Wall clock time and date at job start Tue Mar 31 2020 23:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81402 * 103.00404 * 2 1 4 4 H 1.09000 * 109.46861 * 305.00035 * 3 2 1 5 5 C 1.53003 * 109.46820 * 64.99959 * 3 2 1 6 6 C 1.50693 * 109.47062 * 185.00175 * 3 2 1 7 7 O 1.21277 * 120.00507 * 339.99902 * 6 3 2 8 8 N 1.34780 * 119.99872 * 160.00460 * 6 3 2 9 9 C 1.47021 * 125.64551 * 359.96909 * 8 6 3 10 10 C 1.54331 * 107.26847 * 179.00192 * 9 8 6 11 11 C 1.55158 * 102.94193 * 337.80592 * 10 9 8 12 12 H 1.09004 * 111.00289 * 277.39479 * 11 10 9 13 13 N 1.46492 * 111.00220 * 153.57949 * 11 10 9 14 14 C 1.35317 * 125.86956 * 329.59500 * 13 11 10 15 15 C 1.35349 * 106.17446 * 179.97438 * 14 13 11 16 16 C 1.50703 * 126.75129 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47470 * 95.04643 * 16 15 14 18 18 C 1.36932 * 120.00287 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99540 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00200 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99983 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47294 * 89.99997 * 22 20 18 24 24 H 1.48503 * 109.46988 * 210.00048 * 22 20 18 25 25 H 1.48506 * 109.47040 * 330.00013 * 22 20 18 26 26 N 1.33777 * 106.49799 * 0.02562 * 15 14 13 27 27 N 1.28634 * 108.88349 * 359.97438 * 26 15 14 28 28 C 1.47466 * 125.63062 * 180.02562 * 8 6 3 29 29 H 1.08996 * 109.46873 * 300.00272 * 1 2 3 30 30 H 1.08998 * 109.47081 * 59.99564 * 1 2 3 31 31 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46689 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.46753 * 300.00126 * 5 3 2 34 34 H 1.08997 * 109.46822 * 59.99839 * 5 3 2 35 35 H 1.08998 * 109.88531 * 59.58180 * 9 8 6 36 36 H 1.08999 * 110.01365 * 298.48582 * 9 8 6 37 37 H 1.08998 * 110.71580 * 219.44399 * 10 9 8 38 38 H 1.08999 * 110.72340 * 96.17364 * 10 9 8 39 39 H 1.07994 * 126.91360 * 359.93700 * 14 13 11 40 40 H 1.09001 * 109.47240 * 215.04786 * 16 15 14 41 41 H 1.09006 * 109.46803 * 335.04653 * 16 15 14 42 42 H 0.97002 * 119.99348 * 0.02562 * 17 16 15 43 43 H 0.96997 * 120.00045 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.35084 * 85.22789 * 28 8 6 45 45 H 1.09001 * 110.40054 * 322.88810 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 -0.8418 5 6 1.7429 2.4015 1.3074 6 6 3.7143 1.9384 -0.1239 7 8 4.4552 1.0198 0.1554 8 7 4.2254 3.1123 -0.5450 9 6 3.4459 4.3026 -0.9154 10 6 4.4520 5.4055 -1.3069 11 6 5.7548 4.9565 -0.5937 12 1 5.7563 5.2695 0.4505 13 7 6.9378 5.4640 -1.2929 14 6 7.0333 5.6987 -2.6221 15 6 8.2888 6.1573 -2.8348 16 6 8.8893 6.5618 -4.1565 17 7 8.7505 8.0094 -4.3335 18 6 9.2270 8.6092 -5.4685 19 1 9.7048 8.0150 -6.2334 20 6 9.0959 9.9809 -5.6359 21 7 8.5141 10.7051 -4.7035 22 14 9.7453 10.7991 -7.1846 23 1 8.6784 10.8216 -8.2172 24 1 10.1614 12.1901 -6.8723 25 1 10.9126 10.0361 -7.6953 26 7 8.8923 6.1800 -1.6410 27 7 8.0650 5.7635 -0.7484 28 6 5.6591 3.4146 -0.7115 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9878 3.4636 1.3072 33 1 0.6637 2.2778 1.3969 34 1 2.2355 1.9148 2.1491 35 1 2.8463 4.6319 -0.0669 36 1 2.7974 4.0753 -1.7615 37 1 4.1239 6.3762 -0.9354 38 1 4.5935 5.4326 -2.3873 39 1 6.2630 5.5494 -3.3641 40 1 9.9456 6.2934 -4.1730 41 1 8.3706 6.0455 -4.9643 42 1 8.3217 8.5430 -3.6463 43 1 8.4228 11.6637 -4.8203 44 1 6.0043 3.0868 -1.6920 45 1 6.2421 2.9372 0.0761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098618921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:27 Heat of formation + Delta-G solvation = 93.975472 kcal Electronic energy + Delta-G solvation = -26476.249043 eV Core-core repulsion = 22658.459961 eV Total energy + Delta-G solvation = -3817.789081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.10179 -40.70894 -38.22234 -35.14212 -34.41640 -33.57216 -31.96747 -30.96909 -29.99960 -29.50972 -29.11547 -25.97554 -25.76473 -23.94686 -23.25194 -22.75912 -20.93511 -20.69411 -20.13486 -18.15658 -17.58606 -17.18483 -17.04564 -16.17675 -16.13585 -15.62511 -14.94814 -14.89079 -14.82986 -14.52386 -14.34175 -14.10314 -13.84823 -13.75976 -13.45131 -13.32051 -13.15742 -12.88432 -12.81347 -12.61933 -12.48716 -12.27015 -12.17592 -12.02027 -11.53098 -11.27303 -10.91979 -10.81591 -10.50708 -10.43450 -10.37176 -10.10478 -9.94015 -9.74522 -9.33441 -8.91589 -8.87505 -8.17179 -6.93131 -5.75257 -3.04874 0.88095 1.70279 1.92165 1.97277 2.11520 2.56407 2.86192 3.44694 3.50201 3.52227 3.52607 3.73525 3.97120 4.12243 4.20723 4.28541 4.32224 4.47343 4.58126 4.61532 4.62385 4.71161 4.80114 4.88146 4.98447 5.01457 5.16483 5.18207 5.20710 5.25660 5.29990 5.42893 5.45944 5.50964 5.61108 5.79018 6.15610 6.36150 6.62677 6.68801 6.75187 6.76298 7.50587 7.70322 8.41988 8.77887 9.53919 10.09215 10.45282 11.47464 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.001894 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.439261 B =14778.583479 C =15153.504347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.186 6.186 3 C -0.091 4.091 4 H 0.109 0.891 5 C -0.144 4.144 6 C 0.554 3.446 7 O -0.509 6.509 8 N -0.615 5.615 9 C 0.100 3.900 10 C -0.142 4.142 11 C 0.136 3.864 12 H 0.130 0.870 13 N -0.293 5.293 14 C -0.044 4.044 15 C -0.001 4.001 16 C 0.232 3.768 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 N -0.250 5.250 27 N -0.091 5.091 28 C 0.103 3.897 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.188 0.812 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.083 0.917 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.063 -18.695 11.565 31.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.040 5.960 3 C -0.222 4.222 4 H 0.127 0.873 5 C -0.203 4.203 6 C 0.340 3.660 7 O -0.383 6.383 8 N -0.351 5.351 9 C -0.023 4.023 10 C -0.181 4.181 11 C 0.032 3.968 12 H 0.148 0.852 13 N -0.087 5.087 14 C -0.194 4.194 15 C -0.139 4.139 16 C 0.103 3.897 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 N -0.117 5.117 27 N -0.070 5.070 28 C -0.021 4.021 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.205 0.795 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.133 -20.068 12.909 31.221 hybrid contribution -1.518 1.838 -1.609 2.876 sum -21.651 -18.230 11.300 30.476 Atomic orbital electron populations 1.23569 0.95342 1.06892 1.05024 1.87555 1.05186 1.05408 1.97858 1.23293 0.96344 0.98906 1.03706 0.87255 1.22029 1.02209 1.01219 0.94840 1.19317 0.88943 0.80998 0.76741 1.90795 1.60440 1.38932 1.48144 1.48205 1.07260 1.12625 1.67036 1.22172 0.94672 0.84249 1.01246 1.23141 0.92308 0.99702 1.02921 1.22581 0.81825 0.93827 0.98556 0.85231 1.47002 1.11407 1.43852 1.06480 1.23284 1.01110 1.08734 0.86225 1.22482 0.91977 1.02823 0.96569 1.18967 0.97375 0.87373 0.86025 1.42298 1.71622 1.00540 1.22574 1.19233 1.31116 0.90762 0.95936 0.90866 1.24758 1.01525 0.96287 0.98372 1.69680 1.48762 1.05715 1.33906 0.86153 0.78448 0.78823 0.82531 1.21756 1.21796 1.20654 1.75125 1.23400 1.14747 0.98443 1.78315 0.89362 1.16755 1.22533 1.22522 0.82321 0.93062 1.04185 0.90252 0.90409 0.87614 0.90994 0.90952 0.90390 0.90090 0.89959 0.87688 0.88345 0.79507 0.94228 0.94429 0.78112 0.93531 0.89899 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 10.45 101.05 1.06 0.50 16 2 S -0.19 -1.52 21.04 -107.50 -2.26 -3.78 16 3 C -0.09 -0.57 2.59 -27.89 -0.07 -0.65 16 4 H 0.11 0.46 7.52 -51.92 -0.39 0.07 16 5 C -0.14 -0.62 9.07 37.16 0.34 -0.29 16 6 C 0.55 5.20 7.02 -10.99 -0.08 5.12 16 7 O -0.51 -7.04 16.30 5.56 0.09 -6.95 16 8 N -0.61 -4.54 3.33 -170.47 -0.57 -5.10 16 9 C 0.10 0.41 6.19 -3.06 -0.02 0.39 16 10 C -0.14 -0.78 6.35 -24.89 -0.16 -0.94 16 11 C 0.14 1.15 4.10 -65.77 -0.27 0.88 16 12 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 13 N -0.29 -3.87 3.38 -52.67 -0.18 -4.04 16 14 C -0.04 -0.62 10.60 -17.04 -0.18 -0.80 16 15 C 0.00 -0.02 6.62 -82.77 -0.55 -0.57 16 16 C 0.23 4.80 6.82 -5.19 -0.04 4.76 16 17 N -0.73 -18.72 5.59 -61.08 -0.34 -19.06 16 18 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 N -0.25 -5.01 12.41 33.29 0.41 -4.60 16 27 N -0.09 -1.57 13.16 60.35 0.79 -0.78 16 28 C 0.10 0.90 6.60 -2.50 -0.02 0.89 16 29 H 0.08 0.23 7.14 -51.93 -0.37 -0.14 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.22 6.59 -51.93 -0.34 -0.13 16 33 H 0.07 0.20 6.92 -51.93 -0.36 -0.16 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.18 6.65 -51.93 -0.35 -0.16 16 36 H 0.08 0.23 7.93 -51.93 -0.41 -0.18 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.56 6.31 -51.93 -0.33 0.23 16 39 H 0.19 2.00 6.91 -52.49 -0.36 1.64 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.39 10.70 7.66 -40.82 -0.31 10.39 16 43 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.10 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -37.06 384.00 -7.36 -44.42 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.57 Total: 2.48 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.23 Total: 1.97 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.84 Total: -61.26 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: 0.09 Total: -6.95 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.26 Total: -3.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.06 -7.36 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.397 kcal (2) G-P(sol) polarization free energy of solvation -37.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds