Wall clock time and date at job start Tue Mar 31 2020 23:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.47172 * 2 1 4 4 C 1.35632 * 125.67839 * 265.99292 * 3 2 1 5 5 C 1.35516 * 108.85390 * 180.27226 * 4 3 2 6 6 Cl 1.73602 * 126.07544 * 179.75348 * 5 4 3 7 7 C 1.39884 * 107.85044 * 359.76959 * 5 4 3 8 8 C 1.37638 * 125.67829 * 85.87397 * 3 2 1 9 9 C 1.46674 * 126.21806 * 359.97438 * 8 3 2 10 10 O 1.21692 * 120.00097 * 332.48192 * 9 8 3 11 11 N 1.34781 * 119.99576 * 152.48063 * 9 8 3 12 12 C 1.46920 * 120.63082 * 351.38330 * 11 9 8 13 13 C 1.52759 * 109.00814 * 233.58130 * 12 11 9 14 14 C 1.53040 * 109.38460 * 305.59107 * 13 12 11 15 15 C 1.53039 * 109.53607 * 61.23622 * 14 13 12 16 16 H 1.09001 * 109.52258 * 58.60682 * 15 14 13 17 17 N 1.46500 * 109.49467 * 178.68461 * 15 14 13 18 18 C 1.46502 * 120.00321 * 59.83770 * 17 15 14 19 19 C 1.36940 * 119.99968 * 239.83791 * 17 15 14 20 20 H 1.07999 * 119.99847 * 21.25486 * 19 17 15 21 21 C 1.38812 * 120.00284 * 201.24758 * 19 17 15 22 22 N 1.31622 * 119.99907 * 11.06631 * 21 19 17 23 23 Si 1.86796 * 120.00163 * 191.06655 * 21 19 17 24 24 H 1.48502 * 109.47294 * 60.00494 * 23 21 19 25 25 H 1.48506 * 109.46852 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47116 * 299.99982 * 23 21 19 27 27 C 1.46922 * 120.62724 * 171.65994 * 11 9 8 28 28 H 1.08993 * 109.47129 * 175.36265 * 1 2 3 29 29 H 1.08998 * 109.46801 * 295.36336 * 1 2 3 30 30 H 1.08996 * 109.46602 * 55.35953 * 1 2 3 31 31 H 1.09004 * 109.46832 * 239.99943 * 2 1 3 32 32 H 1.09003 * 109.47029 * 120.00487 * 2 1 3 33 33 H 1.07997 * 125.57153 * 0.04358 * 4 3 2 34 34 H 1.08001 * 126.45286 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.58813 * 353.41912 * 12 11 9 36 36 H 1.09005 * 109.58799 * 113.84133 * 12 11 9 37 37 H 1.09005 * 109.56530 * 185.55110 * 13 12 11 38 38 H 1.09002 * 109.38539 * 65.51878 * 13 12 11 39 39 H 1.09001 * 109.45835 * 301.22047 * 14 13 12 40 40 H 1.08999 * 109.46026 * 181.25873 * 14 13 12 41 41 H 1.08998 * 109.46540 * 93.73195 * 18 17 15 42 42 H 1.08995 * 109.47536 * 213.73218 * 18 17 15 43 43 H 1.08994 * 109.46948 * 333.73973 * 18 17 15 44 44 H 0.96996 * 120.00578 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.58724 * 246.15498 * 27 11 9 46 46 H 1.09000 * 109.59123 * 6.58230 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3547 2.1013 -1.0990 5 6 2.7670 3.3314 -0.7074 6 17 3.3055 4.6096 -1.7514 7 6 2.6819 3.3880 0.6878 8 6 2.2102 2.1648 1.1151 9 6 1.9632 1.7687 2.5056 10 8 1.1262 0.9220 2.7576 11 7 2.6632 2.3426 3.5042 12 6 3.8019 3.2233 3.2102 13 6 5.0265 2.7255 3.9757 14 6 4.6850 2.6144 5.4634 15 6 3.5507 1.6049 5.6541 16 1 3.8550 0.6360 5.2580 17 7 3.2459 1.4759 7.0812 18 6 2.8127 2.6475 7.8466 19 6 3.3658 0.2600 7.6998 20 1 3.9896 -0.5074 7.2659 21 6 2.6856 0.0139 8.8846 22 7 1.7623 0.8549 9.3002 23 14 3.0807 -1.5106 9.8890 24 1 4.5087 -1.4796 10.2951 25 1 2.2226 -1.5411 11.1007 26 1 2.8250 -2.7228 9.0702 27 6 2.3059 2.0945 4.9076 28 1 -0.3633 -1.0242 -0.0831 29 1 -0.3633 0.4402 0.9286 30 1 -0.3632 0.5841 -0.8455 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3057 1.7504 -2.1193 34 1 2.9371 4.2312 1.3125 35 1 4.0098 3.2069 2.1404 36 1 3.5674 4.2407 3.5234 37 1 5.8501 3.4271 3.8428 38 1 5.3177 1.7464 3.5952 39 1 4.3707 3.5887 5.8375 40 1 5.5646 2.2806 6.0139 41 1 1.7236 2.6880 7.8635 42 1 3.1895 2.5747 8.8668 43 1 3.2026 3.5515 7.3789 44 1 1.2867 0.6828 10.1279 45 1 1.9469 3.0179 5.3620 46 1 1.5271 1.3335 4.9573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027683828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:00 Heat of formation + Delta-G solvation = 24.415851 kcal Electronic energy + Delta-G solvation = -28145.002644 eV Core-core repulsion = 24289.860773 eV Total energy + Delta-G solvation = -3855.141870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.69327 -40.75676 -38.80047 -37.34787 -36.88047 -35.10367 -33.94633 -32.86249 -31.36382 -30.22149 -29.68133 -28.06030 -26.66095 -25.31009 -24.58036 -23.30799 -22.79630 -21.82529 -20.66002 -19.91485 -18.87080 -18.34356 -17.58331 -17.03951 -16.71383 -16.47913 -15.83997 -15.66441 -15.55535 -15.27829 -15.13118 -15.05137 -14.76194 -14.39223 -14.16634 -14.05104 -13.89073 -13.74209 -13.62153 -13.43230 -12.99328 -12.90103 -12.78043 -12.46668 -12.37668 -12.21973 -12.17522 -12.15489 -12.07857 -11.76867 -11.72663 -11.63006 -11.40756 -11.01754 -10.64614 -9.77744 -9.66068 -9.20846 -8.78583 -7.84469 -5.31905 0.38375 1.13408 1.44086 1.45193 1.46178 1.52827 1.62937 2.12428 2.26860 2.50011 3.29041 3.43628 3.60940 3.74868 3.97226 3.98661 4.06536 4.07933 4.14056 4.20191 4.25079 4.31863 4.36480 4.49058 4.62245 4.67205 4.73107 4.77979 4.81498 4.88248 4.92475 4.95265 5.03462 5.14106 5.21356 5.29070 5.38013 5.41444 5.51313 5.55596 5.61086 5.73314 5.74467 6.06736 6.30782 6.38046 7.05011 7.13880 7.85420 8.27229 9.18248 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.002939 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.539990 B = 9526.032275 C =10569.001257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.404 5.404 4 C 0.049 3.951 5 C -0.137 4.137 6 Cl -0.043 7.043 7 C -0.128 4.128 8 C -0.053 4.053 9 C 0.576 3.424 10 O -0.583 6.583 11 N -0.591 5.591 12 C 0.088 3.912 13 C -0.121 4.121 14 C -0.123 4.123 15 C 0.169 3.831 16 H 0.042 0.958 17 N -0.609 5.609 18 C 0.181 3.819 19 C -0.266 4.266 20 H 0.066 0.934 21 C -0.052 4.052 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.280 1.280 27 C 0.118 3.882 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.211 0.789 34 H 0.171 0.829 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.056 0.944 41 H -0.003 1.003 42 H 0.021 0.979 43 H 0.035 0.965 44 H 0.248 0.752 45 H 0.064 0.936 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.950 6.353 -25.156 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.020 4.020 3 N -0.077 5.077 4 C -0.088 4.088 5 C -0.169 4.169 6 Cl -0.015 7.015 7 C -0.154 4.154 8 C -0.166 4.166 9 C 0.366 3.634 10 O -0.464 6.464 11 N -0.323 5.323 12 C -0.033 4.033 13 C -0.160 4.160 14 C -0.162 4.162 15 C 0.061 3.939 16 H 0.061 0.939 17 N -0.331 5.331 18 C 0.036 3.964 19 C -0.396 4.396 20 H 0.084 0.916 21 C -0.247 4.247 22 N -0.584 5.584 23 Si 0.798 3.202 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.206 1.206 27 C -0.007 4.007 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.092 0.908 33 H 0.228 0.772 34 H 0.188 0.812 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.015 0.985 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.338 5.634 -24.884 25.880 hybrid contribution -0.395 -0.842 1.269 1.573 sum 3.943 4.792 -23.615 24.417 Atomic orbital electron populations 1.22073 0.93692 1.03952 1.02209 1.22140 0.96321 0.78179 1.05352 1.44233 1.46503 1.12390 1.04603 1.22257 1.02757 0.90766 0.93026 1.19968 1.13629 0.92120 0.91186 1.98328 1.88956 1.48871 1.65303 1.21558 1.03239 0.96706 0.93906 1.19800 1.15507 0.94076 0.87243 1.17436 0.80891 0.80630 0.84447 1.90797 1.36746 1.33919 1.84974 1.47951 1.31508 1.47799 1.05053 1.22508 0.84307 0.93589 1.02857 1.21808 0.98051 1.02491 0.93613 1.21935 0.97929 0.99393 0.96940 1.20752 0.92920 0.97103 0.83162 0.93935 1.44155 1.79006 1.06060 1.03912 1.20507 0.95846 0.86240 0.93811 1.19511 1.21923 0.92727 1.05456 0.91574 1.25772 0.96779 1.01081 1.01082 1.70234 1.25871 1.38909 1.23420 0.85309 0.77571 0.79495 0.77864 1.20099 1.21868 1.20590 1.22033 0.99002 1.00194 0.79427 0.89109 0.94239 0.90972 0.84935 0.90841 0.77182 0.81206 0.86363 0.89245 0.87261 0.92475 0.91506 0.92480 0.98472 0.96020 0.94688 0.94239 0.91816 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.17 71.98 0.73 -2.32 16 2 C 0.10 1.80 6.08 86.38 0.53 2.32 16 3 N -0.40 -8.25 2.76 -510.86 -1.41 -9.66 16 4 C 0.05 0.76 11.35 83.48 0.95 1.70 16 5 C -0.14 -2.42 6.66 22.04 0.15 -2.27 16 6 Cl -0.04 -0.68 29.30 -2.72 -0.08 -0.76 16 7 C -0.13 -2.61 8.43 22.59 0.19 -2.42 16 8 C -0.05 -1.33 6.35 40.35 0.26 -1.08 16 9 C 0.58 19.15 7.42 86.45 0.64 19.79 16 10 O -0.58 -23.92 13.81 -4.32 -0.06 -23.98 16 11 N -0.59 -18.60 2.98 -824.47 -2.46 -21.05 16 12 C 0.09 1.93 5.06 86.22 0.44 2.37 16 13 C -0.12 -2.74 6.06 30.53 0.19 -2.55 16 14 C -0.12 -3.84 5.13 30.62 0.16 -3.69 16 15 C 0.17 6.96 2.74 45.07 0.12 7.08 16 16 H 0.04 1.91 7.85 -2.39 -0.02 1.89 16 17 N -0.61 -30.96 2.82 -702.36 -1.98 -32.94 16 18 C 0.18 8.97 7.91 127.77 1.01 9.98 16 19 C -0.27 -15.06 9.62 84.03 0.81 -14.25 16 20 H 0.07 3.67 7.80 -2.91 -0.02 3.65 16 21 C -0.05 -2.99 5.14 84.86 0.44 -2.56 16 22 N -0.94 -56.63 10.51 21.65 0.23 -56.40 16 23 Si 0.97 46.27 29.57 68.60 2.03 48.30 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 C 0.12 4.69 5.81 86.36 0.50 5.19 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.08 6.87 -2.39 -0.02 1.06 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.13 1.26 8.13 -2.39 -0.02 1.24 16 32 H 0.07 1.73 7.36 -2.39 -0.02 1.71 16 33 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.17 2.92 6.34 -2.91 -0.02 2.90 16 35 H 0.12 2.18 4.30 -2.39 -0.01 2.17 16 36 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 2.01 6.71 -2.39 -0.02 2.00 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.00 -0.17 7.48 -2.39 -0.02 -0.19 16 42 H 0.02 1.16 7.07 -2.39 -0.02 1.14 16 43 H 0.03 1.44 6.45 -2.39 -0.02 1.43 16 44 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.06 2.51 7.51 -2.39 -0.02 2.49 16 46 H 0.05 2.34 7.00 -2.39 -0.02 2.33 16 Total: -1.00 -72.76 373.09 4.35 -68.41 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.99 Total: 10.77 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 7.10 Total: 17.31 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -5.62 Total: -120.05 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.06 Total: -23.98 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -72.76 4.35 -68.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027683828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.823 kcal (2) G-P(sol) polarization free energy of solvation -72.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds