622 * 274.93239 * 12 11 9 15 15 N 1.46926 * 108.77679 * 294.68495 * 14 12 11 16 16 C 1.36938 * 120.62748 * 126.36811 * 15 14 12 17 17 H 1.07995 * 119.99289 * 211.42840 * 16 15 14 18 18 C 1.38808 * 119.99987 * 31.43280 * 16 15 14 19 19 N 1.31618 * 120.00489 * 10.59255 * 18 16 15 20 20 Si 1.86803 * 119.99696 * 190.59273 * 18 16 15 21 21 H 1.48500 * 109.47178 * 89.99951 * 20 18 16 22 22 H 1.48501 * 109.47191 * 209.99818 * 20 18 16 23 23 H 1.48497 * 109.47180 * 330.00071 * 20 18 16 24 24 C 1.46923 * 118.73442 * 306.39054 * 15 14 12 25 25 C 1.53184 * 108.77932 * 53.61163 * 24 15 14 26 26 C 1.53043 * 109.49850 * 155.06482 * 12 11 9 27 27 H 1.09004 * 109.45971 * 178.60274 * 26 12 11 28 28 C 1.52997 * 109.46023 * 298.56452 * 26 12 11 29 29 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47391 * 299.99607 * 1 2 3 31 31 H 1.09003 * 109.47239 * 60.00670 * 1 2 3 32 32 H 1.09003 * 109.47436 * 239.99512 * 2 1 3 33 33 H 1.09001 * 109.47232 * 119.99867 * 2 1 3 34 34 H 1.08007 * 125.57778 * 359.94308 * 4 3 2 35 35 H 1.08001 * 126.45204 * 180.11860 * 7 5 4 36 36 H 0.96998 * 120.00050 * 4.76201 * 11 9 8 37 37 H 1.09004 * 109.58318 * 54.47593 * 14 12 11 38 38 H 1.09002 * 109.58478 * 174.89322 * 14 12 11 39 39 H 0.96991 * 119.99981 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.58108 * 173.39276 * 24 15 14 41 41 H 1.08995 * 109.58878 * 293.67342 * 24 15 14 42 42 H 1.09003 * 109.50328 * 65.30830 * 25 24 15 43 43 H 1.09000 * 109.50079 * 185.37812 * 25 24 15 44 44 H 1.09001 * 109.46983 * 59.99716 * 28 26 12 45 45 H 1.08997 * 109.47289 * 179.97438 * 28 26 12 46 46 H 1.09006 * 109.46699 * 300.00080 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4454 2.0691 -1.0880 5 6 2.8238 3.3112 -0.7000 6 17 3.4477 4.5592 -1.7329 7 6 2.6197 3.4100 0.6804 8 6 2.1195 2.1968 1.1041 9 6 1.7609 1.8402 2.4809 10 8 1.4190 0.7027 2.7453 11 7 1.8102 2.7725 3.4529 12 6 1.5537 2.3937 4.8447 13 1 1.9434 1.3922 5.0270 14 6 0.0449 2.4112 5.1096 15 7 -0.4410 3.7923 4.9856 16 6 -1.4839 4.0926 4.1505 17 1 -1.5275 5.0570 3.6665 18 6 -2.4848 3.1574 3.9261 19 7 -2.5486 2.0711 4.6665 20 14 -3.7414 3.4407 2.5732 21 1 -3.2459 2.8472 1.3053 22 1 -5.0273 2.8006 2.9500 23 1 -3.9498 4.8993 2.3887 24 6 0.2137 4.8449 5.7744 25 6 1.7204 4.8002 5.5020 26 6 2.2441 3.3887 5.7804 27 1 2.0324 3.1206 6.8156 28 6 3.7550 3.3481 5.5425 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.4823 1.6879 -2.0979 35 1 2.8201 4.2726 1.2986 36 1 2.0155 3.6942 3.2311 37 1 -0.4614 1.7788 4.3804 38 1 -0.1536 2.0429 6.1161 39 1 -3.2483 1.4179 4.5100 40 1 -0.1814 5.8183 5.4837 41 1 0.0267 4.6766 6.8349 42 1 1.9098 5.0593 4.4603 43 1 2.2290 5.5120 6.1522 44 1 3.9670 3.6155 4.5073 45 1 4.2468 4.0570 6.2085 46 1 4.1273 2.3432 5.7418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968655558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:38 Heat of formation + Delta-G solvation = 19.662298 kcal Electronic energy + Delta-G solvation = -29041.846924 eV Core-core repulsion = 25186.498924 eV Total energy + Delta-G solvation = -3855.348000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41210 -39.28332 -37.33601 -36.36835 -34.33619 -33.90436 -32.70112 -31.02244 -29.99019 -29.12933 -28.46968 -27.21910 -24.13913 -23.61942 -22.85431 -21.83317 -21.07742 -20.63957 -19.44113 -18.64587 -17.82888 -16.71089 -15.81962 -15.35082 -15.19180 -14.84973 -14.50063 -14.20726 -13.96923 -13.91216 -13.69942 -13.61373 -13.27711 -13.02749 -12.91917 -12.71202 -12.61927 -12.51083 -11.97104 -11.91554 -11.57561 -11.41725 -11.32978 -11.12072 -11.06635 -10.86600 -10.81971 -10.75635 -10.51244 -10.20051 -9.94343 -9.69760 -9.52125 -9.39923 -8.62710 -8.46083 -8.43941 -8.08731 -6.57661 -5.74498 -3.22842 1.61620 2.15751 2.53300 2.91710 3.37950 3.44899 3.45280 3.72785 3.86489 4.50562 4.71475 4.87344 5.05729 5.10823 5.21944 5.24486 5.26605 5.33720 5.36065 5.46129 5.56656 5.61813 5.75142 5.88112 5.89528 5.94131 6.00100 6.02564 6.16804 6.29272 6.34430 6.37380 6.45071 6.50201 6.56753 6.66990 6.77320 6.86438 6.90721 7.01216 7.12161 7.39245 7.72609 7.82539 8.08331 8.51547 8.73038 9.24881 9.86916 10.43968 11.32702 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008871 B = 0.005039 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.687292 B = 5555.859068 C = 6654.834592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.101 3.899 3 N -0.399 5.399 4 C 0.022 3.978 5 C -0.121 4.121 6 Cl -0.058 7.058 7 C -0.136 4.136 8 C -0.016 4.016 9 C 0.585 3.415 10 O -0.548 6.548 11 N -0.683 5.683 12 C 0.128 3.872 13 H 0.075 0.925 14 C 0.161 3.839 15 N -0.587 5.587 16 C -0.250 4.250 17 H 0.062 0.938 18 C 0.009 3.991 19 N -0.900 5.900 20 Si 0.898 3.102 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.142 3.858 25 C -0.129 4.129 26 C -0.094 4.094 27 H 0.078 0.922 28 C -0.145 4.145 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.173 0.827 35 H 0.149 0.851 36 H 0.397 0.603 37 H 0.100 0.900 38 H 0.025 0.975 39 H 0.253 0.747 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.284 -0.242 -7.565 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.072 5.072 4 C -0.114 4.114 5 C -0.154 4.154 6 Cl -0.030 7.030 7 C -0.162 4.162 8 C -0.130 4.130 9 C 0.372 3.628 10 O -0.428 6.428 11 N -0.332 5.332 12 C 0.022 3.978 13 H 0.093 0.907 14 C 0.035 3.965 15 N -0.309 5.309 16 C -0.380 4.380 17 H 0.080 0.920 18 C -0.190 4.190 19 N -0.544 5.544 20 Si 0.728 3.272 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.015 3.985 25 C -0.169 4.169 26 C -0.113 4.113 27 H 0.096 0.904 28 C -0.202 4.202 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.190 0.810 35 H 0.167 0.833 36 H 0.233 0.767 37 H 0.118 0.882 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.809 -1.456 -7.397 14.863 hybrid contribution -0.625 0.739 -1.043 1.423 sum 12.184 -0.716 -8.440 14.839 Atomic orbital electron populations 1.22096 0.93492 1.03206 1.03618 1.22085 0.96433 0.78679 1.04720 1.44026 1.45653 1.11904 1.05620 1.21594 1.05300 0.92047 0.92480 1.19828 1.12413 0.91277 0.91866 1.98305 1.86139 1.51872 1.66681 1.21142 1.04827 0.96853 0.93403 1.20274 1.11905 0.91578 0.89279 1.16745 0.77876 0.85381 0.82847 1.90775 1.48587 1.20457 1.82942 1.45502 1.69734 1.10938 1.07058 1.21854 1.00147 0.96981 0.78788 0.90669 1.21219 0.87473 0.87531 1.00299 1.43930 1.36376 1.02564 1.48064 1.19074 0.98640 1.01140 1.19143 0.92049 1.25101 0.97059 0.98195 0.98659 1.69943 1.34175 1.11299 1.38988 0.86364 0.81091 0.77730 0.82014 1.21581 1.21723 1.20435 1.20941 0.89996 0.93235 0.94279 1.22095 0.99051 0.95191 1.00532 1.21333 0.94067 0.96254 0.99665 0.90354 1.21856 0.95977 1.01086 1.01305 0.90673 0.90481 0.92542 0.89463 0.87357 0.80978 0.83288 0.76711 0.88230 0.95736 0.93672 0.92826 0.96415 0.92725 0.92736 0.92964 0.93111 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.16 37.16 0.38 -1.95 16 2 C 0.10 1.27 6.11 -4.04 -0.02 1.25 16 3 N -0.40 -5.70 2.77 -112.83 -0.31 -6.02 16 4 C 0.02 0.28 11.34 -16.85 -0.19 0.09 16 5 C -0.12 -1.64 6.66 -39.94 -0.27 -1.90 16 6 Cl -0.06 -0.71 29.30 -51.86 -1.52 -2.23 16 7 C -0.14 -2.00 10.34 -39.09 -0.40 -2.40 16 8 C -0.02 -0.26 6.88 -81.98 -0.56 -0.82 16 9 C 0.59 10.91 7.74 -12.86 -0.10 10.82 16 10 O -0.55 -11.53 13.92 5.20 0.07 -11.46 16 11 N -0.68 -11.99 4.23 -54.99 -0.23 -12.23 16 12 C 0.13 2.36 2.20 -67.81 -0.15 2.21 16 13 H 0.08 1.42 7.65 -51.93 -0.40 1.02 16 14 C 0.16 3.78 4.85 -3.71 -0.02 3.76 16 15 N -0.59 -13.96 2.90 -172.32 -0.50 -14.46 16 16 C -0.25 -6.70 9.58 -15.06 -0.14 -6.85 16 17 H 0.06 1.64 7.85 -52.49 -0.41 1.22 16 18 C 0.01 0.25 5.05 -17.43 -0.09 0.16 16 19 N -0.90 -26.19 11.05 55.49 0.61 -25.58 16 20 Si 0.90 22.11 29.57 -169.99 -5.03 17.08 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.14 2.79 6.52 -3.72 -0.02 2.76 16 25 C -0.13 -2.00 5.20 -26.58 -0.14 -2.14 16 26 C -0.09 -1.43 2.48 -90.54 -0.22 -1.66 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 C -0.14 -1.82 9.05 37.16 0.34 -1.48 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.43 7.57 -51.93 -0.39 1.03 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.11 1.51 6.74 -51.93 -0.35 1.16 16 34 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.15 1.95 7.49 -52.49 -0.39 1.56 16 36 H 0.40 6.43 5.58 -40.82 -0.23 6.20 16 37 H 0.10 2.75 6.08 -51.93 -0.32 2.44 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.65 7.54 -51.93 -0.39 0.25 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -30.67 379.67 -9.79 -40.46 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.99 Total: 6.86 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.62 Total: 1.84 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.43 Total: -58.28 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.52 Total: -2.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.67 -9.79 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968655558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.126 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds