Wall clock time and date at job start Tue Mar 31 2020 23:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47039 * 2 1 4 4 C 1.35634 * 125.67818 * 265.13307 * 3 2 1 5 5 C 1.35515 * 108.85537 * 180.02562 * 4 3 2 6 6 Cl 1.73600 * 126.07685 * 180.02562 * 5 4 3 7 7 C 1.39895 * 107.85180 * 359.77721 * 5 4 3 8 8 C 1.37635 * 125.67715 * 85.17589 * 3 2 1 9 9 C 1.46670 * 126.22502 * 359.92849 * 8 3 2 10 10 O 1.21696 * 120.00026 * 21.91356 * 9 8 3 11 11 N 1.34773 * 120.00023 * 201.91585 * 9 8 3 12 12 C 1.46925 * 120.63349 * 6.50556 * 11 9 8 13 13 C 1.53198 * 108.77661 * 126.37037 * 12 11 9 14 14 C 1.53035 * 109.31267 * 54.63852 * 13 12 11 15 15 H 1.08998 * 109.46714 * 58.65256 * 14 13 12 16 16 N 1.46493 * 109.45937 * 178.61549 * 14 13 12 17 17 C 1.36942 * 120.00069 * 274.99335 * 16 14 13 18 18 H 1.07997 * 119.99766 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00062 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00246 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47345 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46780 * 120.00120 * 21 19 17 24 24 H 1.48497 * 109.47136 * 239.99966 * 21 19 17 25 25 C 1.53039 * 109.53583 * 298.63252 * 14 13 12 26 26 C 1.46925 * 120.63062 * 186.48317 * 11 9 8 27 27 H 1.09009 * 109.58831 * 113.84094 * 26 11 9 28 28 C 1.53002 * 109.70568 * 353.48715 * 26 11 9 29 29 H 1.08999 * 109.46697 * 64.65844 * 1 2 3 30 30 H 1.08995 * 109.46705 * 184.66025 * 1 2 3 31 31 H 1.08996 * 109.47306 * 304.65734 * 1 2 3 32 32 H 1.08999 * 109.47817 * 239.99840 * 2 1 3 33 33 H 1.09002 * 109.47379 * 119.99826 * 2 1 3 34 34 H 1.07997 * 125.56983 * 0.02562 * 4 3 2 35 35 H 1.07990 * 126.45465 * 180.23110 * 7 5 4 36 36 H 1.09005 * 109.58789 * 6.58173 * 12 11 9 37 37 H 1.08997 * 109.58541 * 246.15881 * 12 11 9 38 38 H 1.09007 * 109.49510 * 174.58542 * 13 12 11 39 39 H 1.08999 * 109.49480 * 294.68259 * 13 12 11 40 40 H 0.97007 * 120.00580 * 94.99658 * 16 14 13 41 41 H 0.96996 * 120.00546 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.49959 * 181.31416 * 25 14 13 43 43 H 1.08998 * 109.50225 * 301.41569 * 25 14 13 44 44 H 1.08999 * 109.46984 * 303.25510 * 28 26 11 45 45 H 1.08998 * 109.47042 * 63.25197 * 28 26 11 46 46 H 1.09000 * 109.47464 * 183.25143 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3701 2.0959 -1.0978 5 6 2.7717 3.3297 -0.7070 6 17 3.3166 4.6057 -1.7504 7 6 2.6636 3.3946 0.6863 8 6 2.1972 2.1693 1.1141 9 6 1.9334 1.7794 2.5031 10 8 1.9070 0.6020 2.8101 11 7 1.7203 2.7248 3.4396 12 6 1.6076 4.1403 3.0623 13 6 0.2976 4.6985 3.6273 14 6 0.2479 4.4443 5.1356 15 1 1.1054 4.9191 5.6124 16 7 -0.9886 5.0061 5.6847 17 6 -1.0422 6.3279 6.0384 18 1 -0.1729 6.9563 5.9122 19 6 -2.2140 6.8604 6.5583 20 7 -3.2734 6.0947 6.7117 21 14 -2.2872 8.6637 7.0401 22 1 -0.9737 9.3019 6.7703 23 1 -3.3407 9.3457 6.2463 24 1 -2.6054 8.7772 8.4861 25 6 0.2858 2.9378 5.4022 26 6 1.5957 2.3596 4.8573 27 1 2.4368 2.7706 5.4159 28 6 1.5818 0.8362 4.9983 29 1 -0.3633 0.4399 -0.9288 30 1 -0.3632 -1.0242 0.0835 31 1 -0.3634 0.5844 0.8453 32 1 1.8935 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3358 1.7398 -2.1168 35 1 2.9028 4.2434 1.3096 36 1 1.6045 4.2298 1.9760 37 1 2.4496 4.6965 3.4744 38 1 0.2470 5.7707 3.4373 39 1 -0.5461 4.2031 3.1468 40 1 -1.7695 4.4418 5.7979 41 1 -4.0922 6.4666 7.0753 42 1 0.2269 2.7566 6.4754 43 1 -0.5578 2.4589 4.9050 44 1 0.7713 0.4231 4.3978 45 1 2.5328 0.4307 4.6531 46 1 1.4313 0.5694 6.0444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044871721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:52 Heat of formation + Delta-G solvation = 28.068271 kcal Electronic energy + Delta-G solvation = -28172.678077 eV Core-core repulsion = 24317.694588 eV Total energy + Delta-G solvation = -3854.983489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.74697 -41.02712 -38.66187 -37.35212 -36.29302 -35.15651 -34.02578 -33.68272 -31.13883 -30.34329 -30.00732 -28.37842 -26.09843 -25.04947 -24.29134 -23.94656 -22.49086 -21.54309 -21.28693 -20.03391 -19.13679 -18.13845 -17.26029 -17.00351 -16.70694 -16.66657 -15.91618 -15.72131 -15.52833 -15.44162 -15.04616 -14.99976 -14.69173 -14.52929 -14.14598 -14.04292 -13.86791 -13.62329 -13.43779 -13.17051 -13.08143 -13.00247 -12.88719 -12.62254 -12.51126 -12.30782 -12.16842 -12.10581 -12.03559 -11.94876 -11.75513 -11.61641 -11.34790 -10.87928 -10.22806 -9.66274 -9.64404 -9.20669 -8.98666 -7.92406 -5.21074 0.37747 1.13141 1.44865 1.49170 1.49311 1.59304 1.63421 2.20982 2.28078 2.57659 3.40115 3.43757 3.74044 3.77181 3.87077 3.97478 4.05775 4.06338 4.08691 4.20803 4.25089 4.33718 4.37727 4.46892 4.56061 4.63007 4.68374 4.71612 4.78506 4.82022 4.85920 4.94223 5.00717 5.07046 5.12985 5.15977 5.24328 5.40942 5.43883 5.50686 5.55386 5.69392 5.76704 6.07898 6.29283 6.38136 7.09478 7.35411 8.10834 8.33906 9.31523 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.003196 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.641804 B = 8759.708130 C =10148.666238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 N -0.402 5.402 4 C 0.046 3.954 5 C -0.140 4.140 6 Cl -0.048 7.048 7 C -0.143 4.143 8 C -0.055 4.055 9 C 0.585 3.415 10 O -0.560 6.560 11 N -0.589 5.589 12 C 0.088 3.912 13 C -0.138 4.138 14 C 0.173 3.827 15 H 0.051 0.949 16 N -0.738 5.738 17 C -0.233 4.233 18 H 0.080 0.920 19 C -0.077 4.077 20 N -0.972 5.972 21 Si 0.969 3.031 22 H -0.263 1.263 23 H -0.297 1.297 24 H -0.296 1.296 25 C -0.122 4.122 26 C 0.154 3.846 27 H 0.090 0.910 28 C -0.122 4.122 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.031 0.969 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.209 0.791 35 H 0.172 0.828 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.121 -11.934 -17.731 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.028 4.028 3 N -0.074 5.074 4 C -0.091 4.091 5 C -0.173 4.173 6 Cl -0.020 7.020 7 C -0.169 4.169 8 C -0.169 4.169 9 C 0.375 3.625 10 O -0.441 6.441 11 N -0.321 5.321 12 C -0.034 4.034 13 C -0.179 4.179 14 C 0.065 3.935 15 H 0.069 0.931 16 N -0.377 5.377 17 C -0.365 4.365 18 H 0.098 0.902 19 C -0.269 4.269 20 N -0.623 5.623 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.224 1.224 25 C -0.161 4.161 26 C 0.051 3.949 27 H 0.108 0.892 28 C -0.179 4.179 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.146 0.854 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.189 0.811 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.084 -12.634 -17.556 26.369 hybrid contribution -0.997 1.146 0.515 1.604 sum 14.087 -11.489 -17.041 24.916 Atomic orbital electron populations 1.22062 0.93886 1.03839 1.01979 1.22314 0.95864 0.78115 1.06533 1.44210 1.46321 1.12448 1.04469 1.22231 1.02804 0.90856 0.93237 1.20059 1.13682 0.92064 0.91468 1.98328 1.88835 1.49291 1.65502 1.21787 1.04473 0.96643 0.93960 1.20028 1.15478 0.92948 0.88401 1.17128 0.76569 0.85074 0.83685 1.90816 1.53922 1.18225 1.81175 1.47878 1.69693 1.07711 1.06793 1.22709 0.97932 0.79560 1.03187 1.22437 0.96667 1.00775 0.97990 1.20429 0.88990 0.92056 0.92057 0.93068 1.42668 1.11196 1.08326 1.75500 1.19682 0.96915 0.87473 1.32452 0.90217 1.25530 0.96068 1.01968 1.03354 1.69828 1.02820 1.36423 1.53277 0.85123 0.77698 0.80432 0.76845 1.18694 1.22405 1.22353 1.22147 0.97224 0.95621 1.01147 1.21323 0.97181 0.96753 0.79681 0.89204 1.22048 1.03223 0.92408 1.00200 0.91077 0.88878 0.94962 0.85413 0.88583 0.77410 0.81057 0.86253 0.89108 0.91527 0.94205 0.79913 0.94218 0.90879 0.93385 0.92897 0.91576 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.24 71.98 0.74 -1.75 16 2 C 0.09 1.37 6.41 86.38 0.55 1.92 16 3 N -0.40 -7.62 2.76 -510.87 -1.41 -9.04 16 4 C 0.05 0.73 11.35 83.48 0.95 1.68 16 5 C -0.14 -2.70 6.66 22.04 0.15 -2.55 16 6 Cl -0.05 -0.87 29.30 -2.72 -0.08 -0.95 16 7 C -0.14 -3.05 8.53 22.59 0.19 -2.85 16 8 C -0.05 -1.29 6.53 40.36 0.26 -1.03 16 9 C 0.59 15.97 7.49 86.45 0.65 16.62 16 10 O -0.56 -16.74 10.37 -4.34 -0.04 -16.78 16 11 N -0.59 -15.73 2.97 -799.67 -2.38 -18.11 16 12 C 0.09 2.20 5.14 86.36 0.44 2.65 16 13 C -0.14 -4.60 5.66 30.67 0.17 -4.42 16 14 C 0.17 6.53 2.73 45.02 0.12 6.65 16 15 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 16 N -0.74 -36.60 5.12 -322.84 -1.65 -38.25 16 17 C -0.23 -12.65 9.93 84.03 0.83 -11.82 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 20 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 21 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 25 C -0.12 -4.02 4.84 30.67 0.15 -3.88 16 26 C 0.15 4.19 3.49 44.98 0.16 4.34 16 27 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 28 C -0.12 -3.25 7.60 71.98 0.55 -2.70 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.13 0.98 8.12 -2.39 -0.02 0.96 16 33 H 0.10 1.83 6.38 -2.39 -0.02 1.81 16 34 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.17 3.29 5.72 -2.92 -0.02 3.28 16 36 H 0.12 2.73 3.70 -2.38 -0.01 2.72 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.37 20.12 7.80 -92.70 -0.72 19.39 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.60 6.77 -2.39 -0.02 1.59 16 45 H 0.07 1.81 6.74 -2.39 -0.02 1.79 16 46 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -67.34 375.46 3.40 -63.93 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.27 Total: 31.82 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 6.38 Total: -1.07 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -5.16 Total: -124.71 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.04 Total: -16.78 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -67.34 3.40 -63.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044871721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.002 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds