Wall clock time and date at job start Tue Mar 31 2020 23:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47039 * 2 1 4 4 C 1.35634 * 125.67818 * 265.13307 * 3 2 1 5 5 C 1.35515 * 108.85537 * 180.02562 * 4 3 2 6 6 Cl 1.73600 * 126.07685 * 180.02562 * 5 4 3 7 7 C 1.39895 * 107.85180 * 359.77721 * 5 4 3 8 8 C 1.37635 * 125.67715 * 85.17589 * 3 2 1 9 9 C 1.46670 * 126.22502 * 359.92849 * 8 3 2 10 10 O 1.21696 * 120.00026 * 21.91356 * 9 8 3 11 11 N 1.34773 * 120.00023 * 201.91585 * 9 8 3 12 12 C 1.46925 * 120.63349 * 6.50556 * 11 9 8 13 13 C 1.53198 * 108.77661 * 126.37037 * 12 11 9 14 14 C 1.53035 * 109.31267 * 54.63852 * 13 12 11 15 15 H 1.08998 * 109.46714 * 58.65256 * 14 13 12 16 16 N 1.46493 * 109.45937 * 178.61549 * 14 13 12 17 17 C 1.36942 * 120.00069 * 274.99335 * 16 14 13 18 18 H 1.07997 * 119.99766 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00062 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00246 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47345 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46780 * 120.00120 * 21 19 17 24 24 H 1.48497 * 109.47136 * 239.99966 * 21 19 17 25 25 C 1.53039 * 109.53583 * 298.63252 * 14 13 12 26 26 C 1.46925 * 120.63062 * 186.48317 * 11 9 8 27 27 H 1.09009 * 109.58831 * 113.84094 * 26 11 9 28 28 C 1.53002 * 109.70568 * 353.48715 * 26 11 9 29 29 H 1.08999 * 109.46697 * 64.65844 * 1 2 3 30 30 H 1.08995 * 109.46705 * 184.66025 * 1 2 3 31 31 H 1.08996 * 109.47306 * 304.65734 * 1 2 3 32 32 H 1.08999 * 109.47817 * 239.99840 * 2 1 3 33 33 H 1.09002 * 109.47379 * 119.99826 * 2 1 3 34 34 H 1.07997 * 125.56983 * 0.02562 * 4 3 2 35 35 H 1.07990 * 126.45465 * 180.23110 * 7 5 4 36 36 H 1.09005 * 109.58789 * 6.58173 * 12 11 9 37 37 H 1.08997 * 109.58541 * 246.15881 * 12 11 9 38 38 H 1.09007 * 109.49510 * 174.58542 * 13 12 11 39 39 H 1.08999 * 109.49480 * 294.68259 * 13 12 11 40 40 H 0.97007 * 120.00580 * 94.99658 * 16 14 13 41 41 H 0.96996 * 120.00546 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.49959 * 181.31416 * 25 14 13 43 43 H 1.08998 * 109.50225 * 301.41569 * 25 14 13 44 44 H 1.08999 * 109.46984 * 303.25510 * 28 26 11 45 45 H 1.08998 * 109.47042 * 63.25197 * 28 26 11 46 46 H 1.09000 * 109.47464 * 183.25143 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3701 2.0959 -1.0978 5 6 2.7717 3.3297 -0.7070 6 17 3.3166 4.6057 -1.7504 7 6 2.6636 3.3946 0.6863 8 6 2.1972 2.1693 1.1141 9 6 1.9334 1.7794 2.5031 10 8 1.9070 0.6020 2.8101 11 7 1.7203 2.7248 3.4396 12 6 1.6076 4.1403 3.0623 13 6 0.2976 4.6985 3.6273 14 6 0.2479 4.4443 5.1356 15 1 1.1054 4.9191 5.6124 16 7 -0.9886 5.0061 5.6847 17 6 -1.0422 6.3279 6.0384 18 1 -0.1729 6.9563 5.9122 19 6 -2.2140 6.8604 6.5583 20 7 -3.2734 6.0947 6.7117 21 14 -2.2872 8.6637 7.0401 22 1 -0.9737 9.3019 6.7703 23 1 -3.3407 9.3457 6.2463 24 1 -2.6054 8.7772 8.4861 25 6 0.2858 2.9378 5.4022 26 6 1.5957 2.3596 4.8573 27 1 2.4368 2.7706 5.4159 28 6 1.5818 0.8362 4.9983 29 1 -0.3633 0.4399 -0.9288 30 1 -0.3632 -1.0242 0.0835 31 1 -0.3634 0.5844 0.8453 32 1 1.8935 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3358 1.7398 -2.1168 35 1 2.9028 4.2434 1.3096 36 1 1.6045 4.2298 1.9760 37 1 2.4496 4.6965 3.4744 38 1 0.2470 5.7707 3.4373 39 1 -0.5461 4.2031 3.1468 40 1 -1.7695 4.4418 5.7979 41 1 -4.0922 6.4666 7.0753 42 1 0.2269 2.7566 6.4754 43 1 -0.5578 2.4589 4.9050 44 1 0.7713 0.4231 4.3978 45 1 2.5328 0.4307 4.6531 46 1 1.4313 0.5694 6.0444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044871721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:53 Heat of formation + Delta-G solvation = 44.859602 kcal Electronic energy + Delta-G solvation = -28171.949951 eV Core-core repulsion = 24317.694588 eV Total energy + Delta-G solvation = -3854.255363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88047 -39.93817 -37.37432 -36.55977 -34.84635 -34.14608 -32.90410 -31.93876 -29.62898 -29.54192 -28.91202 -27.06676 -24.58110 -23.86686 -23.13328 -22.84056 -21.37707 -20.55861 -19.94453 -19.04404 -17.29785 -17.06957 -16.24702 -15.90523 -15.67118 -15.08383 -14.85201 -14.77897 -14.35533 -14.08376 -13.80674 -13.73617 -13.35659 -13.25451 -13.16836 -12.95334 -12.89345 -12.56459 -12.39057 -12.17832 -11.86381 -11.63924 -11.55425 -11.46754 -11.27396 -10.95537 -10.92583 -10.80589 -10.77237 -10.39989 -10.21004 -9.84184 -9.71625 -9.15123 -8.94838 -8.76966 -8.55337 -8.31892 -6.98165 -5.78493 -3.07629 1.27194 1.90988 2.25296 2.54819 3.17451 3.24432 3.42035 3.47817 3.49965 4.38847 4.43328 4.56647 4.63685 4.72620 4.96479 5.01476 5.06384 5.14098 5.26932 5.27347 5.37104 5.38628 5.47193 5.53424 5.57212 5.63904 5.72934 5.81377 5.82860 5.91313 5.99419 6.12043 6.20526 6.26384 6.38370 6.43828 6.46133 6.52661 6.61042 6.72799 6.82533 6.90110 7.04737 7.47001 7.68477 8.16462 8.39707 9.51122 10.08555 10.43127 11.44156 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.003196 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.641804 B = 8759.708130 C =10148.666238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.400 5.400 4 C 0.028 3.972 5 C -0.122 4.122 6 Cl -0.052 7.052 7 C -0.143 4.143 8 C -0.026 4.026 9 C 0.588 3.412 10 O -0.544 6.544 11 N -0.585 5.585 12 C 0.077 3.923 13 C -0.149 4.149 14 C 0.178 3.822 15 H 0.048 0.952 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.134 4.134 26 C 0.149 3.851 27 H 0.073 0.927 28 C -0.134 4.134 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.167 -11.888 -15.966 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.028 4.028 3 N -0.073 5.073 4 C -0.109 4.109 5 C -0.155 4.155 6 Cl -0.023 7.023 7 C -0.168 4.168 8 C -0.140 4.140 9 C 0.376 3.624 10 O -0.425 6.425 11 N -0.316 5.316 12 C -0.046 4.046 13 C -0.190 4.190 14 C 0.068 3.932 15 H 0.066 0.934 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.173 4.173 26 C 0.046 3.954 27 H 0.091 0.909 28 C -0.191 4.191 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.192 0.808 35 H 0.184 0.816 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.070 -12.579 -15.771 24.037 hybrid contribution -0.437 1.207 0.053 1.285 sum 12.633 -11.372 -15.717 23.151 Atomic orbital electron populations 1.22105 0.93763 1.03416 1.03042 1.22180 0.96060 0.78920 1.05600 1.44000 1.46709 1.11890 1.04734 1.21669 1.05367 0.91591 0.92275 1.19940 1.12665 0.91231 0.91630 1.98326 1.88829 1.49378 1.65815 1.21659 1.05110 0.96842 0.93236 1.20200 1.13296 0.91925 0.88613 1.16902 0.77090 0.85354 0.83016 1.90827 1.53257 1.17652 1.80740 1.47873 1.69380 1.07493 1.06903 1.22740 0.99569 0.79810 1.02438 1.22662 0.95099 1.01427 0.99825 1.20184 0.91223 0.90761 0.91061 0.93415 1.42436 1.09922 1.09044 1.75018 1.19283 0.96992 0.86337 1.34392 0.91082 1.24741 0.96086 0.97965 1.02103 1.69669 1.02343 1.34705 1.51344 0.86145 0.77334 0.85028 0.77858 1.20514 1.21898 1.21897 1.22300 0.96233 0.97431 1.01363 1.21368 0.98270 0.96557 0.79176 0.90859 1.22200 1.04097 0.92960 0.99852 0.92095 0.90395 0.91563 0.89056 0.86824 0.80783 0.81626 0.87636 0.91206 0.90507 0.92279 0.78297 0.93563 0.90537 0.91800 0.91119 0.91417 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.09 0.78 6.41 -4.04 -0.03 0.76 16 3 N -0.40 -4.20 2.76 -112.83 -0.31 -4.52 16 4 C 0.03 0.26 11.35 -16.84 -0.19 0.07 16 5 C -0.12 -1.31 6.66 -39.93 -0.27 -1.58 16 6 Cl -0.05 -0.53 29.30 -51.86 -1.52 -2.05 16 7 C -0.14 -1.65 8.53 -39.08 -0.33 -1.98 16 8 C -0.03 -0.32 6.53 -81.98 -0.54 -0.86 16 9 C 0.59 8.20 7.49 -12.86 -0.10 8.10 16 10 O -0.54 -8.18 10.37 5.19 0.05 -8.13 16 11 N -0.58 -8.05 2.97 -166.74 -0.50 -8.55 16 12 C 0.08 1.01 5.14 -3.71 -0.02 0.99 16 13 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 14 C 0.18 3.36 2.73 -67.90 -0.19 3.17 16 15 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 16 N -0.72 -17.64 5.12 -53.39 -0.27 -17.91 16 17 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 C -0.13 -2.19 4.84 -26.61 -0.13 -2.32 16 26 C 0.15 2.09 3.49 -67.60 -0.24 1.86 16 27 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 28 C -0.13 -1.82 7.60 37.16 0.28 -1.54 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.11 1.13 6.38 -51.93 -0.33 0.80 16 34 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.17 1.75 5.72 -52.49 -0.30 1.45 16 36 H 0.11 1.28 3.70 -51.93 -0.19 1.09 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.07 1.06 6.77 -51.93 -0.35 0.71 16 45 H 0.07 0.95 6.74 -51.93 -0.35 0.60 16 46 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -30.73 375.46 -9.82 -40.55 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.88 Total: 9.09 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.75 Total: -4.06 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.36 Total: -58.13 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.05 Total: -8.13 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.52 Total: -2.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.73 -9.82 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044871721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.409 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds