Wall clock time and date at job start Tue Mar 31 2020 22:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46963 * 2 1 4 4 N 1.46894 * 109.47405 * 120.00041 * 2 1 3 5 5 C 1.47963 * 111.00323 * 174.99713 * 4 2 1 6 6 C 1.53933 * 86.18297 * 222.41517 * 5 4 2 7 7 N 1.46494 * 113.73030 * 138.07700 * 6 5 4 8 8 C 1.35317 * 125.87155 * 277.22846 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 10 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 10 15 15 S 1.81000 * 109.47389 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99715 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00516 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99710 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00011 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46661 * 60.00586 * 20 18 16 22 22 H 1.48501 * 109.47391 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47355 * 300.00441 * 20 18 16 24 24 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 25 25 N 1.28636 * 108.88627 * 0.25926 * 24 9 8 26 26 C 1.48188 * 111.07097 * 75.56578 * 4 2 1 27 27 H 1.08996 * 109.46759 * 300.00002 * 1 2 3 28 28 H 1.08994 * 109.47025 * 60.00165 * 1 2 3 29 29 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47299 * 239.99947 * 2 1 3 31 31 H 1.08996 * 109.47385 * 60.00381 * 3 2 1 32 32 H 1.09005 * 109.47123 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47015 * 300.00092 * 3 2 1 34 34 H 1.09005 * 113.75367 * 108.09538 * 5 4 2 35 35 H 1.08999 * 113.85810 * 336.75106 * 5 4 2 36 36 H 1.08995 * 113.73588 * 269.25917 * 6 5 4 37 37 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 38 38 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 39 39 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 40 40 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 41 41 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 42 42 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 43 43 H 0.96991 * 119.99795 * 179.97438 * 19 18 16 44 44 H 1.09001 * 113.75994 * 23.24491 * 26 4 2 45 45 H 1.08996 * 113.82687 * 251.80916 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4939 -0.8174 1.1748 6 6 3.2778 -2.2534 1.6855 7 7 4.1430 -3.2446 1.0414 8 6 3.9141 -3.8411 -0.1515 9 6 4.9555 -4.6803 -0.3594 10 6 5.1655 -5.5788 -1.5509 11 7 6.0157 -4.8988 -2.5313 12 6 6.3444 -5.5178 -3.6825 13 8 5.9323 -6.6357 -3.9091 14 6 7.2241 -4.8209 -4.6882 15 16 7.4812 -5.9023 -6.1168 16 6 8.5112 -4.8670 -7.1026 17 1 8.7888 -3.8856 -6.7473 18 6 8.9668 -5.3132 -8.3355 19 7 8.6290 -6.5095 -8.7684 20 14 10.0582 -4.2154 -9.3810 21 1 11.3011 -3.8967 -8.6332 22 1 10.4054 -4.9190 -10.6419 23 1 9.3357 -2.9578 -9.6993 24 7 5.7644 -4.5513 0.6982 25 7 5.2548 -3.6933 1.5099 26 6 1.8724 -2.1608 1.0643 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 4.0014 -0.1689 1.8891 35 1 3.9240 -0.7670 0.1746 36 1 3.2724 -2.3364 2.7723 37 1 3.0692 -3.6815 -0.8050 38 1 4.2022 -5.8115 -2.0048 39 1 5.6481 -6.5017 -1.2295 40 1 6.3456 -4.0049 -2.3500 41 1 6.7438 -3.8981 -5.0133 42 1 8.1856 -4.5883 -4.2305 43 1 8.9471 -6.8211 -9.6300 44 1 1.8256 -2.5043 0.0309 45 1 1.0869 -2.5839 1.6903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107129489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:22 Heat of formation + Delta-G solvation = 71.987008 kcal Electronic energy + Delta-G solvation = -25920.476435 eV Core-core repulsion = 22101.733862 eV Total energy + Delta-G solvation = -3818.742573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.48176 -41.27507 -40.54838 -36.49166 -35.70380 -34.57078 -33.73761 -32.72647 -30.86419 -28.77475 -28.27231 -27.75927 -27.20037 -26.58839 -24.17511 -22.67125 -21.82156 -21.50990 -20.90217 -19.88156 -18.65186 -17.89847 -17.63203 -17.39571 -16.86778 -16.81424 -16.64410 -16.11402 -15.79177 -15.62602 -15.30164 -15.26842 -14.84441 -14.53898 -14.41307 -14.03939 -13.96967 -13.36497 -13.35111 -13.25463 -13.15705 -12.96518 -12.86067 -12.76221 -12.67165 -12.60513 -12.44815 -11.94694 -11.81782 -11.74388 -11.70808 -11.19417 -11.11819 -11.01644 -10.38090 -10.26168 -10.16905 -10.03411 -8.64745 -8.33251 -6.10990 0.44651 1.09115 1.20352 1.33265 1.44530 1.49848 1.60690 1.61638 2.28276 2.43835 2.63246 2.87295 3.00606 3.17088 3.33737 3.47762 3.63263 3.78108 3.79575 3.94843 3.97741 4.01446 4.21786 4.28695 4.31110 4.37509 4.44626 4.52511 4.57155 4.60896 4.68339 4.76257 4.83642 4.85669 4.92406 4.93624 4.97841 5.04105 5.32363 5.33398 5.39650 5.42933 5.53257 5.83410 6.20914 6.44450 7.07899 7.20222 7.37126 8.75623 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.002009 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.556119 B =13935.524007 C =15162.753685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 C -0.146 4.146 4 N -0.471 5.471 5 C 0.004 3.996 6 C 0.105 3.895 7 N -0.274 5.274 8 C -0.008 4.008 9 C -0.048 4.048 10 C 0.213 3.787 11 N -0.709 5.709 12 C 0.539 3.461 13 O -0.560 6.560 14 C -0.130 4.130 15 S -0.146 6.146 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.910 5.910 20 Si 0.998 3.002 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.261 1.261 24 N -0.289 5.289 25 N -0.104 5.104 26 C 0.007 3.993 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.152 0.848 37 H 0.227 0.773 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.412 0.588 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.097 0.903 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.599 17.711 22.971 34.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.204 4.204 4 N -0.195 5.195 5 C -0.125 4.125 6 C 0.004 3.996 7 N -0.067 5.067 8 C -0.161 4.161 9 C -0.187 4.187 10 C 0.088 3.912 11 N -0.363 5.363 12 C 0.325 3.675 13 O -0.438 6.438 14 C -0.281 4.281 15 S 0.081 5.919 16 C -0.695 4.695 17 H 0.100 0.900 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.186 1.186 24 N -0.155 5.155 25 N -0.083 5.083 26 C -0.122 4.122 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.170 0.830 37 H 0.244 0.756 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.248 0.752 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.629 16.181 24.223 34.578 hybrid contribution 0.992 1.510 -1.806 2.555 sum -17.637 17.691 22.417 33.564 Atomic orbital electron populations 1.21756 0.93007 1.02500 1.02572 1.22269 0.97215 0.96077 0.91063 1.21827 1.00892 0.94902 1.02785 1.68734 1.06998 1.07120 1.36630 1.24406 0.91924 0.93772 1.02418 1.24234 0.89105 0.85362 1.00890 1.47734 1.15908 1.28807 1.14249 1.23782 1.03698 0.97810 0.90803 1.21832 0.95212 1.03726 0.97925 1.19325 0.96260 0.92529 0.83061 1.45748 1.52629 1.20465 1.17503 1.19976 0.79928 0.85504 0.82088 1.90702 1.54883 1.20541 1.77692 1.23366 1.02615 1.03634 0.98482 1.85541 1.65997 1.25228 1.15153 1.23173 1.35798 1.04302 1.06269 0.89995 1.26119 0.97718 0.97039 0.98274 1.70172 1.44584 1.19216 1.20694 0.85019 0.78204 0.77953 0.76909 1.18848 1.20378 1.18570 1.75115 1.25603 1.12368 1.02451 1.78313 0.97539 1.10438 1.21999 1.24613 0.94601 0.90389 1.02619 0.92086 0.91475 0.92132 0.92801 0.91924 0.92883 0.91316 0.87031 0.90249 0.83012 0.75649 0.88036 0.91287 0.75239 0.86954 0.87657 0.91985 0.88463 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.32 71.98 0.67 -0.11 16 2 C 0.04 0.27 2.27 44.92 0.10 0.37 16 3 C -0.15 -1.02 9.18 71.98 0.66 -0.36 16 4 N -0.47 -2.93 5.98 -882.25 -5.27 -8.20 16 5 C 0.00 0.03 6.64 86.41 0.57 0.60 16 6 C 0.11 0.77 5.13 46.56 0.24 1.01 16 7 N -0.27 -3.83 3.54 -330.76 -1.17 -5.00 16 8 C -0.01 -0.11 10.72 83.49 0.89 0.79 16 9 C -0.05 -0.97 6.61 41.60 0.28 -0.70 16 10 C 0.21 4.90 6.23 85.63 0.53 5.43 16 11 N -0.71 -18.37 5.55 -466.79 -2.59 -20.96 16 12 C 0.54 19.67 7.85 87.66 0.69 20.36 16 13 O -0.56 -25.41 15.86 -3.04 -0.05 -25.45 16 14 C -0.13 -5.12 6.16 71.24 0.44 -4.69 16 15 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 16 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 17 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 20 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 N -0.29 -7.46 12.41 -48.60 -0.60 -8.06 16 25 N -0.10 -2.33 13.17 37.02 0.49 -1.84 16 26 C 0.01 0.03 6.75 86.37 0.58 0.61 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.28 7.73 -2.39 -0.02 0.27 16 30 H 0.05 0.33 7.69 -2.38 -0.02 0.32 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.40 7.33 -2.38 -0.02 0.38 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 0.73 8.14 -2.38 -0.02 0.72 16 35 H 0.08 0.64 7.85 -2.39 -0.02 0.62 16 36 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.23 1.09 6.74 -2.91 -0.02 1.07 16 38 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.41 8.71 8.46 -92.71 -0.78 7.92 16 41 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 42 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 43 H 0.27 15.48 8.31 -92.72 -0.77 14.71 16 44 H 0.10 0.17 5.88 -2.39 -0.01 0.16 16 45 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -80.54 390.38 -1.05 -81.59 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.22 Total: 13.26 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 6.77 Total: -6.07 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -8.86 Total: -99.65 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.05 Total: -25.45 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -80.54 -1.05 -81.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107129489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.580 kcal (2) G-P(sol) polarization free energy of solvation -80.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds