Wall clock time and date at job start Tue Mar 31 2020 23:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.47172 * 2 1 4 4 C 1.35632 * 125.67839 * 265.99292 * 3 2 1 5 5 C 1.35516 * 108.85390 * 180.27226 * 4 3 2 6 6 Cl 1.73602 * 126.07544 * 179.75348 * 5 4 3 7 7 C 1.39884 * 107.85044 * 359.76959 * 5 4 3 8 8 C 1.37638 * 125.67829 * 85.87397 * 3 2 1 9 9 C 1.46674 * 126.21806 * 359.97438 * 8 3 2 10 10 O 1.21692 * 120.00097 * 332.48192 * 9 8 3 11 11 N 1.34781 * 119.99576 * 152.48063 * 9 8 3 12 12 C 1.46920 * 120.63082 * 351.38330 * 11 9 8 13 13 C 1.52759 * 109.00814 * 233.58130 * 12 11 9 14 14 C 1.53040 * 109.38460 * 305.59107 * 13 12 11 15 15 C 1.53039 * 109.53607 * 61.23622 * 14 13 12 16 16 H 1.09001 * 109.52258 * 58.60682 * 15 14 13 17 17 N 1.46500 * 109.49467 * 178.68461 * 15 14 13 18 18 C 1.46502 * 120.00321 * 59.83770 * 17 15 14 19 19 C 1.36940 * 119.99968 * 239.83791 * 17 15 14 20 20 H 1.07999 * 119.99847 * 21.25486 * 19 17 15 21 21 C 1.38812 * 120.00284 * 201.24758 * 19 17 15 22 22 N 1.31622 * 119.99907 * 11.06631 * 21 19 17 23 23 Si 1.86796 * 120.00163 * 191.06655 * 21 19 17 24 24 H 1.48502 * 109.47294 * 60.00494 * 23 21 19 25 25 H 1.48506 * 109.46852 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47116 * 299.99982 * 23 21 19 27 27 C 1.46922 * 120.62724 * 171.65994 * 11 9 8 28 28 H 1.08993 * 109.47129 * 175.36265 * 1 2 3 29 29 H 1.08998 * 109.46801 * 295.36336 * 1 2 3 30 30 H 1.08996 * 109.46602 * 55.35953 * 1 2 3 31 31 H 1.09004 * 109.46832 * 239.99943 * 2 1 3 32 32 H 1.09003 * 109.47029 * 120.00487 * 2 1 3 33 33 H 1.07997 * 125.57153 * 0.04358 * 4 3 2 34 34 H 1.08001 * 126.45286 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.58813 * 353.41912 * 12 11 9 36 36 H 1.09005 * 109.58799 * 113.84133 * 12 11 9 37 37 H 1.09005 * 109.56530 * 185.55110 * 13 12 11 38 38 H 1.09002 * 109.38539 * 65.51878 * 13 12 11 39 39 H 1.09001 * 109.45835 * 301.22047 * 14 13 12 40 40 H 1.08999 * 109.46026 * 181.25873 * 14 13 12 41 41 H 1.08998 * 109.46540 * 93.73195 * 18 17 15 42 42 H 1.08995 * 109.47536 * 213.73218 * 18 17 15 43 43 H 1.08994 * 109.46948 * 333.73973 * 18 17 15 44 44 H 0.96996 * 120.00578 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.58724 * 246.15498 * 27 11 9 46 46 H 1.09000 * 109.59123 * 6.58230 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3547 2.1013 -1.0990 5 6 2.7670 3.3314 -0.7074 6 17 3.3055 4.6096 -1.7514 7 6 2.6819 3.3880 0.6878 8 6 2.2102 2.1648 1.1151 9 6 1.9632 1.7687 2.5056 10 8 1.1262 0.9220 2.7576 11 7 2.6632 2.3426 3.5042 12 6 3.8019 3.2233 3.2102 13 6 5.0265 2.7255 3.9757 14 6 4.6850 2.6144 5.4634 15 6 3.5507 1.6049 5.6541 16 1 3.8550 0.6360 5.2580 17 7 3.2459 1.4759 7.0812 18 6 2.8127 2.6475 7.8466 19 6 3.3658 0.2600 7.6998 20 1 3.9896 -0.5074 7.2659 21 6 2.6856 0.0139 8.8846 22 7 1.7623 0.8549 9.3002 23 14 3.0807 -1.5106 9.8890 24 1 4.5087 -1.4796 10.2951 25 1 2.2226 -1.5411 11.1007 26 1 2.8250 -2.7228 9.0702 27 6 2.3059 2.0945 4.9076 28 1 -0.3633 -1.0242 -0.0831 29 1 -0.3633 0.4402 0.9286 30 1 -0.3632 0.5841 -0.8455 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3057 1.7504 -2.1193 34 1 2.9371 4.2312 1.3125 35 1 4.0098 3.2069 2.1404 36 1 3.5674 4.2407 3.5234 37 1 5.8501 3.4271 3.8428 38 1 5.3177 1.7464 3.5952 39 1 4.3707 3.5887 5.8375 40 1 5.5646 2.2806 6.0139 41 1 1.7236 2.6880 7.8635 42 1 3.1895 2.5747 8.8668 43 1 3.2026 3.5515 7.3789 44 1 1.2867 0.6828 10.1279 45 1 1.9469 3.0179 5.3620 46 1 1.5271 1.3335 4.9573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027683828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:01 Heat of formation + Delta-G solvation = 41.584047 kcal Electronic energy + Delta-G solvation = -28144.258175 eV Core-core repulsion = 24289.860773 eV Total energy + Delta-G solvation = -3854.397401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78528 -39.49655 -37.35901 -36.57543 -35.26488 -34.18378 -32.37937 -31.33791 -30.04424 -29.38988 -28.31446 -26.01213 -25.43359 -23.77421 -23.59557 -22.13600 -21.39518 -20.94374 -19.29861 -18.76514 -17.40631 -16.75856 -16.37515 -15.69978 -15.53052 -14.95803 -14.75177 -14.54365 -14.32134 -14.12816 -13.82529 -13.65923 -13.45561 -13.13564 -13.03491 -12.88077 -12.64942 -12.52862 -12.27792 -12.17956 -11.87292 -11.60012 -11.39397 -11.14665 -11.00189 -10.96247 -10.78188 -10.57840 -10.38594 -10.34549 -10.18954 -9.90016 -9.77492 -9.70152 -8.80960 -8.60499 -8.46940 -8.24667 -6.77546 -5.72005 -3.17261 1.35192 1.92317 2.27031 2.60766 3.22695 3.35222 3.40407 3.44915 3.46034 4.44554 4.48745 4.51265 4.66877 4.83104 4.98332 5.02353 5.04750 5.18872 5.33419 5.34810 5.45605 5.48360 5.54458 5.59275 5.62839 5.69242 5.81054 5.91664 5.99455 6.05021 6.14505 6.22807 6.25817 6.38963 6.49688 6.59574 6.69186 6.78714 6.84701 6.93661 6.97832 7.41795 7.60093 7.72324 7.82122 8.28478 8.40116 9.23987 9.86331 10.34141 11.32846 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.002939 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.539990 B = 9526.032275 C =10569.001257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.102 3.898 3 N -0.401 5.401 4 C 0.026 3.974 5 C -0.122 4.122 6 Cl -0.054 7.054 7 C -0.141 4.141 8 C -0.019 4.019 9 C 0.581 3.419 10 O -0.540 6.540 11 N -0.590 5.590 12 C 0.090 3.910 13 C -0.130 4.130 14 C -0.134 4.134 15 C 0.170 3.830 16 H 0.064 0.936 17 N -0.592 5.592 18 C 0.162 3.838 19 C -0.255 4.255 20 H 0.068 0.932 21 C 0.003 3.997 22 N -0.908 5.908 23 Si 0.907 3.093 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.100 3.900 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.175 0.825 34 H 0.159 0.841 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.026 0.974 42 H 0.048 0.952 43 H -0.002 1.002 44 H 0.253 0.747 45 H 0.064 0.936 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 5.372 -22.018 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.074 5.074 4 C -0.111 4.111 5 C -0.155 4.155 6 Cl -0.026 7.026 7 C -0.167 4.167 8 C -0.134 4.134 9 C 0.368 3.632 10 O -0.418 6.418 11 N -0.323 5.323 12 C -0.033 4.033 13 C -0.169 4.169 14 C -0.174 4.174 15 C 0.060 3.940 16 H 0.082 0.918 17 N -0.314 5.314 18 C 0.018 3.982 19 C -0.385 4.385 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.553 5.553 23 Si 0.737 3.263 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.210 1.210 27 C -0.023 4.023 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.192 0.808 34 H 0.176 0.824 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.016 0.984 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.469 4.629 -21.706 22.331 hybrid contribution 0.171 -0.560 0.453 0.740 sum 2.640 4.068 -21.253 21.799 Atomic orbital electron populations 1.22142 0.93408 1.03098 1.03905 1.22031 0.96577 0.78588 1.04666 1.44062 1.46654 1.11963 1.04720 1.21634 1.05706 0.91521 0.92210 1.19888 1.12877 0.91294 0.91405 1.98319 1.89059 1.49330 1.65860 1.21386 1.04881 0.97360 0.93057 1.20244 1.12152 0.92602 0.88359 1.16959 0.81698 0.81477 0.83033 1.90821 1.34961 1.31901 1.84128 1.47981 1.30401 1.47176 1.06708 1.22216 0.86014 0.93495 1.01564 1.21828 0.96735 1.01564 0.96786 1.22101 1.00336 1.00913 0.94012 1.20612 0.91223 0.96634 0.85498 0.91782 1.43946 1.78785 1.06712 1.01930 1.20806 0.97724 0.84869 0.94796 1.19196 1.22400 0.91738 1.05122 0.91403 1.25011 0.96581 0.98114 0.99863 1.70061 1.24765 1.37217 1.23273 0.86305 0.77596 0.82808 0.79634 1.21097 1.21620 1.20950 1.22617 1.00907 1.01797 0.76964 0.90658 0.90126 0.92420 0.89071 0.88179 0.80800 0.82404 0.88445 0.91342 0.91078 0.91894 0.92173 0.91704 0.95543 0.93327 0.98350 0.93666 0.91757 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.17 37.16 0.38 -1.25 16 2 C 0.10 0.98 6.08 -4.04 -0.02 0.95 16 3 N -0.40 -4.48 2.76 -112.82 -0.31 -4.79 16 4 C 0.03 0.25 11.35 -16.84 -0.19 0.05 16 5 C -0.12 -1.28 6.66 -39.94 -0.27 -1.55 16 6 Cl -0.05 -0.52 29.30 -51.86 -1.52 -2.04 16 7 C -0.14 -1.62 8.43 -39.09 -0.33 -1.95 16 8 C -0.02 -0.25 6.35 -81.98 -0.52 -0.77 16 9 C 0.58 9.41 7.42 -12.85 -0.10 9.31 16 10 O -0.54 -10.34 13.81 5.20 0.07 -10.27 16 11 N -0.59 -9.25 2.98 -174.58 -0.52 -9.77 16 12 C 0.09 1.10 5.06 -3.94 -0.02 1.08 16 13 C -0.13 -1.65 6.06 -26.83 -0.16 -1.82 16 14 C -0.13 -2.19 5.13 -26.69 -0.14 -2.32 16 15 C 0.17 3.42 2.74 -67.81 -0.19 3.23 16 16 H 0.06 1.38 7.85 -51.93 -0.41 0.97 16 17 N -0.59 -14.56 2.82 -173.35 -0.49 -15.05 16 18 C 0.16 3.92 7.91 59.85 0.47 4.39 16 19 C -0.26 -6.98 9.62 -15.06 -0.14 -7.13 16 20 H 0.07 1.82 7.80 -52.49 -0.41 1.42 16 21 C 0.00 0.07 5.14 -17.43 -0.09 -0.02 16 22 N -0.91 -26.38 10.51 55.49 0.58 -25.80 16 23 Si 0.91 21.95 29.57 -169.99 -5.03 16.93 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.10 1.91 5.81 -3.71 -0.02 1.89 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.05 6.87 -51.93 -0.36 0.69 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.59 8.13 -51.93 -0.42 0.16 16 32 H 0.10 1.15 7.36 -51.93 -0.38 0.76 16 33 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.16 1.61 6.34 -52.49 -0.33 1.28 16 35 H 0.10 1.05 4.30 -51.93 -0.22 0.83 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.98 6.71 -51.93 -0.35 0.63 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.03 0.69 7.48 -51.93 -0.39 0.30 16 42 H 0.05 1.27 7.07 -51.93 -0.37 0.91 16 43 H 0.00 -0.04 6.45 -51.93 -0.33 -0.38 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.06 1.23 7.51 -51.93 -0.39 0.84 16 46 H 0.09 2.06 7.00 -51.93 -0.36 1.70 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -31.13 373.09 -9.75 -40.88 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.82 Total: 0.18 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.34 Total: 4.10 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.74 Total: -55.41 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.13 -9.75 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027683828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.465 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds