Wall clock time and date at job start Tue Mar 31 2020 22:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46963 * 2 1 4 4 N 1.46894 * 109.47405 * 120.00041 * 2 1 3 5 5 C 1.47963 * 111.00323 * 174.99713 * 4 2 1 6 6 C 1.53933 * 86.18297 * 222.41517 * 5 4 2 7 7 N 1.46494 * 113.73030 * 138.07700 * 6 5 4 8 8 C 1.35317 * 125.87155 * 277.22846 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 10 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 10 15 15 S 1.81000 * 109.47389 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99715 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00516 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99710 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00011 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46661 * 60.00586 * 20 18 16 22 22 H 1.48501 * 109.47391 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47355 * 300.00441 * 20 18 16 24 24 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 25 25 N 1.28636 * 108.88627 * 0.25926 * 24 9 8 26 26 C 1.48188 * 111.07097 * 75.56578 * 4 2 1 27 27 H 1.08996 * 109.46759 * 300.00002 * 1 2 3 28 28 H 1.08994 * 109.47025 * 60.00165 * 1 2 3 29 29 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47299 * 239.99947 * 2 1 3 31 31 H 1.08996 * 109.47385 * 60.00381 * 3 2 1 32 32 H 1.09005 * 109.47123 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47015 * 300.00092 * 3 2 1 34 34 H 1.09005 * 113.75367 * 108.09538 * 5 4 2 35 35 H 1.08999 * 113.85810 * 336.75106 * 5 4 2 36 36 H 1.08995 * 113.73588 * 269.25917 * 6 5 4 37 37 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 38 38 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 39 39 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 40 40 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 41 41 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 42 42 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 43 43 H 0.96991 * 119.99795 * 179.97438 * 19 18 16 44 44 H 1.09001 * 113.75994 * 23.24491 * 26 4 2 45 45 H 1.08996 * 113.82687 * 251.80916 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4939 -0.8174 1.1748 6 6 3.2778 -2.2534 1.6855 7 7 4.1430 -3.2446 1.0414 8 6 3.9141 -3.8411 -0.1515 9 6 4.9555 -4.6803 -0.3594 10 6 5.1655 -5.5788 -1.5509 11 7 6.0157 -4.8988 -2.5313 12 6 6.3444 -5.5178 -3.6825 13 8 5.9323 -6.6357 -3.9091 14 6 7.2241 -4.8209 -4.6882 15 16 7.4812 -5.9023 -6.1168 16 6 8.5112 -4.8670 -7.1026 17 1 8.7888 -3.8856 -6.7473 18 6 8.9668 -5.3132 -8.3355 19 7 8.6290 -6.5095 -8.7684 20 14 10.0582 -4.2154 -9.3810 21 1 11.3011 -3.8967 -8.6332 22 1 10.4054 -4.9190 -10.6419 23 1 9.3357 -2.9578 -9.6993 24 7 5.7644 -4.5513 0.6982 25 7 5.2548 -3.6933 1.5099 26 6 1.8724 -2.1608 1.0643 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 4.0014 -0.1689 1.8891 35 1 3.9240 -0.7670 0.1746 36 1 3.2724 -2.3364 2.7723 37 1 3.0692 -3.6815 -0.8050 38 1 4.2022 -5.8115 -2.0048 39 1 5.6481 -6.5017 -1.2295 40 1 6.3456 -4.0049 -2.3500 41 1 6.7438 -3.8981 -5.0133 42 1 8.1856 -4.5883 -4.2305 43 1 8.9471 -6.8211 -9.6300 44 1 1.8256 -2.5043 0.0309 45 1 1.0869 -2.5839 1.6903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107129489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:23 Heat of formation + Delta-G solvation = 100.295296 kcal Electronic energy + Delta-G solvation = -25919.248896 eV Core-core repulsion = 22101.733862 eV Total energy + Delta-G solvation = -3817.515033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.75036 -40.89643 -39.10075 -35.71342 -34.82748 -33.08246 -32.41685 -31.73763 -29.46531 -28.45744 -27.78234 -26.54279 -26.09217 -25.39514 -23.57685 -21.90784 -20.99579 -20.53439 -20.38935 -18.23466 -17.74144 -17.20277 -16.65196 -16.31000 -15.84623 -15.61664 -15.28065 -15.14508 -14.92172 -14.79298 -14.65597 -13.90991 -13.74343 -13.64143 -13.20470 -13.06231 -12.95258 -12.85237 -12.65767 -12.55455 -12.28437 -12.13762 -11.94328 -11.75048 -11.49848 -11.47227 -11.11248 -11.03508 -11.02945 -10.76925 -10.45732 -9.87007 -9.79493 -9.72073 -9.28827 -9.05409 -8.91062 -8.22827 -6.48576 -6.20397 -3.90846 1.12670 1.74335 2.05451 2.95883 3.09484 3.11772 3.24276 3.27250 3.28840 3.35327 3.69807 3.83211 4.00729 4.09605 4.11686 4.21628 4.28495 4.39505 4.48187 4.62241 4.69512 4.76573 4.87978 4.94196 5.05682 5.10203 5.13690 5.14558 5.16022 5.23286 5.25660 5.34207 5.46958 5.62299 5.68784 5.69046 5.70427 5.83147 5.91196 6.13643 6.14788 6.15886 6.55145 7.60435 7.69107 8.15247 8.36226 8.59894 9.24746 10.86962 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.002009 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.556119 B =13935.524007 C =15162.753685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 C -0.147 4.147 4 N -0.466 5.466 5 C 0.001 3.999 6 C 0.112 3.888 7 N -0.286 5.286 8 C -0.033 4.033 9 C -0.031 4.031 10 C 0.209 3.791 11 N -0.734 5.734 12 C 0.534 3.466 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 N -0.250 5.250 25 N -0.079 5.079 26 C 0.000 4.000 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.190 0.810 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.087 0.913 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.660 15.314 22.469 32.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C -0.205 4.205 4 N -0.190 5.190 5 C -0.128 4.128 6 C 0.010 3.990 7 N -0.079 5.079 8 C -0.185 4.185 9 C -0.169 4.169 10 C 0.084 3.916 11 N -0.389 5.389 12 C 0.321 3.679 13 O -0.390 6.390 14 C -0.303 4.303 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 N -0.117 5.117 25 N -0.058 5.058 26 C -0.129 4.129 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.163 0.837 37 H 0.207 0.793 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.684 13.730 23.649 32.566 hybrid contribution 0.812 2.178 -1.809 2.946 sum -16.871 15.908 21.840 31.855 Atomic orbital electron populations 1.21775 0.93350 1.02248 1.02680 1.22247 0.96973 0.96215 0.91102 1.21837 1.01133 0.94681 1.02828 1.68701 1.07334 1.06482 1.36490 1.24428 0.91633 0.94157 1.02608 1.23886 0.88754 0.85983 1.00396 1.47468 1.16727 1.29327 1.14415 1.23339 1.04090 0.99978 0.91079 1.22003 0.94005 1.02449 0.98447 1.19322 0.96267 0.93035 0.83003 1.46003 1.53661 1.20293 1.18976 1.20296 0.80262 0.86161 0.81219 1.90711 1.53034 1.18721 1.76564 1.23527 1.01071 1.04607 1.01125 1.85384 1.65466 1.21391 1.10950 1.22829 1.35771 1.04016 1.05808 0.90997 1.24991 0.96254 0.95513 0.96826 1.70006 1.43102 1.17068 1.20102 0.86228 0.80285 0.79961 0.79043 1.19928 1.20812 1.19986 1.75169 1.24023 1.11177 1.01344 1.78374 0.96009 1.09817 1.21564 1.24525 0.95492 0.91034 1.01893 0.91549 0.91757 0.92582 0.92968 0.91497 0.92547 0.91627 0.87226 0.89874 0.83702 0.79308 0.89690 0.89545 0.76778 0.89274 0.89129 0.92132 0.89542 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 9.32 37.16 0.35 -0.20 16 2 C 0.04 0.19 2.27 -67.72 -0.15 0.03 16 3 C -0.15 -0.63 9.18 37.16 0.34 -0.28 16 4 N -0.47 -2.01 5.98 -230.21 -1.38 -3.39 16 5 C 0.00 0.01 6.64 -2.76 -0.02 -0.01 16 6 C 0.11 0.55 5.13 -69.62 -0.36 0.19 16 7 N -0.29 -2.31 3.54 -55.90 -0.20 -2.51 16 8 C -0.03 -0.27 10.72 -17.04 -0.18 -0.45 16 9 C -0.03 -0.34 6.61 -82.78 -0.55 -0.89 16 10 C 0.21 2.54 6.23 -5.19 -0.03 2.50 16 11 N -0.73 -10.09 5.55 -61.47 -0.34 -10.43 16 12 C 0.53 9.94 7.85 -10.98 -0.09 9.85 16 13 O -0.52 -11.58 15.86 5.55 0.09 -11.49 16 14 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 15 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 16 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 20 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 N -0.25 -3.31 12.41 33.29 0.41 -2.90 16 25 N -0.08 -0.92 13.17 60.35 0.79 -0.13 16 26 C 0.00 0.00 6.75 -2.63 -0.02 -0.02 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.20 7.73 -51.93 -0.40 -0.20 16 30 H 0.05 0.24 7.69 -51.93 -0.40 -0.16 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.25 7.33 -51.93 -0.38 -0.13 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.43 7.85 -51.93 -0.41 0.02 16 36 H 0.15 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.19 0.89 6.74 -52.49 -0.35 0.53 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.40 4.67 8.46 -40.82 -0.35 4.33 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.09 0.25 5.88 -51.93 -0.31 -0.05 16 45 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -36.09 390.38 -8.31 -44.41 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.79 Total: -1.48 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.29 Total: -5.13 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.03 Total: -44.80 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.09 -8.31 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107129489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.700 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds