Wall clock time and date at job start Tue Mar 31 2020 23:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.45726 * 2 1 4 4 C 1.53042 * 109.44875 * 119.96914 * 2 1 3 5 5 C 1.53184 * 109.31064 * 181.37906 * 4 2 1 6 6 N 1.46931 * 108.77710 * 305.36594 * 5 4 2 7 7 C 1.34772 * 120.63014 * 233.63185 * 6 5 4 8 8 O 1.21701 * 120.00148 * 171.25573 * 7 6 5 9 9 C 1.46674 * 120.00232 * 351.25809 * 7 6 5 10 10 C 1.37889 * 126.22069 * 332.10830 * 9 7 6 11 11 C 1.39887 * 107.09811 * 179.85016 * 10 9 7 12 12 Cl 1.73600 * 126.07856 * 180.12810 * 11 10 9 13 13 C 1.35519 * 107.85044 * 0.41464 * 11 10 9 14 14 N 1.35634 * 108.84956 * 359.74462 * 13 11 10 15 15 C 1.46501 * 125.67593 * 179.97438 * 14 13 11 16 16 C 1.46926 * 118.73912 * 53.60580 * 6 5 4 17 17 C 1.53033 * 109.45900 * 240.03183 * 2 1 3 18 18 H 1.09007 * 109.50025 * 298.58203 * 17 2 1 19 19 C 1.53005 * 109.52871 * 58.65988 * 17 2 1 20 20 N 1.46493 * 109.47717 * 184.85547 * 19 17 2 21 21 C 1.36929 * 120.00462 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99921 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00086 * 179.97438 * 21 20 19 24 24 N 1.31612 * 120.00324 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99710 * 179.97438 * 23 21 20 26 26 H 1.48490 * 109.47064 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46776 * 120.00134 * 25 23 21 28 28 H 1.48503 * 109.46903 * 239.99996 * 25 23 21 29 29 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47015 * 299.96911 * 1 2 3 31 31 H 1.09000 * 109.47368 * 59.97048 * 1 2 3 32 32 H 1.09003 * 109.49588 * 301.33046 * 4 2 1 33 33 H 1.08998 * 109.49545 * 61.42719 * 4 2 1 34 34 H 1.09004 * 109.59181 * 65.15019 * 5 4 2 35 35 H 1.09001 * 109.58620 * 185.43447 * 5 4 2 36 36 H 1.08006 * 126.45414 * 0.02562 * 10 9 7 37 37 H 1.07993 * 125.57859 * 179.71776 * 13 11 10 38 38 H 1.09004 * 109.46845 * 264.58553 * 15 14 13 39 39 H 1.08992 * 109.46813 * 24.58939 * 15 14 13 40 40 H 1.09007 * 109.46833 * 144.58818 * 15 14 13 41 41 H 1.08998 * 109.58663 * 186.60259 * 16 6 5 42 42 H 1.09008 * 109.57966 * 66.18497 * 16 6 5 43 43 H 1.09001 * 109.46559 * 304.85822 * 19 17 2 44 44 H 1.09002 * 109.47032 * 64.84708 * 19 17 2 45 45 H 0.97007 * 119.99767 * 359.97438 * 20 19 17 46 46 H 0.97001 * 120.00604 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 3.5711 -0.6890 1.2644 6 7 4.0676 -1.2493 0.0002 7 6 4.9610 -2.2584 0.0003 8 8 5.2446 -2.8200 -1.0415 9 6 5.5913 -2.6798 1.2558 10 6 5.8180 -1.8859 2.3602 11 6 6.4338 -2.6900 3.3252 12 17 6.9323 -2.1852 4.9096 13 6 6.5777 -3.9314 2.8012 14 7 6.0695 -3.9379 1.5437 15 6 6.0356 -5.0919 0.6418 16 6 3.5713 -0.6889 -1.2641 17 6 2.0398 -0.7208 -1.2500 18 1 1.6975 -1.7556 -1.2384 19 6 1.5030 -0.0195 -2.4995 20 7 1.8952 -0.7763 -3.6909 21 6 1.5254 -0.3367 -4.9338 22 1 0.9443 0.5679 -5.0358 23 6 1.8975 -1.0536 -6.0627 24 7 2.6053 -2.1562 -5.9385 25 14 1.3923 -0.4541 -7.7584 26 1 0.6072 0.7994 -7.6266 27 1 2.6063 -0.1939 -8.5733 28 1 0.5627 -1.4910 -8.4231 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 1.6569 -0.2207 2.1399 33 1 1.6973 -1.7557 1.2383 34 1 3.9142 0.3405 1.3676 35 1 3.9411 -1.2829 2.1001 36 1 5.5651 -0.8409 2.4623 37 1 7.0245 -4.7772 3.3026 38 1 6.9002 -5.0602 -0.0213 39 1 6.0599 -6.0111 1.2269 40 1 5.1215 -5.0627 0.0486 41 1 3.9416 -1.2849 -2.0982 42 1 3.9145 0.3406 -1.3671 43 1 0.4158 0.0362 -2.4459 44 1 1.9160 0.9877 -2.5565 45 1 2.4175 -1.5886 -3.5993 46 1 2.8656 -2.6570 -6.7273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132967308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:14 Heat of formation + Delta-G solvation = 22.444218 kcal Electronic energy + Delta-G solvation = -27808.537481 eV Core-core repulsion = 23953.310115 eV Total energy + Delta-G solvation = -3855.227367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80583 -39.80717 -37.79357 -36.61556 -35.10977 -33.83442 -32.86981 -31.90201 -30.22082 -29.47514 -27.99619 -26.74989 -25.56107 -23.96376 -23.20820 -21.72912 -21.20840 -21.01752 -19.78985 -19.14290 -17.46078 -17.00381 -16.42945 -15.89552 -15.71288 -14.97220 -14.84045 -14.44240 -14.40170 -14.14298 -13.86270 -13.79144 -13.44831 -13.36172 -13.10536 -13.04316 -12.84872 -12.62351 -12.52285 -12.50099 -11.87936 -11.70848 -11.65957 -11.42141 -11.06340 -10.97745 -10.87402 -10.78651 -10.59600 -10.26307 -10.15189 -9.98323 -9.78892 -9.57775 -8.86778 -8.83975 -8.61572 -8.37258 -6.86459 -5.70540 -2.99895 1.27887 1.86786 2.19852 2.52987 3.14858 3.24001 3.46291 3.51441 3.54040 4.37363 4.55176 4.61072 4.63370 4.76581 4.88464 4.92570 4.95324 5.04725 5.16625 5.28654 5.30757 5.40615 5.47217 5.58542 5.62868 5.66702 5.70542 5.75206 5.83486 5.94981 5.97539 6.04106 6.16635 6.19176 6.24651 6.34624 6.46955 6.50956 6.56518 6.64242 6.76969 6.82756 6.91029 7.43752 7.74676 8.17586 8.47253 9.58407 10.16740 10.50822 11.51841 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.002806 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.379816 B = 9975.267294 C =11296.402207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.089 3.911 6 N -0.596 5.596 7 C 0.582 3.418 8 O -0.530 6.530 9 C -0.022 4.022 10 C -0.140 4.140 11 C -0.122 4.122 12 Cl -0.053 7.053 13 C 0.026 3.974 14 N -0.403 5.403 15 C 0.072 3.928 16 C 0.122 3.878 17 C -0.101 4.101 18 H 0.074 0.926 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.158 0.842 37 H 0.177 0.823 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.019 0.981 45 H 0.385 0.615 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.542 -1.529 24.228 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.033 4.033 6 N -0.328 5.328 7 C 0.369 3.631 8 O -0.407 6.407 9 C -0.137 4.137 10 C -0.166 4.166 11 C -0.155 4.155 12 Cl -0.024 7.024 13 C -0.110 4.110 14 N -0.076 5.076 15 C -0.069 4.069 16 C 0.001 3.999 17 C -0.120 4.120 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.176 0.824 37 H 0.194 0.806 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.036 0.964 45 H 0.219 0.781 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.635 -1.991 23.378 24.129 hybrid contribution 0.010 0.058 -0.733 0.735 sum 5.645 -1.933 22.645 23.418 Atomic orbital electron populations 1.21880 0.94974 1.01931 1.01703 1.21107 0.95984 0.99392 0.93947 0.91008 1.21982 0.94612 1.01548 0.98435 1.22290 0.94908 0.99537 0.86607 1.47834 1.41828 1.34903 1.08244 1.16951 0.79386 0.80211 0.86529 1.90906 1.62755 1.54172 1.32874 1.20189 1.10169 0.85999 0.97312 1.21354 1.04094 1.00013 0.91121 1.19891 1.11349 0.94755 0.89527 1.98322 1.90425 1.91007 1.22656 1.21678 1.04815 0.98917 0.85618 1.43827 1.42559 1.09226 1.11972 1.22266 1.05755 0.85363 0.93495 1.21798 0.93919 0.99074 0.85118 1.21706 0.94301 1.00797 0.95228 0.90790 1.20726 0.96860 0.94045 0.85313 1.42428 1.65269 1.29275 1.00817 1.19241 1.27710 1.06354 0.83763 0.91200 1.24751 1.00889 0.97552 0.97798 1.69681 1.42419 1.17361 1.28350 0.86147 0.77624 0.77711 0.84883 1.20601 1.21909 1.21940 0.92827 0.93204 0.91642 0.90739 0.91584 0.91178 0.88234 0.82411 0.80592 0.89565 0.89387 0.88638 0.87688 0.91300 0.95483 0.96353 0.78133 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.81 37.16 0.33 -1.40 16 2 C -0.09 -1.04 2.23 -90.58 -0.20 -1.24 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -1.30 5.36 -26.61 -0.14 -1.44 16 5 C 0.09 0.92 5.09 -3.71 -0.02 0.90 16 6 N -0.60 -8.41 2.97 -174.31 -0.52 -8.93 16 7 C 0.58 9.11 7.42 -12.86 -0.10 9.02 16 8 O -0.53 -10.36 15.12 5.19 0.08 -10.29 16 9 C -0.02 -0.28 6.33 -81.98 -0.52 -0.80 16 10 C -0.14 -1.51 8.43 -39.09 -0.33 -1.84 16 11 C -0.12 -1.23 6.66 -39.94 -0.27 -1.49 16 12 Cl -0.05 -0.47 29.30 -51.86 -1.52 -1.99 16 13 C 0.03 0.24 11.35 -16.84 -0.19 0.05 16 14 N -0.40 -4.40 3.16 -120.19 -0.38 -4.78 16 15 C 0.07 0.66 10.30 59.85 0.62 1.27 16 16 C 0.12 2.03 5.53 -3.71 -0.02 2.01 16 17 C -0.10 -1.62 1.92 -90.50 -0.17 -1.79 16 18 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 19 C 0.16 3.13 5.41 -4.04 -0.02 3.11 16 20 N -0.73 -18.75 5.38 -59.91 -0.32 -19.07 16 21 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 25 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.84 6.30 -51.93 -0.33 0.51 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.94 4.36 -51.93 -0.23 0.71 16 36 H 0.16 1.46 6.41 -52.48 -0.34 1.12 16 37 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.50 8.12 -51.93 -0.42 0.07 16 40 H 0.09 1.05 7.44 -51.92 -0.39 0.66 16 41 H 0.10 2.18 6.20 -51.93 -0.32 1.86 16 42 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 43 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.38 10.55 6.89 -40.82 -0.28 10.27 16 46 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -33.69 377.68 -9.37 -43.06 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.82 Total: 7.75 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.28 Total: -1.07 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.50 Total: -60.89 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.52 Total: -1.99 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.69 -9.37 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132967308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.499 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds