Wall clock time and date at job start Tue Mar 31 2020 23:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46748 * 2 1 4 4 N 1.46505 * 109.47080 * 240.01078 * 2 1 3 5 5 C 1.34770 * 120.00644 * 84.99335 * 4 2 1 6 6 O 1.21705 * 119.99460 * 4.69793 * 5 4 2 7 7 C 1.46665 * 120.00371 * 184.70032 * 5 4 2 8 8 C 1.37891 * 126.22078 * 354.64562 * 7 5 4 9 9 C 1.39895 * 107.09419 * 179.90867 * 8 7 5 10 10 Cl 1.73593 * 126.07499 * 180.13972 * 9 8 7 11 11 C 1.35515 * 107.85091 * 0.36010 * 9 8 7 12 12 N 1.35630 * 108.85270 * 359.77959 * 11 9 8 13 13 C 1.46503 * 125.67610 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47539 * 120.00553 * 2 1 3 15 15 H 1.09002 * 109.52466 * 179.91773 * 14 2 1 16 16 C 1.53041 * 109.49473 * 300.00249 * 14 2 1 17 17 C 1.53045 * 109.53611 * 181.31605 * 16 14 2 18 18 C 1.53193 * 109.33555 * 298.61831 * 17 16 14 19 19 N 1.46991 * 108.74190 * 54.62460 * 18 17 16 20 20 C 1.36941 * 120.61685 * 126.38441 * 19 18 17 21 21 H 1.07998 * 119.99956 * 211.53917 * 20 19 18 22 22 C 1.38807 * 120.00000 * 31.54506 * 20 19 18 23 23 N 1.31622 * 119.99961 * 10.53724 * 22 20 19 24 24 Si 1.86792 * 120.00107 * 190.53683 * 22 20 19 25 25 H 1.48499 * 109.47407 * 59.99732 * 24 22 20 26 26 H 1.48507 * 109.47476 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47325 * 299.99911 * 24 22 20 28 28 C 1.46933 * 118.75430 * 306.40531 * 19 18 17 29 29 H 1.09007 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47168 * 299.99177 * 1 2 3 31 31 H 1.08994 * 109.47310 * 59.99802 * 1 2 3 32 32 H 0.97008 * 119.99439 * 264.99836 * 4 2 1 33 33 H 1.07994 * 126.45354 * 0.04545 * 8 7 5 34 34 H 1.07996 * 125.57571 * 179.75872 * 11 9 8 35 35 H 1.08994 * 109.46833 * 273.72217 * 13 12 11 36 36 H 1.08995 * 109.47292 * 33.72759 * 13 12 11 37 37 H 1.09002 * 109.47009 * 153.72800 * 13 12 11 38 38 H 1.09000 * 109.46287 * 61.29590 * 16 14 2 39 39 H 1.08998 * 109.44993 * 301.32533 * 16 14 2 40 40 H 1.08998 * 109.49526 * 58.58199 * 17 16 14 41 41 H 1.08994 * 109.49820 * 178.64934 * 17 16 14 42 42 H 1.09004 * 109.58112 * 174.43604 * 18 17 16 43 43 H 1.08998 * 109.58993 * 294.86004 * 18 17 16 44 44 H 0.97003 * 119.99864 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.58539 * 293.82577 * 28 19 18 46 46 H 1.08997 * 109.58496 * 173.39516 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.9397 1.1807 -2.3922 7 6 2.5367 -0.7308 -3.5783 8 6 2.9011 -2.0578 -3.6661 9 6 3.1893 -2.3171 -5.0102 10 17 3.6956 -3.8401 -5.6717 11 6 3.0078 -1.1669 -5.7034 12 7 2.6112 -0.1953 -4.8441 13 6 2.3122 1.1931 -5.2034 14 6 2.0401 -0.7213 1.2491 15 1 3.1301 -0.7231 1.2492 16 6 1.5303 -0.0005 2.4991 17 6 2.0669 -0.7019 3.7491 18 6 1.5536 -2.1450 3.7807 19 7 1.9151 -2.8026 2.5168 20 6 2.6017 -3.9875 2.5186 21 1 3.2870 -4.2157 1.7157 22 6 2.4167 -4.8952 3.5523 23 7 1.4391 -4.7190 4.4158 24 14 3.5551 -6.3669 3.7179 25 1 4.9512 -5.8948 3.9006 26 1 3.1491 -7.1770 4.8945 27 1 3.4706 -7.1987 2.4906 28 6 1.5265 -2.1646 1.2516 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2491 -1.6316 -1.1529 33 1 2.9520 -2.7645 -2.8510 34 1 3.1552 -1.0438 -6.7661 35 1 3.2320 1.7777 -5.1909 36 1 1.8754 1.2242 -6.2015 37 1 1.6067 1.6105 -4.4849 38 1 0.4405 -0.0207 2.5110 39 1 1.8742 1.0338 2.4873 40 1 3.1566 -0.7038 3.7256 41 1 1.7231 -0.1739 4.6384 42 1 2.0114 -2.6774 4.6145 43 1 0.4697 -2.1449 3.8954 44 1 1.3101 -5.3531 5.1384 45 1 0.4403 -2.1661 1.1602 46 1 1.9663 -2.7104 0.4169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025479539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:12 Heat of formation + Delta-G solvation = 19.426495 kcal Electronic energy + Delta-G solvation = -27682.109146 eV Core-core repulsion = 23826.750921 eV Total energy + Delta-G solvation = -3855.358225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68790 -39.57573 -37.90810 -36.54316 -35.24595 -33.39482 -32.73486 -31.26667 -30.44770 -29.28678 -28.04997 -26.72856 -25.29890 -24.34500 -22.72824 -22.04109 -21.00068 -20.27943 -19.79556 -18.68499 -18.02836 -16.72023 -16.18463 -15.97407 -15.66100 -14.88165 -14.79195 -14.48714 -14.30578 -14.11253 -13.90586 -13.61222 -13.47296 -13.17095 -13.10584 -13.03515 -12.61454 -12.46885 -12.35988 -12.24665 -11.82807 -11.64032 -11.60894 -11.02242 -10.96643 -10.91706 -10.58275 -10.51017 -10.18825 -10.16760 -9.97390 -9.87772 -9.60890 -9.40768 -9.04461 -8.89288 -8.47494 -8.44003 -6.61077 -5.78732 -3.27250 1.21238 1.92311 2.23434 2.59177 3.23794 3.36574 3.38043 3.43502 3.44396 4.47079 4.52225 4.61189 4.65118 4.93236 5.02222 5.03449 5.20975 5.27470 5.39821 5.40368 5.41830 5.56378 5.66280 5.69546 5.73657 5.83990 5.99857 6.08192 6.20584 6.22317 6.23826 6.33076 6.47392 6.51890 6.57914 6.61619 6.71166 6.76598 6.78012 6.87262 6.97924 7.41849 7.52798 7.70381 7.78193 8.15259 8.47129 9.21770 9.83181 10.41355 11.28987 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010421 B = 0.003333 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.337879 B = 8398.236521 C =10778.432682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 H 0.084 0.916 4 N -0.705 5.705 5 C 0.590 3.410 6 O -0.554 6.554 7 C -0.034 4.034 8 C -0.127 4.127 9 C -0.121 4.121 10 Cl -0.049 7.049 11 C 0.028 3.972 12 N -0.404 5.404 13 C 0.066 3.934 14 C -0.114 4.114 15 H 0.073 0.927 16 C -0.100 4.100 17 C -0.143 4.143 18 C 0.171 3.829 19 N -0.590 5.590 20 C -0.255 4.255 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.904 5.904 24 Si 0.903 3.097 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.151 3.849 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.406 0.594 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.017 0.983 44 H 0.254 0.746 45 H 0.025 0.975 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 10.508 -17.818 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.102 0.898 4 N -0.355 5.355 5 C 0.377 3.623 6 O -0.434 6.434 7 C -0.148 4.148 8 C -0.153 4.153 9 C -0.154 4.154 10 Cl -0.021 7.021 11 C -0.109 4.109 12 N -0.077 5.077 13 C -0.074 4.074 14 C -0.134 4.134 15 H 0.091 0.909 16 C -0.138 4.138 17 C -0.183 4.183 18 C 0.045 3.955 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.081 0.919 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.025 3.975 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.243 0.757 33 H 0.174 0.826 34 H 0.194 0.806 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.620 11.480 -17.788 21.180 hybrid contribution 0.786 -1.452 -0.028 1.651 sum 1.406 10.029 -17.815 20.492 Atomic orbital electron populations 1.22270 0.95258 1.02880 1.01897 1.21080 0.94158 0.96839 0.83182 0.89770 1.45907 1.66024 1.14646 1.08967 1.16854 0.77013 0.86094 0.82318 1.90760 1.52658 1.14113 1.85876 1.20109 1.14988 0.93366 0.86332 1.21324 1.03781 0.94053 0.96168 1.19905 1.13358 0.88257 0.93830 1.98333 1.89979 1.28322 1.85446 1.21687 1.05778 0.87001 0.96427 1.43764 1.48274 1.09806 1.05855 1.22356 1.03711 0.78345 1.03017 1.21970 1.00854 0.98257 0.92366 0.90899 1.21431 1.00309 0.97424 0.94656 1.22199 1.00502 0.99883 0.95673 1.20810 0.96587 0.87828 0.90256 1.43978 1.65346 1.22580 0.99373 1.19112 1.17014 0.93423 1.08966 0.91935 1.25147 0.97062 0.97497 0.99551 1.69970 1.30153 1.37256 1.17417 0.86364 0.80484 0.82554 0.77282 1.20985 1.21622 1.20795 1.20980 0.96525 0.89851 0.90169 0.91490 0.91161 0.93031 0.75749 0.82611 0.80576 0.90256 0.89824 0.87328 0.92155 0.93564 0.92848 0.93271 0.89507 0.96463 0.93555 0.95711 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 8.79 37.16 0.33 -1.88 16 2 C 0.15 2.13 2.44 -67.93 -0.17 1.96 16 3 H 0.08 1.24 7.51 -51.93 -0.39 0.85 16 4 N -0.70 -9.44 4.98 -55.12 -0.27 -9.71 16 5 C 0.59 8.19 7.74 -12.86 -0.10 8.09 16 6 O -0.55 -8.72 14.28 5.18 0.07 -8.64 16 7 C -0.03 -0.42 6.88 -81.98 -0.56 -0.99 16 8 C -0.13 -1.51 10.35 -39.09 -0.40 -1.91 16 9 C -0.12 -1.33 6.66 -39.93 -0.27 -1.60 16 10 Cl -0.05 -0.53 29.30 -51.86 -1.52 -2.04 16 11 C 0.03 0.26 11.36 -16.85 -0.19 0.07 16 12 N -0.40 -4.22 3.16 -120.19 -0.38 -4.60 16 13 C 0.07 0.52 10.64 59.85 0.64 1.15 16 14 C -0.11 -1.83 2.33 -90.50 -0.21 -2.04 16 15 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.10 -1.60 4.78 -26.69 -0.13 -1.73 16 17 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 18 C 0.17 3.96 5.25 -3.67 -0.02 3.94 16 19 N -0.59 -14.16 2.99 -172.26 -0.51 -14.68 16 20 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 21 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 22 C 0.01 0.17 5.05 -17.43 -0.09 0.08 16 23 N -0.90 -25.73 11.06 55.49 0.61 -25.11 16 24 Si 0.90 21.36 29.57 -169.99 -5.03 16.33 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.15 2.92 5.30 -3.70 -0.02 2.90 16 29 H 0.07 0.94 6.32 -51.93 -0.33 0.61 16 30 H 0.07 0.89 6.46 -51.93 -0.34 0.56 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.41 5.16 5.88 -40.82 -0.24 4.92 16 33 H 0.16 1.71 7.45 -52.49 -0.39 1.32 16 34 H 0.18 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 1.05 6.22 -51.93 -0.32 0.72 16 38 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 2.28 6.12 -51.93 -0.32 1.96 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.03 0.49 6.18 -51.93 -0.32 0.17 16 46 H 0.05 0.87 6.52 -51.93 -0.34 0.53 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -30.63 374.40 -9.56 -40.19 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.67 Total: 4.31 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.50 Total: -1.70 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.56 Total: -54.10 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.64 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.63 -9.56 -40.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025479539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.621 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds