Wall clock time and date at job start Tue Mar 31 2020 23:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47040 * 2 1 4 4 C 1.35624 * 125.67849 * 265.40677 * 3 2 1 5 5 C 1.35514 * 108.85620 * 179.97438 * 4 3 2 6 6 Cl 1.73597 * 126.07759 * 180.26336 * 5 4 3 7 7 C 1.39890 * 107.84563 * 359.97438 * 5 4 3 8 8 C 1.37633 * 125.67450 * 85.35513 * 3 2 1 9 9 C 1.46675 * 126.22337 * 0.02562 * 8 3 2 10 10 O 1.21695 * 119.99917 * 354.74171 * 9 8 3 11 11 N 1.34772 * 119.99950 * 174.73611 * 9 8 3 12 12 C 1.46497 * 120.00022 * 185.01662 * 11 9 8 13 13 C 1.53002 * 109.47305 * 180.02562 * 12 11 9 14 14 H 1.09000 * 110.88951 * 51.11594 * 13 12 11 15 15 C 1.54916 * 111.00085 * 287.19418 * 13 12 11 16 16 N 1.47420 * 104.82994 * 204.91217 * 15 13 12 17 17 C 1.36933 * 125.65073 * 204.14678 * 16 15 13 18 18 H 1.08006 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00585 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00026 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00343 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47017 * 90.00497 * 21 19 17 23 23 H 1.48502 * 109.46892 * 210.00017 * 21 19 17 24 24 H 1.48492 * 109.47157 * 330.00289 * 21 19 17 25 25 C 1.47023 * 108.70463 * 24.13568 * 16 15 13 26 26 C 1.54322 * 107.27053 * 358.93433 * 25 16 15 27 27 H 1.09001 * 110.87116 * 96.24414 * 26 25 16 28 28 C 1.52997 * 110.71961 * 219.44639 * 26 25 16 29 29 H 1.09000 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47465 * 299.99853 * 1 2 3 31 31 H 1.09000 * 109.46879 * 60.00070 * 1 2 3 32 32 H 1.09005 * 109.47178 * 239.99955 * 2 1 3 33 33 H 1.09000 * 109.46879 * 119.99930 * 2 1 3 34 34 H 1.08002 * 125.57180 * 359.97438 * 4 3 2 35 35 H 1.08004 * 126.45066 * 180.02562 * 7 5 4 36 36 H 0.97003 * 120.00226 * 5.01781 * 11 9 8 37 37 H 1.09004 * 109.47602 * 299.99917 * 12 11 9 38 38 H 1.09000 * 109.47499 * 60.00213 * 12 11 9 39 39 H 1.09001 * 110.36900 * 323.75554 * 15 13 12 40 40 H 1.09003 * 110.36210 * 86.07752 * 15 13 12 41 41 H 0.97003 * 120.00661 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.88129 * 239.51621 * 25 16 15 43 43 H 1.08994 * 110.01373 * 118.42690 * 25 16 15 44 44 H 1.09000 * 109.47099 * 173.51928 * 28 26 25 45 45 H 1.09000 * 109.47188 * 293.51927 * 28 26 25 46 46 H 1.08999 * 109.47574 * 53.52746 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3652 2.0976 -1.0981 5 6 2.7674 3.3313 -0.7073 6 17 3.3017 4.6109 -1.7516 7 6 2.6692 3.3925 0.6868 8 6 2.2005 2.1682 1.1144 9 6 1.9427 1.7760 2.5040 10 8 1.4376 0.6959 2.7477 11 7 2.2652 2.6116 3.5110 12 6 2.1102 2.1773 4.9014 13 6 2.5424 3.3060 5.8396 14 1 2.0462 4.2405 5.5777 15 6 4.0825 3.4736 5.8340 16 7 4.3998 4.0895 7.1352 17 6 5.5122 4.8377 7.4140 18 1 6.2479 5.0189 6.6444 19 6 5.6943 5.3635 8.6857 20 7 4.7980 5.1423 9.6238 21 14 7.2115 6.3849 9.0657 22 1 6.9282 7.8153 8.7852 23 1 7.5713 6.2231 10.4974 24 1 8.3410 5.9282 8.2168 25 6 3.3239 3.7675 8.0841 26 6 2.2754 2.9307 7.3212 27 1 2.4359 1.8649 7.4841 28 6 0.8579 3.3320 7.7343 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3271 1.7429 -2.1175 35 1 2.9143 4.2393 1.3108 36 1 2.6000 3.5007 3.3151 37 1 1.0659 1.9284 5.0902 38 1 2.7308 1.2990 5.0792 39 1 4.5694 2.5025 5.7450 40 1 4.3897 4.1291 5.0190 41 1 4.9254 5.5094 10.5127 42 1 2.8679 4.6861 8.4532 43 1 3.7227 3.1907 8.9185 44 1 0.1353 2.8136 7.1040 45 1 0.6923 3.0595 8.7766 46 1 0.7361 4.4087 7.6164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093201080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:31 Heat of formation + Delta-G solvation = 20.122495 kcal Electronic energy + Delta-G solvation = -27088.479012 eV Core-core repulsion = 23233.150968 eV Total energy + Delta-G solvation = -3855.328044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78125 -39.32003 -37.92638 -36.62831 -34.99081 -34.13433 -32.93745 -30.74367 -30.37598 -29.51370 -28.69016 -25.99301 -25.16496 -23.97739 -23.23626 -22.17741 -20.89915 -20.17073 -19.87521 -19.11006 -18.12981 -16.80956 -16.14758 -16.00076 -15.73193 -15.12884 -14.86493 -14.66503 -14.39833 -14.23133 -13.85666 -13.75735 -13.38152 -13.20101 -13.05583 -12.92772 -12.86701 -12.52831 -12.38224 -11.86486 -11.70476 -11.64323 -11.53859 -11.39844 -11.21929 -11.07330 -10.81444 -10.77477 -10.26236 -10.08001 -10.00134 -9.91822 -9.73240 -9.56549 -9.09772 -8.94696 -8.59935 -8.46899 -6.82818 -5.70884 -3.04358 1.17997 1.87045 2.19403 2.54392 3.19356 3.31446 3.40404 3.45643 3.47426 4.36662 4.49238 4.55086 4.59380 4.70306 4.91870 4.96327 5.07985 5.19046 5.22126 5.30891 5.34767 5.48341 5.52765 5.55736 5.67783 5.73876 5.80526 5.84224 6.00790 6.07678 6.15435 6.18079 6.26812 6.39214 6.47412 6.50934 6.57279 6.62281 6.74535 6.75836 6.93549 7.45647 7.57350 7.63967 7.84206 8.10214 8.26360 9.22569 9.82906 10.48820 11.40711 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012361 B = 0.002652 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.603577 B =10556.638152 C =12324.503087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.400 5.400 4 C 0.030 3.970 5 C -0.121 4.121 6 Cl -0.051 7.051 7 C -0.129 4.129 8 C -0.031 4.031 9 C 0.587 3.413 10 O -0.549 6.549 11 N -0.709 5.709 12 C 0.136 3.864 13 C -0.114 4.114 14 H 0.082 0.918 15 C 0.141 3.859 16 N -0.606 5.606 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.184 3.816 26 C -0.110 4.110 27 H 0.067 0.933 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.176 0.824 35 H 0.154 0.846 36 H 0.405 0.595 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.019 0.981 40 H 0.037 0.963 41 H 0.252 0.748 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.053 0.947 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -8.047 -21.106 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.022 4.022 3 N -0.073 5.073 4 C -0.107 4.107 5 C -0.154 4.154 6 Cl -0.022 7.022 7 C -0.155 4.155 8 C -0.145 4.145 9 C 0.374 3.626 10 O -0.428 6.428 11 N -0.360 5.360 12 C 0.012 3.988 13 C -0.133 4.133 14 H 0.100 0.900 15 C 0.015 3.985 16 N -0.332 5.332 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.059 3.941 26 C -0.130 4.130 27 H 0.086 0.914 28 C -0.192 4.192 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.193 0.807 35 H 0.172 0.828 36 H 0.240 0.760 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.037 0.963 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.826 -8.989 -20.752 24.657 hybrid contribution 1.084 1.174 -0.014 1.598 sum -8.742 -7.816 -20.765 23.848 Atomic orbital electron populations 1.22079 0.93669 1.03259 1.03093 1.22107 0.96271 0.78711 1.05125 1.44016 1.46614 1.11959 1.04712 1.21682 1.05278 0.91441 0.92281 1.19893 1.12704 0.91297 0.91543 1.98331 1.89194 1.49002 1.65706 1.21271 1.04010 0.96867 0.93396 1.20094 1.13696 0.92354 0.88399 1.16855 0.78325 0.84299 0.83154 1.90791 1.44362 1.22736 1.84951 1.45754 1.66139 1.17905 1.06185 1.21451 1.01419 0.97728 0.78153 1.22695 0.98510 0.97217 0.94924 0.90017 1.21591 0.91017 0.95969 0.89911 1.44454 1.22793 1.60005 1.05956 1.19053 0.97076 1.23788 0.95742 0.90476 1.24796 0.98622 1.00955 0.96077 1.69959 1.34889 1.49195 1.02879 0.86129 0.82283 0.80088 0.77326 1.21613 1.21704 1.20707 1.21216 0.85904 0.96365 0.90621 1.22436 0.96483 1.00307 0.93734 0.91426 1.21697 0.95588 1.01196 1.00722 0.90541 0.91090 0.92365 0.89144 0.87369 0.80674 0.82792 0.76020 0.91331 0.91199 0.96344 0.94523 0.93776 0.93298 0.94047 0.93677 0.92763 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 10.17 37.16 0.38 -0.86 16 2 C 0.10 0.78 6.10 -4.04 -0.02 0.76 16 3 N -0.40 -3.95 2.76 -112.82 -0.31 -4.26 16 4 C 0.03 0.27 11.35 -16.85 -0.19 0.07 16 5 C -0.12 -1.24 6.66 -39.94 -0.27 -1.51 16 6 Cl -0.05 -0.50 29.30 -51.86 -1.52 -2.01 16 7 C -0.13 -1.39 10.35 -39.09 -0.40 -1.80 16 8 C -0.03 -0.37 6.88 -81.98 -0.56 -0.93 16 9 C 0.59 7.76 7.77 -12.86 -0.10 7.66 16 10 O -0.55 -8.39 14.29 5.19 0.07 -8.32 16 11 N -0.71 -8.85 5.49 -61.62 -0.34 -9.19 16 12 C 0.14 1.87 5.14 -4.04 -0.02 1.85 16 13 C -0.11 -1.82 2.50 -88.47 -0.22 -2.04 16 14 H 0.08 1.29 8.05 -51.93 -0.42 0.88 16 15 C 0.14 2.78 6.65 -2.53 -0.02 2.76 16 16 N -0.61 -15.13 3.39 -170.07 -0.58 -15.71 16 17 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 18 H 0.08 2.06 7.83 -52.48 -0.41 1.64 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -26.86 10.31 55.49 0.57 -26.29 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.18 4.33 4.97 -3.06 -0.02 4.32 16 26 C -0.11 -1.94 3.02 -88.79 -0.27 -2.20 16 27 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 28 C -0.13 -2.04 9.16 37.16 0.34 -1.70 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.72 7.62 -51.93 -0.40 0.32 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.47 8.13 -51.93 -0.42 0.04 16 33 H 0.11 1.05 6.72 -51.93 -0.35 0.70 16 34 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.15 1.45 7.45 -52.48 -0.39 1.06 16 36 H 0.40 4.46 7.37 -40.82 -0.30 4.16 16 37 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 39 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.05 1.28 7.01 -51.93 -0.36 0.91 16 43 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 44 H 0.04 0.59 8.10 -51.93 -0.42 0.16 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -31.82 387.67 -10.10 -41.91 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.19 Total: 1.42 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.62 Total: -0.40 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.65 Total: -55.45 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.07 Total: -8.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.82 -10.10 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093201080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.037 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds