Wall clock time and date at job start Wed Apr 1 2020 00:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47193 * 2 1 4 4 C 1.35621 * 125.67489 * 260.94526 * 3 2 1 5 5 C 1.35517 * 108.85318 * 180.20165 * 4 3 2 6 6 Cl 1.73601 * 126.07909 * 179.77010 * 5 4 3 7 7 C 1.39889 * 107.84858 * 359.64290 * 5 4 3 8 8 C 1.37636 * 125.67498 * 80.92001 * 3 2 1 9 9 C 1.46673 * 126.22337 * 0.03969 * 8 3 2 10 10 O 1.21690 * 119.99780 * 5.28671 * 9 8 3 11 11 N 1.34777 * 119.99607 * 185.28483 * 9 8 3 12 12 C 1.46499 * 119.99685 * 184.76472 * 11 9 8 13 13 H 1.09000 * 109.50318 * 34.99628 * 12 11 9 14 14 C 1.53199 * 109.49622 * 274.93239 * 12 11 9 15 15 N 1.46926 * 108.77679 * 294.68495 * 14 12 11 16 16 C 1.36938 * 120.62748 * 126.36811 * 15 14 12 17 17 H 1.07995 * 119.99289 * 211.42840 * 16 15 14 18 18 C 1.38808 * 119.99987 * 31.43280 * 16 15 14 19 19 N 1.31618 * 120.00489 * 10.59255 * 18 16 15 20 20 Si 1.86803 * 119.99696 * 190.59273 * 18 16 15 21 21 H 1.48500 * 109.47178 * 89.99951 * 20 18 16 22 22 H 1.48501 * 109.47191 * 209.99818 * 20 18 16 23 23 H 1.48497 * 109.47180 * 330.00071 * 20 18 16 24 24 C 1.46923 * 118.73442 * 306.39054 * 15 14 12 25 25 C 1.53184 * 108.77932 * 53.61163 * 24 15 14 26 26 C 1.53043 * 109.49850 * 155.06482 * 12 11 9 27 27 H 1.09004 * 109.45971 * 178.60274 * 26 12 11 28 28 C 1.52997 * 109.46023 * 298.56452 * 26 12 11 29 29 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47391 * 299.99607 * 1 2 3 31 31 H 1.09003 * 109.47239 * 60.00670 * 1 2 3 32 32 H 1.09003 * 109.47436 * 239.99512 * 2 1 3 33 33 H 1.09001 * 109.47232 * 119.99867 * 2 1 3 34 34 H 1.08007 * 125.57778 * 359.94308 * 4 3 2 35 35 H 1.08001 * 126.45204 * 180.11860 * 7 5 4 36 36 H 0.96998 * 120.00050 * 4.76201 * 11 9 8 37 37 H 1.09004 * 109.58318 * 54.47593 * 14 12 11 38 38 H 1.09002 * 109.58478 * 174.89322 * 14 12 11 39 39 H 0.96991 * 119.99981 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.58108 * 173.39276 * 24 15 14 41 41 H 1.08995 * 109.58878 * 293.67342 * 24 15 14 42 42 H 1.09003 * 109.50328 * 65.30830 * 25 24 15 43 43 H 1.09000 * 109.50079 * 185.37812 * 25 24 15 44 44 H 1.09001 * 109.46983 * 59.99716 * 28 26 12 45 45 H 1.08997 * 109.47289 * 179.97438 * 28 26 12 46 46 H 1.09006 * 109.46699 * 300.00080 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4454 2.0691 -1.0880 5 6 2.8238 3.3112 -0.7000 6 17 3.4477 4.5592 -1.7329 7 6 2.6197 3.4100 0.6804 8 6 2.1195 2.1968 1.1041 9 6 1.7609 1.8402 2.4809 10 8 1.4190 0.7027 2.7453 11 7 1.8102 2.7725 3.4529 12 6 1.5537 2.3937 4.8447 13 1 1.9434 1.3922 5.0270 14 6 0.0449 2.4112 5.1096 15 7 -0.4410 3.7923 4.9856 16 6 -1.4839 4.0926 4.1505 17 1 -1.5275 5.0570 3.6665 18 6 -2.4848 3.1574 3.9261 19 7 -2.5486 2.0711 4.6665 20 14 -3.7414 3.4407 2.5732 21 1 -3.2459 2.8472 1.3053 22 1 -5.0273 2.8006 2.9500 23 1 -3.9498 4.8993 2.3887 24 6 0.2137 4.8449 5.7744 25 6 1.7204 4.8002 5.5020 26 6 2.2441 3.3887 5.7804 27 1 2.0324 3.1206 6.8156 28 6 3.7550 3.3481 5.5425 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.4823 1.6879 -2.0979 35 1 2.8201 4.2726 1.2986 36 1 2.0155 3.6942 3.2311 37 1 -0.4614 1.7788 4.3804 38 1 -0.1536 2.0429 6.1161 39 1 -3.2483 1.4179 4.5100 40 1 -0.1814 5.8183 5.4837 41 1 0.0267 4.6766 6.8349 42 1 1.9098 5.0593 4.4603 43 1 2.2290 5.5120 6.1522 44 1 3.9670 3.6155 4.5073 45 1 4.2468 4.0570 6.2085 46 1 4.1273 2.3432 5.7418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968655558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:37 Heat of formation + Delta-G solvation = 2.487728 kcal Electronic energy + Delta-G solvation = -29042.591669 eV Core-core repulsion = 25186.498924 eV Total energy + Delta-G solvation = -3856.092745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.53308 -40.73834 -38.84580 -37.35709 -35.96626 -35.17117 -34.15545 -32.82250 -31.41564 -30.25059 -29.79017 -28.82031 -25.88412 -24.78281 -24.23162 -23.25364 -22.69682 -21.72832 -20.68367 -20.22826 -18.99175 -18.60609 -17.12212 -16.90533 -16.64522 -16.32526 -15.68632 -15.66480 -15.57076 -15.20659 -15.07890 -14.89936 -14.76211 -14.46217 -14.10557 -14.09270 -13.82898 -13.63860 -13.50504 -13.12935 -13.03744 -12.99819 -12.72015 -12.63792 -12.49677 -12.36232 -12.25292 -12.20991 -11.93164 -11.80578 -11.54910 -11.28972 -11.04277 -10.91502 -10.55748 -9.97922 -9.71189 -9.20565 -8.57190 -7.84444 -5.34728 0.42598 1.14345 1.38030 1.39834 1.47419 1.47801 1.79657 2.39028 2.46809 2.55372 3.31417 3.70086 3.73459 3.80403 3.93617 3.96348 4.01280 4.04640 4.15110 4.20472 4.32361 4.48968 4.54673 4.66693 4.69602 4.73149 4.79746 4.82459 4.91431 4.97196 4.98291 5.11695 5.14548 5.19107 5.26624 5.28446 5.43348 5.48884 5.54171 5.61796 5.72690 5.75611 5.79710 6.10101 6.42935 6.67222 7.17167 7.32433 7.88958 8.40268 9.19231 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008871 B = 0.005039 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.687292 B = 5555.859068 C = 6654.834592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.404 5.404 4 C 0.044 3.956 5 C -0.138 4.138 6 Cl -0.044 7.044 7 C -0.128 4.128 8 C -0.055 4.055 9 C 0.579 3.421 10 O -0.583 6.583 11 N -0.677 5.677 12 C 0.140 3.860 13 H 0.066 0.934 14 C 0.173 3.827 15 N -0.600 5.600 16 C -0.247 4.247 17 H 0.065 0.935 18 C -0.047 4.047 19 N -0.932 5.932 20 Si 0.952 3.048 21 H -0.295 1.295 22 H -0.295 1.295 23 H -0.264 1.264 24 C 0.136 3.864 25 C -0.117 4.117 26 C -0.087 4.087 27 H 0.078 0.922 28 C -0.135 4.135 29 H 0.092 0.908 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.212 0.788 35 H 0.160 0.840 36 H 0.405 0.595 37 H 0.051 0.949 38 H -0.004 1.004 39 H 0.244 0.756 40 H 0.055 0.945 41 H 0.014 0.986 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.625 1.397 -9.475 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.077 5.077 4 C -0.093 4.093 5 C -0.170 4.170 6 Cl -0.016 7.016 7 C -0.154 4.154 8 C -0.169 4.169 9 C 0.367 3.633 10 O -0.466 6.466 11 N -0.327 5.327 12 C 0.034 3.966 13 H 0.084 0.916 14 C 0.046 3.954 15 N -0.323 5.323 16 C -0.377 4.377 17 H 0.082 0.918 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.782 3.218 21 H -0.223 1.223 22 H -0.222 1.222 23 H -0.188 1.188 24 C 0.011 3.989 25 C -0.155 4.155 26 C -0.106 4.106 27 H 0.096 0.904 28 C -0.192 4.192 29 H 0.111 0.889 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.153 0.847 33 H 0.107 0.893 34 H 0.229 0.771 35 H 0.178 0.822 36 H 0.242 0.758 37 H 0.070 0.930 38 H 0.014 0.986 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.182 0.241 -9.295 17.803 hybrid contribution -1.346 0.267 -0.479 1.453 sum 13.836 0.508 -9.774 16.947 Atomic orbital electron populations 1.22026 0.94871 1.03670 1.01200 1.22168 0.95158 0.78330 1.06091 1.44216 1.45598 1.12344 1.05563 1.22260 1.02348 0.91369 0.93309 1.19942 1.13179 0.92245 0.91665 1.98310 1.85958 1.51297 1.65994 1.21361 1.03341 0.96372 0.94348 1.20019 1.14948 0.93136 0.88761 1.17200 0.77069 0.84972 0.84085 1.90749 1.50181 1.21932 1.83723 1.45387 1.69494 1.11261 1.06530 1.21526 0.96643 0.98054 0.80395 0.91639 1.20876 0.90607 0.86773 0.97152 1.44112 1.36254 1.03426 1.48523 1.19372 0.98760 1.00795 1.18823 0.91765 1.25766 0.99180 0.98413 1.00840 1.70122 1.34756 1.12187 1.40816 0.85480 0.78842 0.78150 0.79342 1.22306 1.22206 1.18827 1.21148 0.92661 0.91780 0.93348 1.21973 0.95733 0.96069 1.01767 1.21291 0.95936 0.94921 0.98482 0.90364 1.21761 0.93258 1.02015 1.02196 0.88919 0.96042 0.91479 0.84651 0.89349 0.77105 0.82198 0.75763 0.93035 0.98561 0.94639 0.92652 0.96799 0.92155 0.89046 0.92591 0.90535 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 10.16 71.98 0.73 -3.78 16 2 C 0.10 2.47 6.11 86.38 0.53 3.00 16 3 N -0.40 -11.02 2.77 -510.87 -1.41 -12.43 16 4 C 0.04 0.98 11.34 83.48 0.95 1.92 16 5 C -0.14 -3.38 6.66 22.04 0.15 -3.23 16 6 Cl -0.04 -0.94 29.30 -2.72 -0.08 -1.02 16 7 C -0.13 -3.55 10.34 22.59 0.23 -3.32 16 8 C -0.05 -1.78 6.88 40.35 0.28 -1.51 16 9 C 0.58 22.36 7.74 86.45 0.67 23.03 16 10 O -0.58 -26.20 13.92 -4.32 -0.06 -26.26 16 11 N -0.68 -24.13 4.23 -446.12 -1.89 -26.01 16 12 C 0.14 5.30 2.20 45.07 0.10 5.40 16 13 H 0.07 2.60 7.65 -2.39 -0.02 2.58 16 14 C 0.17 8.55 4.85 86.36 0.42 8.97 16 15 N -0.60 -29.27 2.90 -699.11 -2.03 -31.30 16 16 C -0.25 -13.52 9.58 84.03 0.81 -12.71 16 17 H 0.06 3.43 7.85 -2.91 -0.02 3.41 16 18 C -0.05 -2.68 5.05 84.86 0.43 -2.25 16 19 N -0.93 -57.36 11.05 21.65 0.24 -57.12 16 20 Si 0.95 46.85 29.57 68.60 2.03 48.88 16 21 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 22 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 23 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.14 5.23 6.52 86.36 0.56 5.80 16 25 C -0.12 -3.32 5.20 30.69 0.16 -3.16 16 26 C -0.09 -2.53 2.48 -10.74 -0.03 -2.55 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 C -0.14 -2.99 9.05 71.98 0.65 -2.34 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.14 1.96 8.11 -2.39 -0.02 1.94 16 33 H 0.09 2.52 6.74 -2.39 -0.02 2.51 16 34 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.16 3.90 7.49 -2.91 -0.02 3.88 16 36 H 0.41 12.83 5.58 -92.71 -0.52 12.31 16 37 H 0.05 3.06 6.08 -2.39 -0.01 3.05 16 38 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.24 14.82 8.31 -92.72 -0.77 14.05 16 40 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.06 1.68 6.40 -2.39 -0.02 1.66 16 43 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 1.21 7.54 -2.39 -0.02 1.19 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -72.07 379.67 3.90 -68.17 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.47 Total: 23.83 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 6.63 Total: 13.27 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -5.09 Total: -126.86 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -72.07 3.90 -68.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968655558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.653 kcal (2) G-P(sol) polarization free energy of solvation -72.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds