Wall clock time and date at job start Wed Apr 1 2020 00:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47179 * 2 1 4 4 C 1.35631 * 125.67728 * 262.22042 * 3 2 1 5 5 C 1.35515 * 108.85431 * 180.23911 * 4 3 2 6 6 Cl 1.73605 * 126.07713 * 179.78345 * 5 4 3 7 7 C 1.39893 * 107.84854 * 359.75893 * 5 4 3 8 8 C 1.37638 * 125.67723 * 82.03552 * 3 2 1 9 9 C 1.46666 * 126.21984 * 0.02610 * 8 3 2 10 10 O 1.21689 * 120.00416 * 354.80402 * 9 8 3 11 11 N 1.34778 * 119.99618 * 174.80421 * 9 8 3 12 12 C 1.46506 * 119.99678 * 184.24022 * 11 9 8 13 13 H 1.08997 * 109.52647 * 325.07887 * 12 11 9 14 14 C 1.53042 * 109.49572 * 205.00005 * 12 11 9 15 15 C 1.53041 * 109.54018 * 301.41404 * 14 12 11 16 16 C 1.53192 * 109.31382 * 298.63582 * 15 14 12 17 17 H 1.08996 * 109.58848 * 294.84628 * 16 15 14 18 18 C 1.53002 * 109.58467 * 174.56424 * 16 15 14 19 19 N 1.46931 * 108.88949 * 54.70574 * 16 15 14 20 20 C 1.36936 * 120.62654 * 126.32843 * 19 16 15 21 21 H 1.07996 * 120.00020 * 323.61370 * 20 19 16 22 22 C 1.38812 * 119.99779 * 143.61598 * 20 19 16 23 23 N 1.31621 * 120.00075 * 359.80204 * 22 20 19 24 24 Si 1.86804 * 119.99870 * 179.80133 * 22 20 19 25 25 H 1.48501 * 109.47113 * 60.00244 * 24 22 20 26 26 H 1.48501 * 109.46929 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47188 * 299.99986 * 24 22 20 28 28 C 1.47205 * 118.55384 * 306.45579 * 19 16 15 29 29 H 1.08999 * 109.47144 * 299.99290 * 1 2 3 30 30 H 1.08999 * 109.47378 * 60.00403 * 1 2 3 31 31 H 1.09002 * 109.46925 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46913 * 240.00100 * 2 1 3 33 33 H 1.09003 * 109.47213 * 120.00329 * 2 1 3 34 34 H 1.08001 * 125.57305 * 359.97438 * 4 3 2 35 35 H 1.08000 * 126.45048 * 180.02562 * 7 5 4 36 36 H 0.96996 * 120.00501 * 4.24409 * 11 9 8 37 37 H 1.09003 * 109.46143 * 181.39609 * 14 12 11 38 38 H 1.09005 * 109.46197 * 61.43463 * 14 12 11 39 39 H 1.09000 * 109.49782 * 178.68177 * 15 14 12 40 40 H 1.09003 * 109.49480 * 58.58632 * 15 14 12 41 41 H 1.08992 * 109.47472 * 60.28465 * 18 16 15 42 42 H 1.09004 * 109.46682 * 180.28656 * 18 16 15 43 43 H 1.09004 * 109.47175 * 300.28136 * 18 16 15 44 44 H 0.97000 * 119.99966 * 180.02562 * 23 22 20 45 45 H 1.08994 * 109.56091 * 293.70342 * 28 19 16 46 46 H 1.08998 * 109.64735 * 173.39927 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4226 2.0772 -1.0916 5 6 2.8099 3.3161 -0.7023 6 17 3.4121 4.5718 -1.7389 7 6 2.6378 3.4036 0.6832 8 6 2.1398 2.1896 1.1073 9 6 1.8063 1.8242 2.4880 10 8 1.2892 0.7484 2.7247 11 7 2.0726 2.6799 3.4946 12 6 1.8257 2.2786 4.8818 13 1 0.9430 1.6406 4.9248 14 6 1.5979 3.5244 5.7410 15 6 2.8237 4.4366 5.6552 16 6 4.0480 3.6925 6.1975 17 1 3.9133 3.4933 7.2606 18 6 5.3005 4.5465 5.9905 19 7 4.1924 2.4225 5.4728 20 6 5.3745 2.0981 4.8625 21 1 5.9665 2.8671 4.3887 22 6 5.8119 0.7807 4.8528 23 7 5.0923 -0.1559 5.4336 24 14 7.4218 0.3372 4.0155 25 1 8.5353 1.0801 4.6585 26 1 7.6614 -1.1226 4.1452 27 1 7.3487 0.7014 2.5778 28 6 3.0387 1.5101 5.4154 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 2.4378 1.7037 -2.1048 35 1 2.8538 4.2607 1.3038 36 1 2.4277 3.5615 3.3006 37 1 1.4388 3.2266 6.7775 38 1 0.7205 4.0601 5.3786 39 1 2.6513 5.3345 6.2486 40 1 2.9980 4.7148 4.6158 41 1 5.1893 5.4901 6.5246 42 1 6.1711 4.0132 6.3723 43 1 5.4335 4.7446 4.9268 44 1 5.3981 -1.0764 5.4272 45 1 2.8217 1.1329 6.4147 46 1 3.2639 0.6759 4.7509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072071921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:02 Heat of formation + Delta-G solvation = 4.216875 kcal Electronic energy + Delta-G solvation = -28894.344191 eV Core-core repulsion = 25038.326427 eV Total energy + Delta-G solvation = -3856.017764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.51903 -40.60147 -38.90984 -37.36011 -35.87318 -34.99586 -34.39982 -32.43432 -31.71948 -30.28141 -30.00230 -27.80571 -26.71246 -24.70791 -24.01650 -23.68850 -22.15705 -21.66821 -20.68861 -20.31536 -19.00804 -18.18443 -17.25114 -16.97880 -16.52236 -16.37045 -15.80896 -15.71679 -15.36725 -15.32584 -15.06331 -14.94723 -14.67949 -14.35328 -14.14136 -13.96002 -13.77182 -13.61066 -13.56848 -12.99547 -12.97162 -12.79089 -12.60167 -12.54162 -12.44296 -12.35832 -12.19025 -12.10551 -12.07147 -11.80622 -11.54581 -11.19555 -11.06971 -10.93451 -10.49656 -9.96857 -9.69673 -9.19948 -8.42441 -7.79722 -5.33925 0.43379 1.14625 1.41983 1.42539 1.47929 1.48044 1.79559 2.36727 2.49757 2.59289 3.36449 3.67124 3.72908 3.81939 3.96690 4.07470 4.09889 4.13527 4.20203 4.22267 4.36383 4.52233 4.53262 4.67883 4.74326 4.77799 4.85067 4.85230 4.95329 5.00725 5.07045 5.12200 5.14388 5.19956 5.29576 5.34935 5.43962 5.60519 5.64506 5.71477 5.75481 5.77390 5.82525 6.10672 6.51519 6.67545 7.23787 7.31986 7.94191 8.48434 9.23864 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009204 B = 0.004487 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.573195 B = 6239.437050 C = 6420.359201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.096 3.904 3 N -0.403 5.403 4 C 0.043 3.957 5 C -0.138 4.138 6 Cl -0.045 7.045 7 C -0.129 4.129 8 C -0.054 4.054 9 C 0.580 3.420 10 O -0.583 6.583 11 N -0.680 5.680 12 C 0.130 3.870 13 H 0.068 0.932 14 C -0.110 4.110 15 C -0.120 4.120 16 C 0.155 3.845 17 H 0.014 0.986 18 C -0.127 4.127 19 N -0.595 5.595 20 C -0.234 4.234 21 H 0.068 0.932 22 C -0.048 4.048 23 N -0.935 5.935 24 Si 0.949 3.051 25 H -0.273 1.273 26 H -0.301 1.301 27 H -0.283 1.283 28 C 0.174 3.826 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.212 0.788 35 H 0.159 0.841 36 H 0.405 0.595 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.049 0.951 44 H 0.243 0.757 45 H -0.003 1.003 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 9.022 -11.676 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 N -0.076 5.076 4 C -0.094 4.094 5 C -0.170 4.170 6 Cl -0.016 7.016 7 C -0.155 4.155 8 C -0.168 4.168 9 C 0.368 3.632 10 O -0.466 6.466 11 N -0.330 5.330 12 C 0.023 3.977 13 H 0.086 0.914 14 C -0.148 4.148 15 C -0.159 4.159 16 C 0.050 3.950 17 H 0.032 0.968 18 C -0.185 4.185 19 N -0.319 5.319 20 C -0.365 4.365 21 H 0.086 0.914 22 C -0.243 4.243 23 N -0.582 5.582 24 Si 0.779 3.221 25 H -0.199 1.199 26 H -0.227 1.227 27 H -0.209 1.209 28 C 0.047 3.953 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.177 0.823 36 H 0.242 0.758 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.015 0.985 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.460 7.839 -11.494 16.824 hybrid contribution 1.363 -0.535 -0.149 1.472 sum -8.097 7.303 -11.643 15.952 Atomic orbital electron populations 1.21984 0.92822 1.03926 1.02171 1.22176 0.96947 0.78171 1.05075 1.44205 1.45997 1.12187 1.05234 1.22234 1.02841 0.91064 0.93278 1.19947 1.13184 0.92397 0.91516 1.98308 1.86892 1.50677 1.65756 1.21352 1.03037 0.96927 0.94200 1.20032 1.15090 0.93111 0.88540 1.17171 0.78018 0.83882 0.84117 1.90738 1.46309 1.24072 1.85435 1.45427 1.64454 1.17745 1.05342 1.21557 0.98010 0.97701 0.80393 0.91417 1.21666 0.98889 0.94702 0.99570 1.21969 0.94282 0.98177 1.01502 1.20765 0.94838 0.86170 0.93270 0.96781 1.21709 0.97042 0.98500 1.01227 1.44203 1.08960 1.18287 1.60435 1.19224 0.97886 0.92408 1.27006 0.91420 1.25944 1.00144 0.97679 1.00491 1.70096 1.39069 1.00256 1.48738 0.85617 0.81790 0.76237 0.78496 1.19877 1.22746 1.20895 1.20920 0.85649 0.92480 0.96285 0.94096 0.90744 0.89123 0.85648 0.90942 0.77181 0.82347 0.75752 0.90701 0.89771 0.89205 0.92081 0.90735 0.94694 0.93171 0.94786 0.98495 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 10.12 71.98 0.73 -2.56 16 2 C 0.10 2.36 6.07 86.38 0.52 2.88 16 3 N -0.40 -11.22 2.76 -510.88 -1.41 -12.64 16 4 C 0.04 0.99 11.35 83.48 0.95 1.93 16 5 C -0.14 -3.52 6.66 22.04 0.15 -3.37 16 6 Cl -0.04 -1.00 29.30 -2.72 -0.08 -1.08 16 7 C -0.13 -3.71 10.35 22.59 0.23 -3.48 16 8 C -0.05 -1.78 6.88 40.35 0.28 -1.51 16 9 C 0.58 22.40 7.74 86.44 0.67 23.07 16 10 O -0.58 -25.74 13.57 -4.31 -0.06 -25.80 16 11 N -0.68 -24.23 4.90 -446.14 -2.19 -26.42 16 12 C 0.13 4.88 2.85 45.07 0.13 5.01 16 13 H 0.07 2.67 7.52 -2.39 -0.02 2.65 16 14 C -0.11 -3.17 5.59 30.62 0.17 -3.00 16 15 C -0.12 -3.39 5.21 30.67 0.16 -3.23 16 16 C 0.15 5.82 3.49 44.97 0.16 5.97 16 17 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 18 C -0.13 -4.33 8.01 71.98 0.58 -3.75 16 19 N -0.59 -28.20 2.91 -674.53 -1.96 -30.17 16 20 C -0.23 -12.43 8.40 84.03 0.71 -11.72 16 21 H 0.07 3.49 6.42 -2.91 -0.02 3.47 16 22 C -0.05 -2.69 5.25 84.86 0.45 -2.25 16 23 N -0.94 -56.89 10.90 21.65 0.24 -56.65 16 24 Si 0.95 46.20 29.55 68.60 2.03 48.23 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 27 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 28 C 0.17 8.46 4.84 86.31 0.42 8.88 16 29 H 0.04 1.15 7.22 -2.39 -0.02 1.14 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.13 2.07 8.11 -2.38 -0.02 2.05 16 33 H 0.07 2.33 6.92 -2.39 -0.02 2.31 16 34 H 0.21 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.16 4.08 7.45 -2.91 -0.02 4.06 16 36 H 0.41 12.74 5.67 -92.71 -0.53 12.22 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 1.68 6.40 -2.39 -0.02 1.66 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.03 1.34 7.69 -2.38 -0.02 1.33 16 43 H 0.05 1.71 7.39 -2.39 -0.02 1.69 16 44 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.05 2.95 6.19 -2.39 -0.01 2.93 16 Total: -1.00 -70.43 376.50 3.32 -67.11 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.47 Total: 24.54 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.29 Total: 12.88 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -5.33 Total: -125.87 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.06 Total: -25.80 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -70.43 3.32 -67.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072071921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.326 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds