Wall clock time and date at job start Wed Apr 1 2020 00:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47361 * 2 1 4 4 C 1.35635 * 125.67874 * 260.62460 * 3 2 1 5 5 C 1.35518 * 108.85219 * 179.88667 * 4 3 2 6 6 Cl 1.73595 * 126.07435 * 180.12544 * 5 4 3 7 7 C 1.39889 * 107.85072 * 0.36978 * 5 4 3 8 8 C 1.37644 * 125.67585 * 80.92487 * 3 2 1 9 9 C 1.46670 * 126.22111 * 0.02562 * 8 3 2 10 10 O 1.21695 * 119.99669 * 5.24180 * 9 8 3 11 11 N 1.34770 * 119.99844 * 185.24184 * 9 8 3 12 12 C 1.46498 * 120.00049 * 184.82309 * 11 9 8 13 13 H 1.09004 * 109.49411 * 35.07213 * 12 11 9 14 14 C 1.53048 * 109.49742 * 155.16403 * 12 11 9 15 15 C 1.53034 * 109.53552 * 58.58898 * 14 12 11 16 16 C 1.53197 * 109.31229 * 61.36761 * 15 14 12 17 17 H 1.08997 * 109.70100 * 65.22378 * 16 15 14 18 18 C 1.53001 * 109.58275 * 185.57330 * 16 15 14 19 19 N 1.46918 * 108.77415 * 305.36244 * 16 15 14 20 20 C 1.36942 * 120.63031 * 233.58695 * 19 16 15 21 21 H 1.08005 * 119.99842 * 32.08669 * 20 19 16 22 22 C 1.38816 * 119.99967 * 212.08544 * 20 19 16 23 23 N 1.31611 * 119.99956 * 10.46124 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 190.46094 * 22 20 19 25 25 H 1.48494 * 109.47310 * 89.99985 * 24 22 20 26 26 H 1.48503 * 109.46659 * 209.99881 * 24 22 20 27 27 H 1.48501 * 109.47134 * 329.99776 * 24 22 20 28 28 C 1.46927 * 118.74285 * 53.60783 * 19 16 15 29 29 H 1.09002 * 109.47113 * 59.99867 * 1 2 3 30 30 H 1.08995 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47372 * 299.99845 * 1 2 3 32 32 H 1.09004 * 109.47372 * 240.00155 * 2 1 3 33 33 H 1.08993 * 109.47249 * 120.00135 * 2 1 3 34 34 H 1.08000 * 125.57269 * 359.97438 * 4 3 2 35 35 H 1.07998 * 126.45017 * 179.75548 * 7 5 4 36 36 H 0.96998 * 120.00416 * 4.83319 * 11 9 8 37 37 H 1.08998 * 109.46191 * 178.61353 * 14 12 11 38 38 H 1.09004 * 109.45741 * 298.56905 * 14 12 11 39 39 H 1.08993 * 109.50216 * 301.41064 * 15 14 12 40 40 H 1.08999 * 109.49676 * 181.31833 * 15 14 12 41 41 H 1.09007 * 109.46933 * 179.28785 * 18 16 15 42 42 H 1.08999 * 109.47473 * 299.28875 * 18 16 15 43 43 H 1.08996 * 109.47071 * 59.29171 * 18 16 15 44 44 H 0.97004 * 120.00162 * 180.02562 * 23 22 20 45 45 H 1.08996 * 109.59058 * 186.60235 * 28 19 16 46 46 H 1.09002 * 109.58102 * 66.17577 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4513 2.0672 -1.0870 5 6 2.8211 3.3123 -0.7004 6 17 3.4397 4.5621 -1.7342 7 6 2.6211 3.4095 0.6807 8 6 2.1197 2.1968 1.1041 9 6 1.7609 1.8403 2.4809 10 8 1.4179 0.7029 2.7451 11 7 1.8111 2.7722 3.4531 12 6 1.5557 2.3931 4.8450 13 1 1.9466 1.3920 5.0269 14 6 2.2450 3.3892 5.7804 15 6 1.7205 4.7997 5.5023 16 6 0.2138 4.8429 5.7756 17 1 0.0277 4.6744 6.8362 18 6 -0.3423 6.2088 5.3680 19 7 -0.4402 3.7897 4.9872 20 6 -1.4845 4.0889 4.1534 21 1 -1.5244 5.0495 3.6612 22 6 -2.4917 3.1576 3.9407 23 7 -2.5574 2.0769 4.6890 24 14 -3.7538 3.4385 2.5925 25 1 -3.2684 2.8337 1.3262 26 1 -5.0411 2.8080 2.9806 27 1 -3.9554 4.8970 2.3992 28 6 0.0471 2.4091 5.1108 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.4930 1.6842 -2.0960 35 1 2.8218 4.2720 1.2989 36 1 2.0162 3.6939 3.2314 37 1 2.0343 3.1209 6.8156 38 1 3.3214 3.3619 5.6104 39 1 1.9090 5.0591 4.4606 40 1 2.2288 5.5116 6.1526 41 1 -1.4166 6.2332 5.5514 42 1 0.1441 6.9887 5.9539 43 1 -0.1508 6.3776 4.3084 44 1 -3.2610 1.4260 4.5402 45 1 -0.4591 1.7762 4.3819 46 1 -0.1505 2.0406 6.1174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072071922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:07 Heat of formation + Delta-G solvation = 22.007442 kcal Electronic energy + Delta-G solvation = -29003.844136 eV Core-core repulsion = 25148.597830 eV Total energy + Delta-G solvation = -3855.246307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40878 -39.14872 -37.37877 -36.37510 -34.42086 -33.73296 -32.69451 -31.01054 -29.90825 -29.18206 -28.83750 -26.15706 -24.95939 -23.62548 -22.63712 -22.13643 -20.81669 -20.34141 -19.46842 -18.70451 -17.82528 -16.35725 -15.80047 -15.43220 -15.29666 -14.91794 -14.45277 -14.19504 -14.06950 -13.91938 -13.71119 -13.51193 -13.19710 -13.04880 -12.79834 -12.68581 -12.57669 -12.46922 -11.96759 -11.88702 -11.34926 -11.24526 -11.14183 -11.10941 -10.91532 -10.86995 -10.81834 -10.72516 -10.37576 -10.31195 -9.94570 -9.59960 -9.46352 -9.39246 -8.62884 -8.45964 -8.42590 -8.09189 -6.53726 -5.72704 -3.20691 1.61214 2.15523 2.53106 2.91403 3.38351 3.45492 3.45620 3.72030 3.85876 4.51073 4.71240 4.87176 5.06044 5.10655 5.25519 5.32982 5.33538 5.37804 5.45091 5.52862 5.60528 5.61740 5.75092 5.88081 6.00386 6.03022 6.12441 6.16311 6.33832 6.34703 6.37455 6.45147 6.49833 6.54956 6.62406 6.69804 6.86098 6.91831 7.07753 7.11768 7.14903 7.40223 7.73825 7.85821 8.07788 8.53535 8.72348 9.26727 9.89581 10.46816 11.34733 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009510 B = 0.004720 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.487343 B = 5930.322886 C = 6603.695942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 N -0.399 5.399 4 C 0.022 3.978 5 C -0.121 4.121 6 Cl -0.058 7.058 7 C -0.136 4.136 8 C -0.016 4.016 9 C 0.586 3.414 10 O -0.548 6.548 11 N -0.685 5.685 12 C 0.121 3.879 13 H 0.075 0.925 14 C -0.119 4.119 15 C -0.131 4.131 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.135 4.135 19 N -0.582 5.582 20 C -0.247 4.247 21 H 0.066 0.934 22 C 0.008 3.992 23 N -0.900 5.900 24 Si 0.895 3.105 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.163 3.837 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.173 0.827 35 H 0.150 0.850 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.051 0.949 44 H 0.252 0.748 45 H 0.098 0.902 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.431 0.372 -7.667 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.072 5.072 4 C -0.114 4.114 5 C -0.154 4.154 6 Cl -0.030 7.030 7 C -0.162 4.162 8 C -0.131 4.131 9 C 0.372 3.628 10 O -0.428 6.428 11 N -0.334 5.334 12 C 0.015 3.985 13 H 0.093 0.907 14 C -0.157 4.157 15 C -0.170 4.170 16 C 0.058 3.942 17 H 0.042 0.958 18 C -0.193 4.193 19 N -0.305 5.305 20 C -0.376 4.376 21 H 0.084 0.916 22 C -0.191 4.191 23 N -0.544 5.544 24 Si 0.726 3.274 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.036 3.964 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.190 0.810 35 H 0.167 0.833 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.116 0.884 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.952 -0.838 -7.495 14.132 hybrid contribution -0.637 0.700 -1.045 1.410 sum 11.315 -0.138 -8.540 14.177 Atomic orbital electron populations 1.22093 0.93481 1.03199 1.03616 1.22083 0.96440 0.78677 1.04714 1.44032 1.45537 1.11968 1.05677 1.21598 1.05300 0.91998 0.92521 1.19828 1.12525 0.91167 0.91864 1.98304 1.86352 1.51714 1.66616 1.21146 1.04819 0.96868 0.93370 1.20271 1.11882 0.91657 0.89246 1.16751 0.77848 0.85375 0.82860 1.90777 1.48542 1.20472 1.82959 1.45528 1.69842 1.10978 1.07100 1.21836 1.00591 0.97211 0.78857 0.90682 1.21697 0.98435 0.95933 0.99621 1.22070 0.98871 0.95538 1.00550 1.20471 0.89802 0.89735 0.94145 0.95764 1.21792 1.01502 0.95506 1.00498 1.44006 1.36203 1.02235 1.48087 1.19058 0.98174 1.01643 1.18774 0.91646 1.25120 0.97080 0.98317 0.98548 1.69947 1.33951 1.11697 1.38854 0.86401 0.81238 0.77709 0.82080 1.21641 1.21799 1.20460 1.21190 0.87404 0.87511 1.00252 0.92549 0.90676 0.90479 0.89461 0.87374 0.80975 0.83258 0.76701 0.91017 0.92970 0.92669 0.92814 0.92054 0.94468 0.92969 0.93756 0.88352 0.95727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.16 37.15 0.38 -1.94 16 2 C 0.10 1.27 6.11 -4.05 -0.02 1.25 16 3 N -0.40 -5.70 2.77 -112.83 -0.31 -6.01 16 4 C 0.02 0.28 11.34 -16.84 -0.19 0.09 16 5 C -0.12 -1.64 6.66 -39.94 -0.27 -1.90 16 6 Cl -0.06 -0.71 29.30 -51.86 -1.52 -2.22 16 7 C -0.14 -1.99 10.34 -39.09 -0.40 -2.40 16 8 C -0.02 -0.26 6.88 -81.98 -0.56 -0.82 16 9 C 0.59 10.93 7.73 -12.86 -0.10 10.83 16 10 O -0.55 -11.54 13.91 5.19 0.07 -11.47 16 11 N -0.68 -12.08 4.89 -55.00 -0.27 -12.35 16 12 C 0.12 2.23 2.77 -67.81 -0.19 2.04 16 13 H 0.08 1.41 7.65 -51.93 -0.40 1.01 16 14 C -0.12 -1.82 5.59 -26.69 -0.15 -1.97 16 15 C -0.13 -2.04 5.21 -26.61 -0.14 -2.18 16 16 C 0.17 3.20 3.50 -67.60 -0.24 2.96 16 17 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 18 C -0.14 -2.44 7.97 37.16 0.30 -2.14 16 19 N -0.58 -13.57 2.90 -164.78 -0.48 -14.05 16 20 C -0.25 -6.44 8.52 -15.06 -0.13 -6.57 16 21 H 0.07 1.69 6.30 -52.48 -0.33 1.36 16 22 C 0.01 0.23 5.05 -17.43 -0.09 0.14 16 23 N -0.90 -26.04 11.09 55.49 0.62 -25.42 16 24 Si 0.90 22.00 29.57 -169.99 -5.03 16.97 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 28 C 0.16 3.79 4.85 -3.71 -0.02 3.77 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.42 7.57 -51.93 -0.39 1.03 16 32 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.11 1.51 6.74 -51.93 -0.35 1.16 16 34 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.15 1.95 7.49 -52.49 -0.39 1.56 16 36 H 0.40 6.41 5.72 -40.82 -0.23 6.18 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.85 6.40 -51.93 -0.33 0.52 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.22 7.65 -51.93 -0.40 0.82 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.95 7.43 -51.93 -0.39 0.56 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.10 2.70 6.12 -51.93 -0.32 2.39 16 46 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -30.34 377.08 -9.95 -40.29 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.89 Total: 7.42 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -1.82 Total: 1.17 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.44 Total: -57.83 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.52 Total: -2.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.34 -9.95 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072071922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.294 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds