Wall clock time and date at job start Tue Mar 31 2020 23:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47233 * 2 1 4 4 C 1.35628 * 125.67719 * 260.74087 * 3 2 1 5 5 C 1.35514 * 108.85375 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 126.07733 * 179.97438 * 5 4 3 7 7 C 1.39892 * 107.85198 * 0.02562 * 5 4 3 8 8 C 1.37642 * 125.67377 * 80.43892 * 3 2 1 9 9 C 1.46665 * 126.22715 * 359.96200 * 8 3 2 10 10 O 1.21703 * 119.99441 * 5.12054 * 9 8 3 11 11 N 1.34773 * 120.00292 * 185.11989 * 9 8 3 12 12 C 1.46500 * 120.00248 * 185.08563 * 11 9 8 13 13 C 1.52995 * 109.45684 * 60.02751 * 12 11 9 14 14 C 1.53041 * 109.46125 * 300.07114 * 12 11 9 15 15 C 1.53196 * 109.30931 * 301.34593 * 14 12 11 16 16 N 1.46922 * 108.77451 * 305.36148 * 15 14 12 17 17 C 1.36942 * 120.63267 * 233.63350 * 16 15 14 18 18 H 1.08003 * 119.99645 * 31.60910 * 17 16 15 19 19 C 1.38815 * 120.00361 * 211.61170 * 17 16 15 20 20 N 1.31616 * 119.99493 * 10.30002 * 19 17 16 21 21 Si 1.86793 * 120.00057 * 190.30174 * 19 17 16 22 22 H 1.48502 * 109.47310 * 59.99936 * 21 19 17 23 23 H 1.48507 * 109.46874 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47133 * 299.99904 * 21 19 17 25 25 C 1.46918 * 118.73970 * 53.61131 * 16 15 14 26 26 C 1.53036 * 109.46114 * 180.02562 * 12 11 9 27 27 H 1.09011 * 109.46996 * 60.00198 * 1 2 3 28 28 H 1.09003 * 109.47604 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47634 * 300.00641 * 1 2 3 30 30 H 1.09006 * 109.46540 * 119.99856 * 2 1 3 31 31 H 1.08996 * 109.47119 * 239.99414 * 2 1 3 32 32 H 1.07998 * 125.57084 * 0.02562 * 4 3 2 33 33 H 1.07996 * 126.45549 * 180.02562 * 7 5 4 34 34 H 0.96998 * 119.99508 * 5.08767 * 11 9 8 35 35 H 1.08996 * 109.47368 * 60.00187 * 13 12 11 36 36 H 1.09008 * 109.46946 * 179.97438 * 13 12 11 37 37 H 1.09005 * 109.47501 * 299.99929 * 13 12 11 38 38 H 1.09002 * 109.50038 * 61.28855 * 14 12 11 39 39 H 1.08996 * 109.50082 * 181.39151 * 14 12 11 40 40 H 1.09008 * 109.58634 * 185.57570 * 15 14 12 41 41 H 1.08993 * 109.70640 * 65.22369 * 15 14 12 42 42 H 0.96997 * 119.99802 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.59138 * 186.60282 * 25 16 15 44 44 H 1.08996 * 109.70632 * 66.24671 * 25 16 15 45 45 H 1.09001 * 109.50021 * 178.60957 * 26 12 11 46 46 H 1.09000 * 109.49851 * 298.66989 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4492 2.0678 -1.0874 5 6 2.8226 3.3116 -0.7002 6 17 3.4438 4.5606 -1.7336 7 6 2.6197 3.4100 0.6804 8 6 2.1108 2.1998 1.1026 9 6 1.7399 1.8477 2.4772 10 8 1.3915 0.7119 2.7414 11 7 1.7849 2.7818 3.4477 12 6 1.5227 2.4057 4.8391 13 6 2.5459 1.3597 5.2857 14 6 0.1132 1.8205 4.9522 15 6 -0.9062 2.8582 4.4717 16 7 -0.7069 4.1021 5.2276 17 6 -1.7509 4.6912 5.8897 18 1 -2.5407 4.0817 6.3035 19 6 -1.7942 6.0717 6.0289 20 7 -0.9506 6.8274 5.3585 21 14 -3.0497 6.8566 7.1678 22 1 -2.8390 6.3628 8.5524 23 1 -2.8898 8.3328 7.1384 24 1 -4.4186 6.4984 6.7174 25 6 0.6339 4.7018 5.2602 26 6 1.6355 3.6437 5.7318 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 2.4882 1.6858 -2.0968 33 1 2.8183 4.2732 1.2983 34 1 1.9908 3.7031 3.2248 35 1 3.5501 1.7758 5.2048 36 1 2.3513 1.0800 6.3212 37 1 2.4657 0.4781 4.6497 38 1 0.0401 0.9256 4.3342 39 1 -0.0917 1.5633 5.9914 40 1 -1.9160 2.4847 4.6423 41 1 -0.7624 3.0497 3.4084 42 1 -0.9810 7.7920 5.4555 43 1 0.6405 5.5449 5.9511 44 1 0.9074 5.0450 4.2625 45 1 1.4164 3.3693 6.7637 46 1 2.6465 4.0463 5.6693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045641364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:03 Heat of formation + Delta-G solvation = 24.469733 kcal Electronic energy + Delta-G solvation = -28649.641744 eV Core-core repulsion = 24794.502210 eV Total energy + Delta-G solvation = -3855.139534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59691 -39.74739 -37.20497 -36.44025 -34.59072 -34.03541 -32.11938 -30.96954 -29.94010 -29.34865 -28.89047 -27.41611 -24.14987 -23.81202 -22.95198 -22.24162 -21.10496 -20.57868 -19.53414 -18.61006 -17.98197 -16.76874 -15.98596 -15.51148 -15.02799 -14.86032 -14.70188 -14.42587 -14.13327 -13.91713 -13.76445 -13.40651 -13.23149 -13.15910 -13.04122 -12.85329 -12.72544 -12.39626 -12.17442 -11.83429 -11.63540 -11.50563 -11.33689 -11.29071 -11.18441 -10.91198 -10.86913 -10.72684 -10.36791 -10.28621 -9.89660 -9.82958 -9.63976 -9.18156 -8.76487 -8.68196 -8.47133 -8.25143 -6.58541 -5.77876 -3.25087 1.41966 2.04917 2.40088 2.76143 3.38496 3.43822 3.44879 3.49584 3.58391 4.49790 4.53775 4.73282 4.81778 4.89722 5.12108 5.14759 5.29341 5.37888 5.43016 5.47651 5.52336 5.54725 5.61707 5.69739 5.87768 5.98801 6.04616 6.05238 6.19217 6.29279 6.35375 6.37308 6.38571 6.55363 6.65097 6.70881 6.76107 6.84468 6.95057 6.98960 7.08461 7.32192 7.63681 7.78906 7.86640 8.45569 8.49366 9.23948 9.85364 10.44119 11.30299 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.003543 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.878038 B = 7901.776341 C = 8904.480699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.400 5.400 4 C 0.026 3.974 5 C -0.120 4.120 6 Cl -0.054 7.054 7 C -0.131 4.131 8 C -0.026 4.026 9 C 0.590 3.410 10 O -0.547 6.547 11 N -0.694 5.694 12 C 0.187 3.813 13 C -0.159 4.159 14 C -0.143 4.143 15 C 0.151 3.849 16 N -0.590 5.590 17 C -0.252 4.252 18 H 0.062 0.938 19 C 0.005 3.995 20 N -0.906 5.906 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.173 3.827 26 C -0.147 4.147 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.174 0.826 33 H 0.153 0.847 34 H 0.403 0.597 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.014 0.986 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.016 0.984 45 H 0.072 0.928 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.728 -11.368 -11.321 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.020 4.020 3 N -0.074 5.074 4 C -0.111 4.111 5 C -0.153 4.153 6 Cl -0.026 7.026 7 C -0.157 4.157 8 C -0.141 4.141 9 C 0.377 3.623 10 O -0.427 6.427 11 N -0.344 5.344 12 C 0.102 3.898 13 C -0.217 4.217 14 C -0.183 4.183 15 C 0.025 3.975 16 N -0.313 5.313 17 C -0.382 4.382 18 H 0.080 0.920 19 C -0.193 4.193 20 N -0.550 5.550 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.047 3.953 26 C -0.187 4.187 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.191 0.809 33 H 0.171 0.829 34 H 0.239 0.761 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.064 0.936 43 H 0.108 0.892 44 H 0.034 0.966 45 H 0.090 0.910 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.397 -12.248 -11.148 19.042 hybrid contribution -0.455 1.199 0.201 1.298 sum 8.943 -11.050 -10.948 17.942 Atomic orbital electron populations 1.22089 0.93644 1.03149 1.03357 1.22072 0.96312 0.78763 1.04824 1.44003 1.45899 1.11755 1.05703 1.21632 1.05065 0.91932 0.92484 1.19871 1.12176 0.91348 0.91944 1.98319 1.86183 1.51596 1.66480 1.21267 1.03879 0.97005 0.93559 1.20224 1.12804 0.91767 0.89259 1.16781 0.77534 0.85220 0.82747 1.90707 1.48660 1.20471 1.82873 1.45856 1.70045 1.11429 1.07110 1.20307 0.95071 0.95206 0.79224 1.22206 0.98115 0.99860 1.01538 1.22427 0.94329 0.99839 1.01688 1.20825 0.95884 0.87130 0.93677 1.43971 1.05325 1.24846 1.57172 1.19138 1.01984 0.89159 1.27910 0.91998 1.25141 0.98483 0.96556 0.99155 1.69940 1.38786 1.04062 1.42236 0.86356 0.81358 0.78137 0.80779 1.21014 1.21616 1.20935 1.20736 0.82406 0.93350 0.98843 1.22543 1.00350 0.96479 0.99291 0.92420 0.90668 0.90844 0.87423 0.89379 0.80857 0.82950 0.76112 0.93233 0.92069 0.91259 0.90590 0.91949 0.93278 0.96790 0.93578 0.89160 0.96604 0.90951 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.15 37.16 0.38 -1.28 16 2 C 0.10 0.97 6.10 -4.04 -0.02 0.95 16 3 N -0.40 -4.74 2.77 -112.83 -0.31 -5.05 16 4 C 0.03 0.27 11.34 -16.85 -0.19 0.08 16 5 C -0.12 -1.48 6.66 -39.94 -0.27 -1.75 16 6 Cl -0.05 -0.62 29.30 -51.86 -1.52 -2.14 16 7 C -0.13 -1.74 10.34 -39.09 -0.40 -2.15 16 8 C -0.03 -0.37 6.88 -81.98 -0.56 -0.93 16 9 C 0.59 9.15 7.18 -12.86 -0.09 9.06 16 10 O -0.55 -9.07 10.41 5.19 0.05 -9.01 16 11 N -0.69 -10.86 4.08 -48.87 -0.20 -11.06 16 12 C 0.19 3.08 0.66 -131.78 -0.09 2.99 16 13 C -0.16 -2.31 8.40 37.15 0.31 -2.00 16 14 C -0.14 -2.62 4.66 -26.61 -0.12 -2.74 16 15 C 0.15 3.25 6.25 -3.71 -0.02 3.23 16 16 N -0.59 -14.44 2.98 -172.35 -0.51 -14.96 16 17 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 18 H 0.06 1.67 7.85 -52.48 -0.41 1.26 16 19 C 0.01 0.14 5.05 -17.43 -0.09 0.05 16 20 N -0.91 -25.65 11.05 55.49 0.61 -25.04 16 21 Si 0.90 21.53 29.57 -169.99 -5.03 16.50 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 C 0.17 3.87 4.97 -3.74 -0.02 3.85 16 26 C -0.15 -2.61 4.95 -26.64 -0.13 -2.74 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.97 7.50 -51.93 -0.39 0.58 16 30 H 0.11 1.18 6.78 -51.93 -0.35 0.83 16 31 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.15 1.89 7.49 -52.49 -0.39 1.50 16 34 H 0.40 6.15 6.22 -40.82 -0.25 5.89 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 38 H 0.08 1.39 6.03 -51.93 -0.31 1.08 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.07 7.93 -51.92 -0.41 0.66 16 41 H 0.01 0.32 7.74 -51.93 -0.40 -0.08 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.09 2.30 6.11 -51.93 -0.32 1.99 16 44 H 0.02 0.37 6.94 -51.93 -0.36 0.01 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -29.82 373.06 -9.62 -39.45 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.87 Total: 6.06 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.47 Total: -0.36 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.41 Total: -56.11 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.05 Total: -9.01 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.52 Total: -2.14 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.82 -9.62 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045641364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.917 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds