Wall clock time and date at job start Tue Mar 31 2020 23:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47348 * 2 1 4 4 C 1.35628 * 125.67368 * 266.26197 * 3 2 1 5 5 C 1.35521 * 108.84715 * 180.22961 * 4 3 2 6 6 Cl 1.73604 * 126.06812 * 179.79097 * 5 4 3 7 7 C 1.39877 * 107.85475 * 359.76937 * 5 4 3 8 8 C 1.37632 * 125.67544 * 86.09331 * 3 2 1 9 9 C 1.46675 * 126.22616 * 0.03643 * 8 3 2 10 10 O 1.21689 * 119.99764 * 331.84665 * 9 8 3 11 11 N 1.34769 * 119.99765 * 151.84375 * 9 8 3 12 12 C 1.46931 * 120.63745 * 351.28153 * 11 9 8 13 13 C 1.53186 * 108.77768 * 233.61171 * 12 11 9 14 14 C 1.53042 * 109.30963 * 305.36188 * 13 12 11 15 15 H 1.09000 * 109.46047 * 301.34050 * 14 13 12 16 16 N 1.46505 * 109.45737 * 181.38820 * 14 13 12 17 17 C 1.36933 * 120.00424 * 84.93126 * 16 14 13 18 18 H 1.08008 * 119.99698 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00412 * 179.97438 * 17 16 14 20 20 N 1.31623 * 120.00143 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99915 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46989 * 90.00087 * 21 19 17 23 23 H 1.48496 * 109.47460 * 209.99805 * 21 19 17 24 24 H 1.48501 * 109.46922 * 330.00071 * 21 19 17 25 25 C 1.53033 * 109.53954 * 61.36733 * 14 13 12 26 26 H 1.09002 * 109.50309 * 58.58514 * 25 14 13 27 27 C 1.53000 * 109.49690 * 178.68242 * 25 14 13 28 28 C 1.46936 * 120.62862 * 171.28263 * 11 9 8 29 29 H 1.08998 * 109.46965 * 175.04231 * 1 2 3 30 30 H 1.09000 * 109.47205 * 295.04456 * 1 2 3 31 31 H 1.09003 * 109.46617 * 55.04343 * 1 2 3 32 32 H 1.08995 * 109.47211 * 239.99572 * 2 1 3 33 33 H 1.09003 * 109.46845 * 119.99438 * 2 1 3 34 34 H 1.07999 * 125.57653 * 0.02562 * 4 3 2 35 35 H 1.08001 * 126.45792 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.58680 * 113.81715 * 12 11 9 37 37 H 1.09006 * 109.58118 * 353.39772 * 12 11 9 38 38 H 1.09004 * 109.49818 * 185.41229 * 13 12 11 39 39 H 1.09001 * 109.49994 * 65.31250 * 13 12 11 40 40 H 0.97003 * 119.99642 * 264.92884 * 16 14 13 41 41 H 0.97001 * 119.99727 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.47482 * 60.00217 * 27 25 14 43 43 H 1.09010 * 109.47348 * 180.02562 * 27 25 14 44 44 H 1.09003 * 109.47687 * 299.99663 * 27 25 14 45 45 H 1.08994 * 109.58430 * 6.60126 * 28 11 9 46 46 H 1.08997 * 109.58258 * 246.17928 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3498 2.1030 -1.0994 5 6 2.7630 3.3328 -0.7076 6 17 3.2957 4.6129 -1.7523 7 6 2.6835 3.3875 0.6878 8 6 2.2142 2.1634 1.1154 9 6 1.9735 1.7652 2.5064 10 8 1.1302 0.9258 2.7617 11 7 2.6862 2.3289 3.5016 12 6 3.8327 3.1978 3.2024 13 6 5.0568 2.6783 3.9627 14 6 4.7202 2.5725 5.4519 15 1 4.4216 3.5514 5.8271 16 7 5.8992 2.1074 6.1869 17 6 6.8480 3.0051 6.5980 18 1 6.7274 4.0561 6.3800 19 6 7.9647 2.5645 7.2948 20 7 8.8769 3.4274 7.6895 21 14 8.1729 0.7470 7.6724 22 1 8.9140 0.0929 6.5642 23 1 8.9335 0.5882 8.9379 24 1 6.8367 0.1149 7.8153 25 6 3.5726 1.5793 5.6480 26 1 3.8615 0.6063 5.2506 27 6 3.2588 1.4496 7.1399 28 6 2.3315 2.0863 4.9068 29 1 -0.3633 -1.0238 -0.0888 30 1 -0.3633 0.4350 0.9310 31 1 -0.3633 0.5888 -0.8423 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2966 1.7536 -2.1200 35 1 2.9415 4.2297 1.3128 36 1 3.6112 4.2170 3.5190 37 1 4.0337 3.1813 2.1311 38 1 5.8897 3.3681 3.8261 39 1 5.3318 1.6950 3.5812 40 1 6.0076 1.1635 6.3823 41 1 9.6571 3.1195 8.1767 42 1 2.9685 2.4227 7.5361 43 1 2.4416 0.7418 7.2791 44 1 4.1429 1.0915 7.6674 45 1 1.5422 1.3366 4.9602 46 1 1.9877 3.0149 5.3623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036296439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:06 Heat of formation + Delta-G solvation = 25.416897 kcal Electronic energy + Delta-G solvation = -27995.336387 eV Core-core repulsion = 24140.237926 eV Total energy + Delta-G solvation = -3855.098462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87381 -39.76238 -37.69492 -36.59295 -35.08250 -34.15575 -32.95641 -31.60283 -30.04238 -29.75301 -29.40934 -26.42042 -25.35295 -23.91413 -22.96289 -21.90406 -21.46142 -21.01787 -19.87856 -19.09443 -17.68319 -17.33572 -16.53220 -15.88413 -15.68265 -15.04845 -14.85357 -14.65720 -14.40526 -14.34492 -13.90279 -13.72041 -13.47772 -13.29849 -13.17449 -12.99507 -12.89325 -12.50823 -12.39572 -12.30550 -11.83154 -11.77226 -11.62519 -11.52011 -11.42227 -11.06095 -11.02185 -10.88438 -10.71408 -10.53792 -10.25236 -10.00357 -9.79619 -9.59960 -8.98822 -8.82769 -8.68320 -8.38257 -7.28800 -5.79452 -3.14841 1.24008 1.87833 2.22021 2.50194 3.06411 3.18593 3.34916 3.38193 3.43660 4.32748 4.38639 4.56678 4.60592 4.70816 4.91524 4.95609 4.99559 5.02426 5.16136 5.24832 5.27612 5.35109 5.43521 5.50153 5.54916 5.58323 5.63456 5.69189 5.82379 5.88285 5.93501 6.02305 6.09685 6.17190 6.26132 6.28390 6.38582 6.48320 6.54789 6.66649 6.76271 6.78252 6.93081 7.35645 7.96222 8.04765 8.39700 9.17850 9.90676 10.10554 11.38867 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.003131 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.199913 B = 8940.217600 C =10119.448621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 N -0.402 5.402 4 C 0.028 3.972 5 C -0.121 4.121 6 Cl -0.051 7.051 7 C -0.134 4.134 8 C -0.026 4.026 9 C 0.588 3.412 10 O -0.549 6.549 11 N -0.592 5.592 12 C 0.089 3.911 13 C -0.151 4.151 14 C 0.188 3.812 15 H 0.058 0.942 16 N -0.745 5.745 17 C -0.242 4.242 18 H 0.091 0.909 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.882 3.118 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.113 4.113 26 H 0.068 0.932 27 C -0.137 4.137 28 C 0.124 3.876 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.212 -3.860 -17.924 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.018 4.018 3 N -0.075 5.075 4 C -0.108 4.108 5 C -0.154 4.154 6 Cl -0.022 7.022 7 C -0.160 4.160 8 C -0.140 4.140 9 C 0.376 3.624 10 O -0.428 6.428 11 N -0.323 5.323 12 C -0.033 4.033 13 C -0.192 4.192 14 C 0.078 3.922 15 H 0.076 0.924 16 N -0.387 5.387 17 C -0.372 4.372 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.713 3.287 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.133 4.133 26 H 0.087 0.913 27 C -0.195 4.195 28 C 0.001 3.999 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.193 0.807 35 H 0.177 0.823 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.588 -4.360 -17.751 25.367 hybrid contribution 0.564 -1.086 0.097 1.227 sum -17.025 -5.446 -17.654 25.123 Atomic orbital electron populations 1.22142 0.93474 1.03008 1.03869 1.22007 0.96456 0.78710 1.04642 1.44011 1.46934 1.11877 1.04685 1.21660 1.05516 0.91439 0.92192 1.19913 1.12594 0.91397 0.91483 1.98330 1.89206 1.48986 1.65689 1.21434 1.04065 0.97357 0.93175 1.20075 1.13054 0.92738 0.88126 1.16904 0.81323 0.80940 0.83220 1.90778 1.35237 1.32606 1.84214 1.47847 1.30138 1.48345 1.05957 1.22435 0.85495 0.93420 1.01978 1.22642 0.96471 1.01786 0.98261 1.20189 0.86241 0.95895 0.89849 0.92448 1.42769 1.22678 1.06276 1.66969 1.19053 0.97968 0.91212 1.28920 0.89160 1.24651 0.97005 0.96854 1.00501 1.69698 1.11936 1.32725 1.43760 0.86593 0.77493 0.86878 0.77783 1.21206 1.21798 1.20333 1.21782 0.95282 1.00161 0.96091 0.91340 1.21676 1.01542 1.01505 0.94810 1.21737 0.97791 1.01622 0.78727 0.90735 0.90279 0.92315 0.89014 0.88382 0.80702 0.82260 0.91002 0.88483 0.89894 0.92398 0.80669 0.93071 0.92503 0.93583 0.91359 0.89158 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.18 37.16 0.38 -0.95 16 2 C 0.10 0.85 6.09 -4.04 -0.02 0.83 16 3 N -0.40 -4.13 2.76 -112.82 -0.31 -4.44 16 4 C 0.03 0.26 11.36 -16.84 -0.19 0.07 16 5 C -0.12 -1.27 6.66 -39.94 -0.27 -1.54 16 6 Cl -0.05 -0.50 29.30 -51.86 -1.52 -2.02 16 7 C -0.13 -1.51 8.43 -39.09 -0.33 -1.84 16 8 C -0.03 -0.31 6.33 -81.98 -0.52 -0.83 16 9 C 0.59 8.12 7.40 -12.86 -0.10 8.02 16 10 O -0.55 -8.54 13.85 5.20 0.07 -8.47 16 11 N -0.59 -7.84 2.97 -174.31 -0.52 -8.36 16 12 C 0.09 1.13 5.09 -3.71 -0.02 1.11 16 13 C -0.15 -2.40 5.66 -26.61 -0.15 -2.55 16 14 C 0.19 3.33 2.19 -67.89 -0.15 3.18 16 15 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.75 -16.60 4.21 -53.38 -0.22 -16.82 16 17 C -0.24 -6.50 10.41 -15.06 -0.16 -6.65 16 18 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 21 Si 0.88 21.72 27.73 -169.99 -4.71 17.01 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 25 C -0.11 -1.71 2.46 -90.51 -0.22 -1.93 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 27 C -0.14 -2.03 9.03 37.16 0.34 -1.69 16 28 C 0.12 1.64 5.73 -3.71 -0.02 1.61 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.85 6.89 -51.93 -0.36 0.49 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.51 8.13 -51.93 -0.42 0.08 16 33 H 0.10 0.96 7.36 -51.93 -0.38 0.58 16 34 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.16 1.63 6.40 -52.49 -0.34 1.30 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.14 4.35 -51.93 -0.23 0.92 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.36 8.08 5.37 -40.82 -0.22 7.86 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.07 1.17 7.36 -51.93 -0.38 0.79 16 45 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -31.55 376.69 -9.22 -40.77 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.93 Total: 7.71 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.53 Total: -3.10 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.28 Total: -57.58 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.52 Total: -2.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.55 -9.22 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036296439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.186 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds