Wall clock time and date at job start Wed Apr 1 2020 00:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.46743 * 2 1 4 4 C 1.35634 * 125.67927 * 263.60142 * 3 2 1 5 5 C 1.35515 * 108.85505 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 126.07114 * 180.02562 * 5 4 3 7 7 C 1.39884 * 107.84992 * 359.97438 * 5 4 3 8 8 C 1.37642 * 125.67770 * 83.86820 * 3 2 1 9 9 C 1.46665 * 126.22172 * 0.04047 * 8 3 2 10 10 O 1.21698 * 120.00071 * 5.43971 * 9 8 3 11 11 N 1.34776 * 119.99692 * 185.43422 * 9 8 3 12 12 C 1.46505 * 119.99762 * 184.98856 * 11 9 8 13 13 H 1.09003 * 109.49922 * 34.93438 * 12 11 9 14 14 C 1.53041 * 109.49935 * 154.99922 * 12 11 9 15 15 C 1.53033 * 109.53914 * 181.31316 * 14 12 11 16 16 C 1.53185 * 109.31796 * 298.63738 * 15 14 12 17 17 H 1.09005 * 109.58979 * 294.70650 * 16 15 14 18 18 C 1.52996 * 109.58954 * 174.42199 * 16 15 14 19 19 N 1.46934 * 108.77389 * 54.63401 * 16 15 14 20 20 C 1.36932 * 120.62825 * 126.41663 * 19 16 15 21 21 H 1.07999 * 120.00516 * 330.06670 * 20 19 16 22 22 C 1.38817 * 119.99812 * 150.07276 * 20 19 16 23 23 N 1.31618 * 120.00135 * 342.19512 * 22 20 19 24 24 Si 1.86797 * 119.99876 * 162.19939 * 22 20 19 25 25 H 1.48509 * 109.47377 * 94.98452 * 24 22 20 26 26 H 1.48506 * 109.47138 * 214.98336 * 24 22 20 27 27 H 1.48500 * 109.47476 * 334.98471 * 24 22 20 28 28 C 1.46921 * 118.73763 * 306.39291 * 19 16 15 29 29 H 1.08997 * 109.47170 * 60.00485 * 1 2 3 30 30 H 1.09005 * 109.46432 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47550 * 299.99909 * 1 2 3 32 32 H 1.09004 * 109.47025 * 239.99992 * 2 1 3 33 33 H 1.08999 * 109.46849 * 119.99937 * 2 1 3 34 34 H 1.08007 * 125.57262 * 359.96602 * 4 3 2 35 35 H 1.08008 * 126.45069 * 180.02562 * 7 5 4 36 36 H 0.96998 * 120.00507 * 4.98815 * 11 9 8 37 37 H 1.09003 * 109.46012 * 301.34323 * 14 12 11 38 38 H 1.09007 * 109.45631 * 61.31099 * 14 12 11 39 39 H 1.09000 * 109.49846 * 58.59291 * 15 14 12 40 40 H 1.09005 * 109.49503 * 178.68199 * 15 14 12 41 41 H 1.08995 * 109.47545 * 60.00380 * 18 16 15 42 42 H 1.09005 * 109.47299 * 180.02562 * 18 16 15 43 43 H 1.09004 * 109.47151 * 300.00010 * 18 16 15 44 44 H 0.96989 * 120.00169 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.58807 * 293.81971 * 28 19 16 46 46 H 1.08999 * 109.58987 * 173.39629 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3977 2.0861 -1.0949 5 6 2.7882 3.3239 -0.7052 6 17 3.3589 4.5906 -1.7460 7 6 2.6487 3.3998 0.6846 8 6 2.1732 2.1779 1.1117 9 6 1.8817 1.7976 2.4979 10 8 1.5554 0.6548 2.7596 11 7 1.9755 2.7138 3.4818 12 6 1.7916 2.3105 4.8782 13 1 2.1940 1.3079 5.0233 14 6 2.5248 3.2927 5.7945 15 6 2.3607 2.8538 7.2513 16 6 0.8739 2.8665 7.6199 17 1 0.4980 3.8892 7.5872 18 6 0.6896 2.2972 9.0280 19 7 0.1400 2.0379 6.6537 20 6 -0.6763 1.0251 7.0814 21 1 -0.4546 0.5047 8.0014 22 6 -1.7890 0.6672 6.3324 23 7 -2.2646 1.4930 5.4246 24 14 -2.6112 -0.9864 6.6131 25 1 -3.7425 -0.8222 7.5611 26 1 -3.1206 -1.5116 5.3208 27 1 -1.6244 -1.9400 7.1805 28 6 0.2983 2.3170 5.2199 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3899 1.7207 -2.1112 35 1 2.8753 4.2532 1.3067 36 1 2.1647 3.6403 3.2656 37 1 3.5839 3.3083 5.5369 38 1 2.1054 4.2907 5.6667 39 1 2.7574 1.8461 7.3745 40 1 2.9027 3.5406 7.9015 41 1 1.2449 2.9059 9.7416 42 1 -0.3689 2.3068 9.2882 43 1 1.0614 1.2730 9.0574 44 1 -3.0421 1.2431 4.9015 45 1 -0.1251 3.2946 4.9890 46 1 -0.2128 1.5489 4.6395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072071919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:53 Heat of formation + Delta-G solvation = 20.134228 kcal Electronic energy + Delta-G solvation = -28138.955222 eV Core-core repulsion = 24283.627686 eV Total energy + Delta-G solvation = -3855.327535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55497 -39.12759 -37.48708 -36.50376 -34.69089 -33.89150 -32.79475 -31.04358 -29.92567 -29.31454 -29.01633 -25.99536 -24.97909 -23.71440 -22.65103 -22.14662 -20.93623 -20.25301 -19.67101 -19.07069 -17.82261 -16.41783 -15.91220 -15.63825 -15.41481 -15.01500 -14.58134 -14.29741 -14.02286 -13.91618 -13.77927 -13.61348 -13.36403 -13.18412 -12.90876 -12.77398 -12.62989 -12.39780 -12.09245 -11.85329 -11.52137 -11.43720 -11.25317 -11.11874 -10.95521 -10.91537 -10.69919 -10.52484 -10.39908 -10.26170 -9.98484 -9.81075 -9.46586 -9.45514 -8.77822 -8.62104 -8.41404 -8.25713 -6.60133 -5.74648 -3.17826 1.45141 2.02744 2.38205 2.76848 3.40327 3.48313 3.50927 3.56027 3.61721 4.53645 4.61340 4.75234 4.86934 4.99115 5.10583 5.24562 5.33804 5.36936 5.45181 5.47895 5.56791 5.64240 5.68025 5.75064 5.87907 5.96229 6.10834 6.17589 6.26804 6.28820 6.36929 6.39877 6.45236 6.48794 6.63349 6.72528 6.73629 6.90433 6.97493 7.05639 7.13582 7.30979 7.71117 7.84671 7.89601 8.49218 8.54533 9.24519 9.89380 10.45469 11.33683 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.003476 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.915938 B = 8052.530950 C = 9648.252754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.398 5.398 4 C 0.025 3.975 5 C -0.122 4.122 6 Cl -0.056 7.056 7 C -0.137 4.137 8 C -0.021 4.021 9 C 0.583 3.417 10 O -0.534 6.534 11 N -0.706 5.706 12 C 0.120 3.880 13 H 0.082 0.918 14 C -0.117 4.117 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.136 4.136 19 N -0.583 5.583 20 C -0.254 4.254 21 H 0.069 0.931 22 C 0.009 3.991 23 N -0.897 5.897 24 Si 0.897 3.103 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.278 1.278 28 C 0.170 3.830 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.174 0.826 35 H 0.151 0.849 36 H 0.395 0.605 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.252 0.748 45 H 0.018 0.982 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.446 3.552 -11.453 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.071 5.071 4 C -0.112 4.112 5 C -0.155 4.155 6 Cl -0.028 7.028 7 C -0.163 4.163 8 C -0.136 4.136 9 C 0.368 3.632 10 O -0.412 6.412 11 N -0.356 5.356 12 C 0.016 3.984 13 H 0.100 0.900 14 C -0.155 4.155 15 C -0.165 4.165 16 C 0.058 3.942 17 H 0.043 0.957 18 C -0.194 4.194 19 N -0.306 5.306 20 C -0.384 4.384 21 H 0.087 0.913 22 C -0.190 4.190 23 N -0.541 5.541 24 Si 0.727 3.273 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.043 3.957 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.192 0.808 35 H 0.169 0.831 36 H 0.229 0.771 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.966 2.403 -11.381 15.986 hybrid contribution -0.367 -0.131 -0.377 0.542 sum 10.599 2.272 -11.758 15.992 Atomic orbital electron populations 1.22088 0.93472 1.03433 1.03287 1.22160 0.96444 0.78605 1.05159 1.44066 1.45965 1.12068 1.04979 1.21644 1.05399 0.91722 0.92386 1.19840 1.12879 0.91188 0.91566 1.98312 1.88045 1.50307 1.66139 1.21167 1.05180 0.96726 0.93249 1.20267 1.12612 0.91876 0.88800 1.16841 0.77846 0.85528 0.82936 1.90843 1.47297 1.19530 1.83489 1.45772 1.71876 1.10960 1.06971 1.22026 1.00968 0.98411 0.77045 0.89950 1.21690 0.98872 0.98903 0.96054 1.22041 0.99294 1.00821 0.94385 1.20492 0.89729 0.93865 0.90106 0.95739 1.21799 1.01809 1.00248 0.95522 1.44018 1.51138 1.35872 0.99579 1.19102 1.02390 1.08393 1.08495 0.91307 1.25055 0.96081 0.98203 0.99709 1.70033 1.23845 1.34024 1.26160 0.86373 0.79280 0.84585 0.77095 1.21557 1.21637 1.20351 1.21032 0.88727 1.00204 0.85728 0.92438 0.90481 0.90796 0.89297 0.87014 0.80850 0.83099 0.77110 0.92934 0.92136 0.92072 0.92614 0.94356 0.92017 0.92798 0.93805 0.96412 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.63 16 2 C 0.10 1.11 6.17 -4.04 -0.02 1.09 16 3 N -0.40 -5.09 2.76 -112.83 -0.31 -5.40 16 4 C 0.03 0.28 11.35 -16.84 -0.19 0.09 16 5 C -0.12 -1.44 6.66 -39.94 -0.27 -1.70 16 6 Cl -0.06 -0.60 29.30 -51.86 -1.52 -2.12 16 7 C -0.14 -1.72 10.34 -39.09 -0.40 -2.13 16 8 C -0.02 -0.30 6.88 -81.98 -0.56 -0.87 16 9 C 0.58 10.12 7.74 -12.86 -0.10 10.03 16 10 O -0.53 -11.11 14.34 5.19 0.07 -11.03 16 11 N -0.71 -11.39 5.05 -55.00 -0.28 -11.67 16 12 C 0.12 2.27 2.57 -67.81 -0.17 2.10 16 13 H 0.08 1.76 7.65 -51.93 -0.40 1.36 16 14 C -0.12 -1.84 5.35 -26.69 -0.14 -1.98 16 15 C -0.13 -2.09 5.37 -26.62 -0.14 -2.23 16 16 C 0.16 3.32 3.50 -67.60 -0.24 3.09 16 17 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.53 7.95 37.16 0.30 -2.24 16 19 N -0.58 -14.30 2.98 -164.78 -0.49 -14.79 16 20 C -0.25 -6.89 8.56 -15.06 -0.13 -7.02 16 21 H 0.07 1.82 6.25 -52.49 -0.33 1.49 16 22 C 0.01 0.25 4.87 -17.43 -0.08 0.16 16 23 N -0.90 -26.33 11.39 55.49 0.63 -25.69 16 24 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.17 4.04 4.87 -3.71 -0.02 4.02 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.18 7.98 -51.93 -0.41 0.77 16 32 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.11 1.52 6.56 -51.93 -0.34 1.18 16 34 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.15 1.58 7.49 -52.48 -0.39 1.19 16 36 H 0.40 5.15 7.55 -40.82 -0.31 4.84 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 43 H 0.05 1.02 7.40 -51.93 -0.38 0.63 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 2.54 6.23 -51.93 -0.32 2.22 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -31.60 381.70 -10.05 -41.65 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.07 Total: 5.43 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.80 Total: 0.77 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.45 Total: -57.55 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.52 Total: -2.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.60 -10.05 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072071919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.785 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds