Wall clock time and date at job start Tue Mar 31 2020 23:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46854 * 2 1 4 4 C 1.35632 * 125.67729 * 266.26951 * 3 2 1 5 5 C 1.35516 * 108.85035 * 180.29280 * 4 3 2 6 6 Cl 1.73603 * 126.07611 * 179.71095 * 5 4 3 7 7 C 1.39890 * 107.85456 * 359.73679 * 5 4 3 8 8 C 1.37638 * 125.67818 * 86.10826 * 3 2 1 9 9 C 1.46678 * 126.21779 * 359.96638 * 8 3 2 10 10 O 1.21690 * 120.00190 * 331.84694 * 9 8 3 11 11 N 1.34776 * 119.99672 * 151.84818 * 9 8 3 12 12 C 1.46928 * 120.63161 * 351.28474 * 11 9 8 13 13 C 1.53189 * 108.77541 * 233.63034 * 12 11 9 14 14 C 1.53042 * 109.31357 * 305.36374 * 13 12 11 15 15 H 1.08995 * 109.46334 * 181.38553 * 14 13 12 16 16 N 1.46503 * 109.45858 * 301.34433 * 14 13 12 17 17 C 1.36935 * 119.99963 * 274.99885 * 16 14 13 18 18 H 1.07998 * 120.00116 * 359.97438 * 17 16 14 19 19 C 1.38808 * 119.99668 * 179.97438 * 17 16 14 20 20 N 1.31628 * 119.99895 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00437 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46921 * 89.99824 * 21 19 17 23 23 H 1.48503 * 109.47228 * 209.99844 * 21 19 17 24 24 H 1.48498 * 109.46929 * 330.00090 * 21 19 17 25 25 C 1.53041 * 109.53589 * 61.36317 * 14 13 12 26 26 H 1.08999 * 109.49917 * 58.59179 * 25 14 13 27 27 C 1.53009 * 109.49651 * 178.68875 * 25 14 13 28 28 C 1.46923 * 120.63165 * 171.30295 * 11 9 8 29 29 H 1.09003 * 109.46989 * 295.04177 * 1 2 3 30 30 H 1.08998 * 109.47140 * 55.03824 * 1 2 3 31 31 H 1.09002 * 109.47067 * 175.04001 * 1 2 3 32 32 H 1.09002 * 109.47030 * 240.00039 * 2 1 3 33 33 H 1.08997 * 109.47039 * 120.00018 * 2 1 3 34 34 H 1.08000 * 125.57602 * 359.97438 * 4 3 2 35 35 H 1.07997 * 126.45536 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.58903 * 113.84201 * 12 11 9 37 37 H 1.09006 * 109.58482 * 353.41614 * 12 11 9 38 38 H 1.08998 * 109.50209 * 185.40844 * 13 12 11 39 39 H 1.09000 * 109.52448 * 65.32890 * 13 12 11 40 40 H 0.96998 * 119.99985 * 95.00059 * 16 14 13 41 41 H 0.96997 * 120.00438 * 180.02562 * 20 19 17 42 42 H 1.08993 * 109.47385 * 59.99918 * 27 25 14 43 43 H 1.08997 * 109.47028 * 180.02562 * 27 25 14 44 44 H 1.09002 * 109.46666 * 299.99815 * 27 25 14 45 45 H 1.08999 * 109.59083 * 246.15709 * 28 11 9 46 46 H 1.09001 * 109.58272 * 6.44332 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3495 2.1031 -1.0994 5 6 2.7640 3.3324 -0.7075 6 17 3.2988 4.6120 -1.7518 7 6 2.6848 3.3870 0.6880 8 6 2.2143 2.1634 1.1155 9 6 1.9725 1.7654 2.5064 10 8 1.1284 0.9268 2.7614 11 7 2.6853 2.3286 3.5020 12 6 3.8325 3.1965 3.2031 13 6 5.0561 2.6758 3.9636 14 6 4.7192 2.5699 5.4528 15 1 5.5958 2.2230 5.9997 16 7 4.3187 3.8858 5.9573 17 6 5.2705 4.7793 6.3704 18 1 6.3164 4.5139 6.3247 19 6 4.8911 6.0262 6.8479 20 7 5.8059 6.8850 7.2455 21 14 3.0820 6.4851 6.9276 22 1 2.5281 6.0869 8.2466 23 1 2.9353 7.9523 6.7516 24 1 2.3447 5.7808 5.8480 25 6 3.5705 1.5777 5.6483 26 1 3.8587 0.6046 5.2507 27 6 3.2562 1.4479 7.1401 28 6 2.3301 2.0861 4.9068 29 1 -0.3633 0.4350 0.9311 30 1 -0.3633 0.5889 -0.8422 31 1 -0.3633 -1.0238 -0.0889 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2970 1.7536 -2.1199 35 1 2.9430 4.2291 1.3130 36 1 3.6119 4.2159 3.5200 37 1 4.0339 3.1801 2.1319 38 1 5.8896 3.3647 3.8273 39 1 5.3308 1.6924 3.5820 40 1 3.3793 4.1240 5.9987 41 1 5.5408 7.7562 7.5796 42 1 2.9667 2.4211 7.5365 43 1 2.4384 0.7408 7.2789 44 1 4.1399 1.0889 7.6677 45 1 1.9870 3.0148 5.3627 46 1 1.5384 1.3387 4.9597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036296448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:16 Heat of formation + Delta-G solvation = 28.217294 kcal Electronic energy + Delta-G solvation = -28523.604356 eV Core-core repulsion = 24668.627329 eV Total energy + Delta-G solvation = -3854.977027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79966 -39.76119 -37.73307 -36.51702 -34.87484 -33.96631 -32.93735 -31.55129 -29.83322 -29.76412 -29.38148 -26.34295 -25.40873 -23.84303 -23.22728 -21.98120 -21.77548 -20.92741 -19.33271 -18.56670 -17.86957 -17.24743 -16.44093 -15.79376 -15.60925 -15.03271 -14.77021 -14.57663 -14.40570 -14.31917 -13.83734 -13.63802 -13.55882 -13.36395 -13.10638 -12.93894 -12.81335 -12.60505 -12.34691 -12.19170 -11.77180 -11.62913 -11.54340 -11.47596 -11.38376 -11.00758 -10.96537 -10.90627 -10.64323 -10.53040 -10.23007 -9.89619 -9.87069 -9.56771 -8.98897 -8.76071 -8.54213 -8.27103 -7.29335 -5.79668 -3.15105 1.31501 1.95246 2.29584 2.59064 3.15462 3.28206 3.33314 3.36187 3.43490 4.39341 4.45917 4.55608 4.66400 4.74883 4.94946 5.04243 5.05595 5.11152 5.22971 5.33011 5.34756 5.38970 5.51881 5.57281 5.59766 5.61788 5.71705 5.77482 5.87307 5.90082 5.93382 6.04158 6.19195 6.26027 6.29748 6.34899 6.45878 6.55040 6.62104 6.65196 6.72949 6.83654 6.87496 7.49231 7.96627 8.14790 8.39383 9.17436 9.90011 10.09674 11.38763 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.003949 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.154289 B = 7088.423267 C = 8559.775904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 N -0.403 5.403 4 C 0.027 3.973 5 C -0.120 4.120 6 Cl -0.051 7.051 7 C -0.133 4.133 8 C -0.025 4.025 9 C 0.586 3.414 10 O -0.552 6.552 11 N -0.588 5.588 12 C 0.095 3.905 13 C -0.149 4.149 14 C 0.184 3.816 15 H 0.060 0.940 16 N -0.743 5.743 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.933 5.933 21 Si 0.877 3.123 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.111 4.111 26 H 0.071 0.929 27 C -0.138 4.138 28 C 0.120 3.880 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.002 -13.970 -16.533 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.017 4.017 3 N -0.076 5.076 4 C -0.109 4.109 5 C -0.153 4.153 6 Cl -0.022 7.022 7 C -0.159 4.159 8 C -0.139 4.139 9 C 0.375 3.625 10 O -0.432 6.432 11 N -0.319 5.319 12 C -0.027 4.027 13 C -0.190 4.190 14 C 0.074 3.926 15 H 0.078 0.922 16 N -0.387 5.387 17 C -0.371 4.371 18 H 0.108 0.892 19 C -0.188 4.188 20 N -0.581 5.581 21 Si 0.708 3.292 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.131 4.131 26 H 0.090 0.910 27 C -0.196 4.196 28 C -0.002 4.002 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.193 0.807 35 H 0.178 0.822 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.306 -14.549 -16.360 23.416 hybrid contribution -1.106 0.813 -0.110 1.377 sum -9.412 -13.737 -16.470 23.421 Atomic orbital electron populations 1.22145 0.93548 1.02928 1.03926 1.21980 0.96429 0.78774 1.04488 1.43996 1.47137 1.11844 1.04672 1.21633 1.05702 0.91470 0.92134 1.19920 1.12559 0.91380 0.91479 1.98329 1.89121 1.49091 1.65677 1.21505 1.03725 0.97427 0.93228 1.20077 1.13004 0.92739 0.88114 1.16901 0.81386 0.81011 0.83218 1.90764 1.35259 1.32957 1.84264 1.47833 1.30167 1.48127 1.05798 1.22310 0.85053 0.94356 1.00935 1.22498 0.97442 1.00312 0.98703 1.20195 0.94890 0.85713 0.91780 0.92158 1.42834 1.05280 1.13153 1.77431 1.19050 0.89939 0.93650 1.34439 0.89152 1.24627 0.96465 0.96557 1.01156 1.69689 1.31479 1.07862 1.49026 0.86678 0.86899 0.77774 0.77858 1.21086 1.21737 1.20463 1.21752 0.95939 0.99330 0.96062 0.91018 1.21676 1.01086 1.02145 0.94680 1.21694 0.97858 1.01556 0.79068 0.90257 0.92332 0.90791 0.89102 0.88441 0.80739 0.82182 0.90026 0.88953 0.90062 0.93035 0.80628 0.93065 0.91665 0.93518 0.92244 0.91273 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.18 37.16 0.38 -1.05 16 2 C 0.10 0.90 6.09 -4.04 -0.02 0.88 16 3 N -0.40 -4.44 2.76 -112.82 -0.31 -4.75 16 4 C 0.03 0.27 11.36 -16.84 -0.19 0.08 16 5 C -0.12 -1.41 6.66 -39.94 -0.27 -1.68 16 6 Cl -0.05 -0.57 29.30 -51.86 -1.52 -2.09 16 7 C -0.13 -1.73 8.43 -39.09 -0.33 -2.06 16 8 C -0.03 -0.34 6.33 -81.98 -0.52 -0.86 16 9 C 0.59 8.91 7.40 -12.85 -0.10 8.81 16 10 O -0.55 -9.16 13.85 5.20 0.07 -9.09 16 11 N -0.59 -8.95 2.97 -174.31 -0.52 -9.47 16 12 C 0.10 1.45 4.83 -3.71 -0.02 1.43 16 13 C -0.15 -2.36 5.78 -26.61 -0.15 -2.51 16 14 C 0.18 3.22 2.53 -67.89 -0.17 3.05 16 15 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 16 N -0.74 -15.90 3.44 -53.39 -0.18 -16.08 16 17 C -0.24 -6.32 10.41 -15.06 -0.16 -6.47 16 18 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.39 13.97 55.49 0.78 -27.61 16 21 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 25 C -0.11 -1.66 2.67 -90.50 -0.24 -1.90 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 C -0.14 -2.00 9.05 37.16 0.34 -1.66 16 28 C 0.12 1.85 5.43 -3.71 -0.02 1.83 16 29 H 0.08 0.92 6.89 -51.93 -0.36 0.56 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.10 0.97 7.36 -51.93 -0.38 0.59 16 34 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.16 2.10 6.40 -52.49 -0.34 1.76 16 36 H 0.08 1.41 7.74 -51.93 -0.40 1.01 16 37 H 0.09 1.27 4.35 -51.93 -0.23 1.04 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.36 7.73 3.79 -40.82 -0.15 7.58 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.06 1.07 7.54 -51.93 -0.39 0.68 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.15 6.64 -51.93 -0.34 0.80 16 46 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -30.64 372.74 -9.13 -39.76 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.77 Total: 9.03 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.57 Total: -2.00 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.24 Total: -57.91 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.52 Total: -2.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.64 -9.13 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036296448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.980 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds