Wall clock time and date at job start Tue Mar 31 2020 22:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47274 * 2 1 4 4 N 1.46902 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.46903 * 110.99699 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46896 * 180.02562 * 5 4 3 7 7 C 1.35353 * 126.74884 * 95.29508 * 6 5 4 8 8 N 1.35316 * 106.17181 * 180.12613 * 7 6 5 9 9 C 1.46499 * 125.86841 * 179.90219 * 8 7 6 10 10 C 1.53504 * 114.20382 * 84.71602 * 9 8 7 11 11 N 1.47066 * 88.04678 * 220.37387 * 10 9 8 12 12 C 1.34779 * 136.05579 * 207.05024 * 11 10 9 13 13 O 1.21279 * 120.00073 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00040 * 180.02562 * 12 11 10 15 15 S 1.81000 * 109.47284 * 180.02562 * 14 12 11 16 16 C 1.76200 * 99.99817 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00217 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99641 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00242 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00001 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46973 * 89.99423 * 20 18 16 22 22 H 1.48497 * 109.47119 * 209.99663 * 20 18 16 23 23 H 1.48503 * 109.46713 * 329.99563 * 20 18 16 24 24 C 1.47064 * 87.88659 * 27.09306 * 11 10 9 25 25 N 1.28712 * 108.26333 * 359.64225 * 8 7 6 26 26 N 1.28630 * 110.18000 * 0.22465 * 25 8 7 27 27 H 1.08991 * 109.47352 * 59.99711 * 1 2 3 28 28 H 1.09005 * 109.46964 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46848 * 299.99809 * 1 2 3 30 30 H 1.09002 * 109.46848 * 240.00191 * 2 1 3 31 31 H 1.08997 * 109.47695 * 120.00016 * 2 1 3 32 32 H 1.08999 * 109.46794 * 59.99827 * 3 2 1 33 33 H 1.09004 * 109.46939 * 300.00249 * 3 2 1 34 34 H 1.00901 * 110.99784 * 303.95287 * 4 3 2 35 35 H 1.08994 * 109.47171 * 60.00228 * 5 4 3 36 36 H 1.09006 * 109.46778 * 299.99614 * 5 4 3 37 37 H 1.07997 * 126.91327 * 0.02562 * 7 6 5 38 38 H 1.09002 * 113.41645 * 217.91422 * 9 8 7 39 39 H 1.09002 * 113.46865 * 105.56483 * 10 9 8 40 40 H 1.08999 * 113.46581 * 335.18259 * 10 9 8 41 41 H 1.08999 * 109.47263 * 300.00593 * 14 12 11 42 42 H 1.09004 * 109.46716 * 60.00256 * 14 12 11 43 43 H 0.96998 * 120.00049 * 180.02562 * 19 18 16 44 44 H 1.08999 * 113.47096 * 87.65665 * 24 11 10 45 45 H 1.09005 * 113.46966 * 218.04058 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0354 2.8140 0.0000 6 6 5.5419 2.7738 -0.0013 7 6 6.3532 2.8531 -1.0818 8 7 7.6187 2.7722 -0.6097 9 6 8.8404 2.8118 -1.4172 10 6 9.3345 4.2285 -1.7418 11 7 9.6551 3.7521 -3.0958 12 6 10.5318 4.0913 -4.0616 13 8 11.3056 5.0080 -3.8835 14 6 10.5506 3.3314 -5.3629 15 16 11.8282 4.0193 -6.4449 16 6 11.6335 2.9748 -7.8505 17 1 10.8850 2.1964 -7.8453 18 6 12.4421 3.1527 -8.9645 19 7 13.3541 4.1019 -8.9711 20 14 12.2353 2.0459 -10.4551 21 1 11.2464 2.6478 -11.3851 22 1 13.5407 1.8992 -11.1477 23 1 11.7544 0.7108 -10.0173 24 6 8.5972 2.7436 -2.9325 25 7 7.5649 2.6600 0.6714 26 7 6.3405 2.6578 1.0656 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8709 0.9163 0.7805 35 1 3.6863 3.3367 0.8904 36 1 3.6855 3.3378 -0.8896 37 1 6.0512 2.9579 -2.1134 38 1 9.6187 2.1382 -1.0587 39 1 10.2119 4.5245 -1.1668 40 1 8.5444 4.9791 -1.7214 41 1 10.7674 2.2813 -5.1673 42 1 9.5782 3.4175 -5.8479 43 1 13.9189 4.2264 -9.7498 44 1 7.6100 3.0981 -3.2291 45 1 8.8472 1.7774 -3.3708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105170121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:02 Heat of formation + Delta-G solvation = 104.638176 kcal Electronic energy + Delta-G solvation = -25400.091363 eV Core-core repulsion = 21582.764651 eV Total energy + Delta-G solvation = -3817.326712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.66102 -40.59545 -37.95565 -37.34076 -34.39292 -33.38543 -32.51241 -31.29774 -30.59788 -28.24321 -27.33593 -26.43647 -25.56092 -24.35365 -24.12284 -21.98007 -21.57570 -21.13382 -19.35725 -18.18678 -17.75965 -16.94276 -16.72145 -16.57725 -15.66575 -15.50499 -15.45204 -15.06162 -14.93655 -14.87719 -14.43027 -14.07090 -13.84669 -13.69180 -13.26444 -13.21566 -13.02497 -12.82659 -12.65155 -12.53038 -12.20174 -12.06928 -11.78601 -11.64616 -11.45621 -11.22234 -11.13566 -11.10971 -11.09410 -10.84262 -10.36578 -9.92151 -9.72241 -9.59147 -9.15052 -9.02221 -8.88465 -8.36521 -6.61698 -6.29887 -4.02251 1.23689 1.72228 2.14494 2.50641 2.84454 3.16462 3.17157 3.24590 3.32777 3.40017 3.76296 3.93336 4.10607 4.13604 4.23552 4.42248 4.51935 4.56047 4.60683 4.68357 4.86106 4.89845 4.92752 5.05563 5.05629 5.08566 5.15407 5.20211 5.24029 5.25681 5.31571 5.36079 5.53686 5.59797 5.64746 5.71247 5.72836 5.75998 5.81930 5.97492 6.22662 6.51007 6.89149 7.44056 7.51582 8.19807 8.23536 8.26808 9.15461 10.77504 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.001837 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.541178 B =15241.783487 C =16981.755538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.688 5.688 5 C 0.148 3.852 6 C -0.023 4.023 7 C -0.027 4.027 8 N -0.279 5.279 9 C 0.102 3.898 10 C 0.103 3.897 11 N -0.649 5.649 12 C 0.570 3.430 13 O -0.501 6.501 14 C -0.146 4.146 15 S -0.057 6.057 16 C -0.538 4.538 17 H 0.074 0.926 18 C 0.075 3.925 19 N -0.866 5.866 20 Si 0.920 3.080 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.272 1.272 24 C 0.101 3.899 25 N -0.077 5.077 26 N -0.265 5.265 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.346 0.654 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.192 0.808 38 H 0.153 0.847 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.270 0.730 44 H 0.096 0.904 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.763 -6.313 17.833 29.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.071 4.071 4 N -0.319 5.319 5 C 0.017 3.983 6 C -0.161 4.161 7 C -0.178 4.178 8 N -0.072 5.072 9 C -0.002 4.002 10 C -0.022 4.022 11 N -0.389 5.389 12 C 0.360 3.640 13 O -0.373 6.373 14 C -0.296 4.296 15 S 0.169 5.831 16 C -0.686 4.686 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.501 5.501 20 Si 0.746 3.254 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.024 4.024 25 N -0.056 5.056 26 N -0.133 5.133 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.209 0.791 38 H 0.170 0.830 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.366 -4.974 18.405 27.897 hybrid contribution -1.719 -1.365 -1.352 2.578 sum -22.084 -6.340 17.052 28.613 Atomic orbital electron populations 1.21730 0.95452 1.01902 1.01850 1.21504 0.95655 0.96242 1.02753 1.22026 0.87009 0.97328 1.00762 1.60512 1.07492 1.13242 1.50692 1.20042 0.85690 0.90531 1.02046 1.21747 0.97261 1.07850 0.89211 1.23363 0.83433 1.08822 1.02171 1.47185 1.07085 1.46453 1.06508 1.23761 0.84734 1.01360 0.90296 1.23242 1.01484 0.94096 0.83386 1.49366 1.36010 1.36845 1.16684 1.20023 0.77946 0.83267 0.82805 1.90755 1.38382 1.29293 1.78822 1.23503 1.07276 1.03163 0.95686 1.85461 1.41002 1.45651 1.10971 1.22839 1.23997 1.20356 1.01387 0.90809 1.24998 0.94366 0.95748 0.98379 1.70009 1.19614 1.30331 1.30186 0.86150 0.77838 0.80190 0.81234 1.20208 1.20677 1.19647 1.23307 0.93369 0.95220 0.90496 1.78350 1.15703 1.19110 0.92452 1.75058 0.95549 1.16539 1.26119 0.92541 0.92478 0.92835 0.90995 0.92125 0.95087 0.90761 0.83583 0.93222 0.89150 0.79120 0.82956 0.88437 0.89159 0.88932 0.88988 0.92062 0.88575 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.12 -0.63 6.19 -26.73 -0.17 -0.80 16 3 C 0.06 0.31 5.69 -3.82 -0.02 0.29 16 4 N -0.69 -4.66 6.49 -115.05 -0.75 -5.40 16 5 C 0.15 0.99 6.25 -4.97 -0.03 0.96 16 6 C -0.02 -0.20 6.76 -82.78 -0.56 -0.76 16 7 C -0.03 -0.20 10.72 -17.04 -0.18 -0.39 16 8 N -0.28 -2.49 3.56 -54.47 -0.19 -2.69 16 9 C 0.10 0.78 5.34 -67.70 -0.36 0.42 16 10 C 0.10 0.98 8.42 -8.50 -0.07 0.91 16 11 N -0.65 -7.88 3.69 -185.03 -0.68 -8.56 16 12 C 0.57 10.04 8.10 -10.98 -0.09 9.95 16 13 O -0.50 -10.99 16.64 5.56 0.09 -10.89 16 14 C -0.15 -2.76 5.98 36.01 0.22 -2.54 16 15 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 16 C -0.54 -14.79 9.50 30.94 0.29 -14.50 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.50 13.22 55.49 0.73 -24.77 16 20 Si 0.92 20.81 29.55 -169.99 -5.02 15.78 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 24 C 0.10 0.76 7.77 -8.44 -0.07 0.70 16 25 N -0.08 -0.91 13.16 60.35 0.79 -0.11 16 26 N -0.27 -3.12 12.41 33.29 0.41 -2.71 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.35 2.52 8.72 -39.29 -0.34 2.17 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.19 0.88 6.78 -52.49 -0.36 0.53 16 38 H 0.15 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 42 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.10 0.54 6.38 -51.93 -0.33 0.21 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -35.27 396.86 -8.53 -43.79 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.92 Total: -2.63 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.77 Total: -4.08 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.32 Total: -44.24 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.27 -8.53 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105170121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.432 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds