Wall clock time and date at job start Wed Apr 1 2020 00:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47179 * 2 1 4 4 C 1.35631 * 125.67728 * 262.22042 * 3 2 1 5 5 C 1.35515 * 108.85431 * 180.23911 * 4 3 2 6 6 Cl 1.73605 * 126.07713 * 179.78345 * 5 4 3 7 7 C 1.39893 * 107.84854 * 359.75893 * 5 4 3 8 8 C 1.37638 * 125.67723 * 82.03552 * 3 2 1 9 9 C 1.46666 * 126.21984 * 0.02610 * 8 3 2 10 10 O 1.21689 * 120.00416 * 354.80402 * 9 8 3 11 11 N 1.34778 * 119.99618 * 174.80421 * 9 8 3 12 12 C 1.46506 * 119.99678 * 184.24022 * 11 9 8 13 13 H 1.08997 * 109.52647 * 325.07887 * 12 11 9 14 14 C 1.53042 * 109.49572 * 205.00005 * 12 11 9 15 15 C 1.53041 * 109.54018 * 301.41404 * 14 12 11 16 16 C 1.53192 * 109.31382 * 298.63582 * 15 14 12 17 17 H 1.08996 * 109.58848 * 294.84628 * 16 15 14 18 18 C 1.53002 * 109.58467 * 174.56424 * 16 15 14 19 19 N 1.46931 * 108.88949 * 54.70574 * 16 15 14 20 20 C 1.36936 * 120.62654 * 126.32843 * 19 16 15 21 21 H 1.07996 * 120.00020 * 323.61370 * 20 19 16 22 22 C 1.38812 * 119.99779 * 143.61598 * 20 19 16 23 23 N 1.31621 * 120.00075 * 359.80204 * 22 20 19 24 24 Si 1.86804 * 119.99870 * 179.80133 * 22 20 19 25 25 H 1.48501 * 109.47113 * 60.00244 * 24 22 20 26 26 H 1.48501 * 109.46929 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47188 * 299.99986 * 24 22 20 28 28 C 1.47205 * 118.55384 * 306.45579 * 19 16 15 29 29 H 1.08999 * 109.47144 * 299.99290 * 1 2 3 30 30 H 1.08999 * 109.47378 * 60.00403 * 1 2 3 31 31 H 1.09002 * 109.46925 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46913 * 240.00100 * 2 1 3 33 33 H 1.09003 * 109.47213 * 120.00329 * 2 1 3 34 34 H 1.08001 * 125.57305 * 359.97438 * 4 3 2 35 35 H 1.08000 * 126.45048 * 180.02562 * 7 5 4 36 36 H 0.96996 * 120.00501 * 4.24409 * 11 9 8 37 37 H 1.09003 * 109.46143 * 181.39609 * 14 12 11 38 38 H 1.09005 * 109.46197 * 61.43463 * 14 12 11 39 39 H 1.09000 * 109.49782 * 178.68177 * 15 14 12 40 40 H 1.09003 * 109.49480 * 58.58632 * 15 14 12 41 41 H 1.08992 * 109.47472 * 60.28465 * 18 16 15 42 42 H 1.09004 * 109.46682 * 180.28656 * 18 16 15 43 43 H 1.09004 * 109.47175 * 300.28136 * 18 16 15 44 44 H 0.97000 * 119.99966 * 180.02562 * 23 22 20 45 45 H 1.08994 * 109.56091 * 293.70342 * 28 19 16 46 46 H 1.08998 * 109.64735 * 173.39927 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4226 2.0772 -1.0916 5 6 2.8099 3.3161 -0.7023 6 17 3.4121 4.5718 -1.7389 7 6 2.6378 3.4036 0.6832 8 6 2.1398 2.1896 1.1073 9 6 1.8063 1.8242 2.4880 10 8 1.2892 0.7484 2.7247 11 7 2.0726 2.6799 3.4946 12 6 1.8257 2.2786 4.8818 13 1 0.9430 1.6406 4.9248 14 6 1.5979 3.5244 5.7410 15 6 2.8237 4.4366 5.6552 16 6 4.0480 3.6925 6.1975 17 1 3.9133 3.4933 7.2606 18 6 5.3005 4.5465 5.9905 19 7 4.1924 2.4225 5.4728 20 6 5.3745 2.0981 4.8625 21 1 5.9665 2.8671 4.3887 22 6 5.8119 0.7807 4.8528 23 7 5.0923 -0.1559 5.4336 24 14 7.4218 0.3372 4.0155 25 1 8.5353 1.0801 4.6585 26 1 7.6614 -1.1226 4.1452 27 1 7.3487 0.7014 2.5778 28 6 3.0387 1.5101 5.4154 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 2.4378 1.7037 -2.1048 35 1 2.8538 4.2607 1.3038 36 1 2.4277 3.5615 3.3006 37 1 1.4388 3.2266 6.7775 38 1 0.7205 4.0601 5.3786 39 1 2.6513 5.3345 6.2486 40 1 2.9980 4.7148 4.6158 41 1 5.1893 5.4901 6.5246 42 1 6.1711 4.0132 6.3723 43 1 5.4335 4.7446 4.9268 44 1 5.3981 -1.0764 5.4272 45 1 2.8217 1.1329 6.4147 46 1 3.2639 0.6759 4.7509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072071921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:03 Heat of formation + Delta-G solvation = 21.213945 kcal Electronic energy + Delta-G solvation = -28893.607142 eV Core-core repulsion = 25038.326427 eV Total energy + Delta-G solvation = -3855.280715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38464 -39.12732 -37.36404 -36.34430 -34.41882 -33.73648 -32.68175 -30.98865 -29.90279 -29.20753 -28.82171 -26.15324 -24.95326 -23.64961 -22.64812 -22.10650 -20.79537 -20.32328 -19.44013 -18.69763 -17.83457 -16.35053 -15.80693 -15.37518 -15.30663 -14.89766 -14.53983 -14.20061 -14.00053 -13.92649 -13.73666 -13.51605 -13.19730 -13.01767 -12.77293 -12.69707 -12.56938 -12.44998 -12.06260 -11.87969 -11.35161 -11.21506 -11.19375 -11.12683 -10.88375 -10.86211 -10.78999 -10.72406 -10.40338 -10.31785 -9.93621 -9.58659 -9.49670 -9.42195 -8.59932 -8.45902 -8.39725 -8.06072 -6.46873 -5.73909 -3.26735 1.63910 2.18352 2.56256 2.93441 3.39201 3.44260 3.45391 3.69543 3.91904 4.50353 4.71533 4.88849 5.04358 5.07302 5.26382 5.31591 5.34527 5.38204 5.46098 5.54790 5.58656 5.59958 5.67657 5.85635 6.02499 6.04350 6.11929 6.13756 6.18376 6.35554 6.38936 6.47036 6.52197 6.56631 6.63531 6.71409 6.88282 6.92857 7.09135 7.13975 7.15784 7.40939 7.76641 7.84905 8.08521 8.56334 8.72878 9.27367 9.87708 10.48011 11.33071 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009204 B = 0.004487 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.573195 B = 6239.437050 C = 6420.359201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.399 5.399 4 C 0.022 3.978 5 C -0.120 4.120 6 Cl -0.058 7.058 7 C -0.134 4.134 8 C -0.015 4.015 9 C 0.587 3.413 10 O -0.551 6.551 11 N -0.685 5.685 12 C 0.119 3.881 13 H 0.077 0.923 14 C -0.119 4.119 15 C -0.131 4.131 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.135 4.135 19 N -0.583 5.583 20 C -0.247 4.247 21 H 0.063 0.937 22 C 0.012 3.988 23 N -0.901 5.901 24 Si 0.896 3.104 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.162 3.838 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.173 0.827 35 H 0.150 0.850 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.253 0.747 45 H 0.025 0.975 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.729 6.400 -9.727 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.072 5.072 4 C -0.114 4.114 5 C -0.153 4.153 6 Cl -0.030 7.030 7 C -0.160 4.160 8 C -0.130 4.130 9 C 0.374 3.626 10 O -0.431 6.431 11 N -0.334 5.334 12 C 0.013 3.987 13 H 0.095 0.905 14 C -0.157 4.157 15 C -0.171 4.171 16 C 0.059 3.941 17 H 0.042 0.958 18 C -0.192 4.192 19 N -0.306 5.306 20 C -0.377 4.377 21 H 0.081 0.919 22 C -0.187 4.187 23 N -0.545 5.545 24 Si 0.726 3.274 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.210 1.210 28 C 0.036 3.964 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.190 0.810 35 H 0.167 0.833 36 H 0.232 0.768 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.113 5.156 -9.553 14.174 hybrid contribution 1.254 0.230 -0.718 1.463 sum -7.860 5.387 -10.272 14.011 Atomic orbital electron populations 1.22065 0.93833 1.03050 1.02935 1.22062 0.96098 0.78860 1.05057 1.43984 1.46163 1.11733 1.05334 1.21583 1.05699 0.91767 0.92383 1.19828 1.12372 0.91405 0.91725 1.98304 1.87044 1.51229 1.66428 1.21145 1.04302 0.97328 0.93240 1.20251 1.12126 0.91649 0.88966 1.16737 0.78661 0.84342 0.82890 1.90763 1.44862 1.22772 1.84726 1.45530 1.64463 1.17497 1.05919 1.21870 1.01052 0.96443 0.79312 0.90498 1.21693 0.97551 0.96324 1.00095 1.22079 0.96639 0.97626 1.00734 1.20481 0.92041 0.87530 0.94072 0.95789 1.21782 0.98988 0.97461 1.00995 1.44014 1.09684 1.17005 1.59902 1.18949 0.97613 0.92685 1.28470 0.91893 1.25288 0.97437 0.97216 0.98778 1.69893 1.37708 1.00602 1.46306 0.86485 0.84426 0.77142 0.79388 1.20870 1.21729 1.21016 1.21284 0.83472 0.92898 0.98769 0.90868 0.92690 0.90760 0.89391 0.87327 0.80994 0.83272 0.76765 0.91048 0.93025 0.92845 0.92714 0.94519 0.92067 0.92982 0.93632 0.95688 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 10.12 37.16 0.38 -1.43 16 2 C 0.10 1.25 6.07 -4.04 -0.02 1.23 16 3 N -0.40 -5.77 2.76 -112.83 -0.31 -6.08 16 4 C 0.02 0.29 11.35 -16.85 -0.19 0.09 16 5 C -0.12 -1.68 6.66 -39.93 -0.27 -1.94 16 6 Cl -0.06 -0.73 29.30 -51.86 -1.52 -2.25 16 7 C -0.13 -2.03 10.35 -39.09 -0.40 -2.43 16 8 C -0.02 -0.25 6.88 -81.98 -0.56 -0.82 16 9 C 0.59 11.00 7.74 -12.86 -0.10 10.90 16 10 O -0.55 -11.47 13.57 5.20 0.07 -11.39 16 11 N -0.68 -12.14 4.90 -55.00 -0.27 -12.41 16 12 C 0.12 2.20 2.85 -67.81 -0.19 2.01 16 13 H 0.08 1.46 7.52 -51.93 -0.39 1.07 16 14 C -0.12 -1.83 5.59 -26.69 -0.15 -1.98 16 15 C -0.13 -2.06 5.21 -26.61 -0.14 -2.20 16 16 C 0.17 3.21 3.49 -67.60 -0.24 2.97 16 17 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 18 C -0.13 -2.43 8.01 37.16 0.30 -2.13 16 19 N -0.58 -13.58 2.91 -164.55 -0.48 -14.06 16 20 C -0.25 -6.44 8.40 -15.06 -0.13 -6.57 16 21 H 0.06 1.63 6.42 -52.49 -0.34 1.29 16 22 C 0.01 0.33 5.25 -17.43 -0.09 0.24 16 23 N -0.90 -25.99 10.90 55.49 0.60 -25.38 16 24 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 28 C 0.16 3.77 4.84 -3.56 -0.02 3.75 16 29 H 0.07 1.01 7.22 -51.93 -0.37 0.64 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.84 8.11 -51.92 -0.42 0.41 16 33 H 0.11 1.66 6.92 -51.93 -0.36 1.30 16 34 H 0.17 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.15 2.04 7.45 -52.49 -0.39 1.65 16 36 H 0.40 6.44 5.67 -40.82 -0.23 6.21 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.85 6.40 -51.93 -0.33 0.51 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.22 7.69 -51.93 -0.40 0.82 16 43 H 0.05 0.95 7.39 -51.93 -0.38 0.56 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 2.71 6.19 -51.93 -0.32 2.39 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -30.21 376.50 -9.96 -40.17 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.88 Total: 7.18 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.83 Total: 1.69 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.46 Total: -57.93 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.52 Total: -2.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.21 -9.96 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072071921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.384 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds