Wall clock time and date at job start Tue Mar 31 2020 23:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81402 * 103.00404 * 2 1 4 4 H 1.09000 * 109.46861 * 305.00035 * 3 2 1 5 5 C 1.53003 * 109.46820 * 64.99959 * 3 2 1 6 6 C 1.50693 * 109.47062 * 185.00175 * 3 2 1 7 7 O 1.21277 * 120.00507 * 339.99902 * 6 3 2 8 8 N 1.34780 * 119.99872 * 160.00460 * 6 3 2 9 9 C 1.47021 * 125.64551 * 359.96909 * 8 6 3 10 10 C 1.54331 * 107.26847 * 179.00192 * 9 8 6 11 11 C 1.55158 * 102.94193 * 337.80592 * 10 9 8 12 12 H 1.09004 * 111.00289 * 277.39479 * 11 10 9 13 13 N 1.46492 * 111.00220 * 153.57949 * 11 10 9 14 14 C 1.35317 * 125.86956 * 329.59500 * 13 11 10 15 15 C 1.35349 * 106.17446 * 179.97438 * 14 13 11 16 16 C 1.50703 * 126.75129 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47470 * 95.04643 * 16 15 14 18 18 C 1.36932 * 120.00287 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99540 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00200 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99983 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47294 * 89.99997 * 22 20 18 24 24 H 1.48503 * 109.46988 * 210.00048 * 22 20 18 25 25 H 1.48506 * 109.47040 * 330.00013 * 22 20 18 26 26 N 1.33777 * 106.49799 * 0.02562 * 15 14 13 27 27 N 1.28634 * 108.88349 * 359.97438 * 26 15 14 28 28 C 1.47466 * 125.63062 * 180.02562 * 8 6 3 29 29 H 1.08996 * 109.46873 * 300.00272 * 1 2 3 30 30 H 1.08998 * 109.47081 * 59.99564 * 1 2 3 31 31 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46689 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.46753 * 300.00126 * 5 3 2 34 34 H 1.08997 * 109.46822 * 59.99839 * 5 3 2 35 35 H 1.08998 * 109.88531 * 59.58180 * 9 8 6 36 36 H 1.08999 * 110.01365 * 298.48582 * 9 8 6 37 37 H 1.08998 * 110.71580 * 219.44399 * 10 9 8 38 38 H 1.08999 * 110.72340 * 96.17364 * 10 9 8 39 39 H 1.07994 * 126.91360 * 359.93700 * 14 13 11 40 40 H 1.09001 * 109.47240 * 215.04786 * 16 15 14 41 41 H 1.09006 * 109.46803 * 335.04653 * 16 15 14 42 42 H 0.97002 * 119.99348 * 0.02562 * 17 16 15 43 43 H 0.96997 * 120.00045 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.35084 * 85.22789 * 28 8 6 45 45 H 1.09001 * 110.40054 * 322.88810 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 -0.8418 5 6 1.7429 2.4015 1.3074 6 6 3.7143 1.9384 -0.1239 7 8 4.4552 1.0198 0.1554 8 7 4.2254 3.1123 -0.5450 9 6 3.4459 4.3026 -0.9154 10 6 4.4520 5.4055 -1.3069 11 6 5.7548 4.9565 -0.5937 12 1 5.7563 5.2695 0.4505 13 7 6.9378 5.4640 -1.2929 14 6 7.0333 5.6987 -2.6221 15 6 8.2888 6.1573 -2.8348 16 6 8.8893 6.5618 -4.1565 17 7 8.7505 8.0094 -4.3335 18 6 9.2270 8.6092 -5.4685 19 1 9.7048 8.0150 -6.2334 20 6 9.0959 9.9809 -5.6359 21 7 8.5141 10.7051 -4.7035 22 14 9.7453 10.7991 -7.1846 23 1 8.6784 10.8216 -8.2172 24 1 10.1614 12.1901 -6.8723 25 1 10.9126 10.0361 -7.6953 26 7 8.8923 6.1800 -1.6410 27 7 8.0650 5.7635 -0.7484 28 6 5.6591 3.4146 -0.7115 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9878 3.4636 1.3072 33 1 0.6637 2.2778 1.3969 34 1 2.2355 1.9148 2.1491 35 1 2.8463 4.6319 -0.0669 36 1 2.7974 4.0753 -1.7615 37 1 4.1239 6.3762 -0.9354 38 1 4.5935 5.4326 -2.3873 39 1 6.2630 5.5494 -3.3641 40 1 9.9456 6.2934 -4.1730 41 1 8.3706 6.0455 -4.9643 42 1 8.3217 8.5430 -3.6463 43 1 8.4228 11.6637 -4.8203 44 1 6.0043 3.0868 -1.6920 45 1 6.2421 2.9372 0.0761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098618921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:26 Heat of formation + Delta-G solvation = 66.858886 kcal Electronic energy + Delta-G solvation = -26477.424906 eV Core-core repulsion = 22658.459961 eV Total energy + Delta-G solvation = -3818.964945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.33147 -41.38044 -38.96514 -36.82495 -35.44140 -34.32000 -33.64802 -31.80742 -31.55066 -30.10489 -29.55452 -27.66158 -26.42482 -24.82023 -24.63676 -23.85337 -22.24157 -21.67762 -20.72493 -19.38893 -18.80262 -18.18540 -17.78043 -17.31073 -16.86707 -16.60145 -16.29778 -15.96962 -15.57487 -15.52705 -15.22503 -15.06053 -14.78836 -14.56935 -14.34157 -14.24553 -14.16380 -13.74809 -13.57463 -13.30244 -13.25054 -13.11401 -12.92987 -12.82516 -12.75944 -12.66351 -12.55536 -12.08202 -12.04118 -11.88907 -11.77998 -11.21487 -11.02337 -10.94000 -10.82151 -10.25423 -9.93400 -9.00401 -8.75493 -7.91966 -5.22084 0.38892 0.54693 1.10845 1.38715 1.44421 1.52255 1.53639 1.60543 1.62336 1.86127 2.60698 2.92275 3.13503 3.34776 3.40564 3.43938 3.63962 3.77136 3.81074 3.91775 3.92648 4.04169 4.20695 4.24637 4.28679 4.36211 4.38074 4.47577 4.49911 4.62158 4.63305 4.68021 4.78316 4.86665 4.91108 4.93965 4.97445 5.11757 5.14686 5.18455 5.52817 5.63160 6.15854 6.27854 6.84919 7.35021 7.48043 8.05889 8.32145 9.31771 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.001894 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.439261 B =14778.583479 C =15153.504347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.276 6.276 3 C -0.070 4.070 4 H 0.139 0.861 5 C -0.141 4.141 6 C 0.546 3.454 7 O -0.566 6.566 8 N -0.609 5.609 9 C 0.098 3.902 10 C -0.134 4.134 11 C 0.129 3.871 12 H 0.140 0.860 13 N -0.276 5.276 14 C -0.014 4.014 15 C -0.035 4.035 16 C 0.235 3.765 17 N -0.738 5.738 18 C -0.243 4.243 19 H 0.083 0.917 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.282 1.282 24 H -0.299 1.299 25 H -0.270 1.270 26 N -0.296 5.296 27 N -0.111 5.111 28 C 0.107 3.893 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.228 0.772 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.264 -18.431 10.648 33.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.051 6.051 3 C -0.202 4.202 4 H 0.157 0.843 5 C -0.199 4.199 6 C 0.335 3.665 7 O -0.444 6.444 8 N -0.344 5.344 9 C -0.023 4.023 10 C -0.173 4.173 11 C 0.027 3.973 12 H 0.158 0.842 13 N -0.070 5.070 14 C -0.166 4.166 15 C -0.174 4.174 16 C 0.107 3.893 17 N -0.380 5.380 18 C -0.375 4.375 19 H 0.101 0.899 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.209 1.209 24 H -0.226 1.226 25 H -0.195 1.195 26 N -0.163 5.163 27 N -0.089 5.089 28 C -0.018 4.018 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.245 0.755 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.351 -19.830 12.000 32.901 hybrid contribution -0.590 1.640 -1.260 2.151 sum -23.941 -18.190 10.740 31.928 Atomic orbital electron populations 1.23578 0.90822 1.07686 1.06516 1.87895 1.10254 1.08870 1.98116 1.23259 0.93938 0.97041 1.05927 0.84299 1.22047 1.03263 1.01843 0.92790 1.19949 0.90162 0.80625 0.75807 1.90771 1.61969 1.40958 1.50681 1.48234 1.06861 1.13205 1.66056 1.22484 0.94217 0.82104 1.03491 1.23229 0.90279 1.00976 1.02803 1.22995 0.81423 0.93539 0.99358 0.84210 1.47321 1.11461 1.41785 1.06424 1.23698 1.00168 1.05618 0.87079 1.22302 0.93903 1.05613 0.95556 1.18977 0.97210 0.84824 0.88296 1.42484 1.71355 1.02577 1.21620 1.19683 1.30014 0.91228 0.96559 0.89874 1.25615 1.02576 0.97066 1.01611 1.69846 1.50709 1.05575 1.36042 0.85074 0.78188 0.77145 0.78916 1.20866 1.22595 1.19462 1.75052 1.25299 1.16504 0.99442 1.78207 0.90551 1.17706 1.22443 1.22324 0.83433 0.93051 1.03003 0.88679 0.88843 0.87231 0.88940 0.88793 0.92485 0.87207 0.87415 0.86005 0.87975 0.75534 0.95519 0.91806 0.79712 0.94076 0.90672 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.45 113.37 1.19 0.54 16 2 S -0.28 -4.37 21.04 -56.49 -1.19 -5.56 16 3 C -0.07 -0.73 2.59 29.85 0.08 -0.65 16 4 H 0.14 0.58 7.52 -2.39 -0.02 0.56 16 5 C -0.14 -0.79 9.07 71.98 0.65 -0.14 16 6 C 0.55 9.71 7.02 87.65 0.62 10.32 16 7 O -0.57 -16.25 16.30 -3.02 -0.05 -16.30 16 8 N -0.61 -7.63 3.33 -811.65 -2.70 -10.33 16 9 C 0.10 0.35 6.19 86.73 0.54 0.89 16 10 C -0.13 -0.92 6.35 31.79 0.20 -0.72 16 11 C 0.13 1.90 4.10 46.39 0.19 2.09 16 12 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 13 N -0.28 -6.92 3.38 -320.56 -1.08 -8.00 16 14 C -0.01 -0.38 10.60 83.49 0.89 0.51 16 15 C -0.04 -1.31 6.62 41.60 0.28 -1.03 16 16 C 0.23 9.68 6.82 85.63 0.58 10.26 16 17 N -0.74 -38.20 5.59 -347.17 -1.94 -40.15 16 18 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 20 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 21 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 22 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 N -0.30 -12.15 12.41 -48.60 -0.60 -12.75 16 27 N -0.11 -3.84 13.16 37.02 0.49 -3.35 16 28 C 0.11 1.77 6.60 86.85 0.57 2.34 16 29 H 0.09 0.23 7.14 -2.39 -0.02 0.22 16 30 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.15 6.59 -2.39 -0.02 0.13 16 33 H 0.09 0.15 6.92 -2.39 -0.02 0.14 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 -0.14 6.65 -2.39 -0.02 -0.16 16 36 H 0.11 -0.02 7.93 -2.39 -0.02 -0.04 16 37 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.10 0.68 6.31 -2.39 -0.02 0.67 16 39 H 0.23 3.97 6.91 -2.91 -0.02 3.95 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.37 20.98 7.66 -92.71 -0.71 20.27 16 43 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.57 8.04 -2.39 -0.02 1.56 16 Total: -1.00 -85.64 384.00 2.62 -83.02 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.31 Total: 17.31 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 7.08 Total: 7.77 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -5.56 Total: -134.14 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.05 Total: -16.30 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -1.19 Total: -5.56 kcal Total: -85.64 2.62 -83.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098618921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.876 kcal (2) G-P(sol) polarization free energy of solvation -85.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds