Wall clock time and date at job start Tue Mar 31 2020 23:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.45726 * 2 1 4 4 C 1.53042 * 109.44875 * 119.96914 * 2 1 3 5 5 C 1.53184 * 109.31064 * 181.37906 * 4 2 1 6 6 N 1.46931 * 108.77710 * 305.36594 * 5 4 2 7 7 C 1.34772 * 120.63014 * 233.63185 * 6 5 4 8 8 O 1.21701 * 120.00148 * 171.25573 * 7 6 5 9 9 C 1.46674 * 120.00232 * 351.25809 * 7 6 5 10 10 C 1.37889 * 126.22069 * 332.10830 * 9 7 6 11 11 C 1.39887 * 107.09811 * 179.85016 * 10 9 7 12 12 Cl 1.73600 * 126.07856 * 180.12810 * 11 10 9 13 13 C 1.35519 * 107.85044 * 0.41464 * 11 10 9 14 14 N 1.35634 * 108.84956 * 359.74462 * 13 11 10 15 15 C 1.46501 * 125.67593 * 179.97438 * 14 13 11 16 16 C 1.46926 * 118.73912 * 53.60580 * 6 5 4 17 17 C 1.53033 * 109.45900 * 240.03183 * 2 1 3 18 18 H 1.09007 * 109.50025 * 298.58203 * 17 2 1 19 19 C 1.53005 * 109.52871 * 58.65988 * 17 2 1 20 20 N 1.46493 * 109.47717 * 184.85547 * 19 17 2 21 21 C 1.36929 * 120.00462 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99921 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00086 * 179.97438 * 21 20 19 24 24 N 1.31612 * 120.00324 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99710 * 179.97438 * 23 21 20 26 26 H 1.48490 * 109.47064 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46776 * 120.00134 * 25 23 21 28 28 H 1.48503 * 109.46903 * 239.99996 * 25 23 21 29 29 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47015 * 299.96911 * 1 2 3 31 31 H 1.09000 * 109.47368 * 59.97048 * 1 2 3 32 32 H 1.09003 * 109.49588 * 301.33046 * 4 2 1 33 33 H 1.08998 * 109.49545 * 61.42719 * 4 2 1 34 34 H 1.09004 * 109.59181 * 65.15019 * 5 4 2 35 35 H 1.09001 * 109.58620 * 185.43447 * 5 4 2 36 36 H 1.08006 * 126.45414 * 0.02562 * 10 9 7 37 37 H 1.07993 * 125.57859 * 179.71776 * 13 11 10 38 38 H 1.09004 * 109.46845 * 264.58553 * 15 14 13 39 39 H 1.08992 * 109.46813 * 24.58939 * 15 14 13 40 40 H 1.09007 * 109.46833 * 144.58818 * 15 14 13 41 41 H 1.08998 * 109.58663 * 186.60259 * 16 6 5 42 42 H 1.09008 * 109.57966 * 66.18497 * 16 6 5 43 43 H 1.09001 * 109.46559 * 304.85822 * 19 17 2 44 44 H 1.09002 * 109.47032 * 64.84708 * 19 17 2 45 45 H 0.97007 * 119.99767 * 359.97438 * 20 19 17 46 46 H 0.97001 * 120.00604 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 6 3.5711 -0.6890 1.2644 6 7 4.0676 -1.2493 0.0002 7 6 4.9610 -2.2584 0.0003 8 8 5.2446 -2.8200 -1.0415 9 6 5.5913 -2.6798 1.2558 10 6 5.8180 -1.8859 2.3602 11 6 6.4338 -2.6900 3.3252 12 17 6.9323 -2.1852 4.9096 13 6 6.5777 -3.9314 2.8012 14 7 6.0695 -3.9379 1.5437 15 6 6.0356 -5.0919 0.6418 16 6 3.5713 -0.6889 -1.2641 17 6 2.0398 -0.7208 -1.2500 18 1 1.6975 -1.7556 -1.2384 19 6 1.5030 -0.0195 -2.4995 20 7 1.8952 -0.7763 -3.6909 21 6 1.5254 -0.3367 -4.9338 22 1 0.9443 0.5679 -5.0358 23 6 1.8975 -1.0536 -6.0627 24 7 2.6053 -2.1562 -5.9385 25 14 1.3923 -0.4541 -7.7584 26 1 0.6072 0.7994 -7.6266 27 1 2.6063 -0.1939 -8.5733 28 1 0.5627 -1.4910 -8.4231 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 1.6569 -0.2207 2.1399 33 1 1.6973 -1.7557 1.2383 34 1 3.9142 0.3405 1.3676 35 1 3.9411 -1.2829 2.1001 36 1 5.5651 -0.8409 2.4623 37 1 7.0245 -4.7772 3.3026 38 1 6.9002 -5.0602 -0.0213 39 1 6.0599 -6.0111 1.2269 40 1 5.1215 -5.0627 0.0486 41 1 3.9416 -1.2849 -2.0982 42 1 3.9145 0.3406 -1.3671 43 1 0.4158 0.0362 -2.4459 44 1 1.9160 0.9877 -2.5565 45 1 2.4175 -1.5886 -3.5993 46 1 2.8656 -2.6570 -6.7273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132967308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:13 Heat of formation + Delta-G solvation = 1.540717 kcal Electronic energy + Delta-G solvation = -27809.443925 eV Core-core repulsion = 23953.310115 eV Total energy + Delta-G solvation = -3856.133810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.67777 -40.92499 -39.03904 -37.33828 -36.69267 -35.25605 -33.71345 -33.53381 -31.72854 -30.56165 -29.11225 -27.52500 -27.19599 -25.15643 -24.81953 -22.73831 -22.59791 -21.85143 -20.98374 -20.10945 -19.14887 -18.34058 -17.56052 -16.87918 -16.77530 -16.70634 -15.97238 -15.59750 -15.47992 -15.34603 -15.22190 -14.95724 -14.79376 -14.35277 -14.26748 -14.18414 -13.98237 -13.85170 -13.73020 -13.28761 -13.05734 -13.01594 -12.80407 -12.65878 -12.56697 -12.40653 -12.14874 -11.98838 -11.90622 -11.80808 -11.76451 -11.35875 -11.20210 -11.01103 -10.90406 -9.76528 -9.67436 -9.23549 -8.99599 -7.94667 -5.24667 0.35132 1.11152 1.41825 1.44849 1.46661 1.56768 1.60279 2.08792 2.27196 2.54987 3.38410 3.40361 3.67735 3.81265 3.84586 3.87015 3.99717 4.05189 4.19823 4.21002 4.27733 4.29501 4.41611 4.52279 4.56438 4.59674 4.65333 4.75880 4.79635 4.84419 4.85424 4.94441 4.97193 5.08312 5.13311 5.23894 5.25675 5.37562 5.45083 5.48878 5.53578 5.58528 5.68907 6.00577 6.26096 6.32796 7.01731 7.31563 8.08480 8.30431 9.29028 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.002806 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.379816 B = 9975.267294 C =11296.402207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.088 0.912 4 C -0.121 4.121 5 C 0.085 3.915 6 N -0.593 5.593 7 C 0.575 3.425 8 O -0.587 6.587 9 C -0.058 4.058 10 C -0.123 4.123 11 C -0.137 4.137 12 Cl -0.041 7.041 13 C 0.047 3.953 14 N -0.410 5.410 15 C 0.072 3.928 16 C 0.130 3.870 17 C -0.087 4.087 18 H 0.047 0.953 19 C 0.157 3.843 20 N -0.748 5.748 21 C -0.242 4.242 22 H 0.079 0.921 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.262 1.262 27 H -0.295 1.295 28 H -0.294 1.294 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.174 0.826 37 H 0.212 0.788 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.034 0.966 44 H 0.026 0.974 45 H 0.370 0.630 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.216 -0.143 27.457 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.159 4.159 5 C -0.035 4.035 6 N -0.324 5.324 7 C 0.365 3.635 8 O -0.469 6.469 9 C -0.172 4.172 10 C -0.149 4.149 11 C -0.170 4.170 12 Cl -0.012 7.012 13 C -0.090 4.090 14 N -0.083 5.083 15 C -0.069 4.069 16 C 0.007 3.993 17 C -0.107 4.107 18 H 0.066 0.934 19 C 0.031 3.969 20 N -0.391 5.391 21 C -0.373 4.373 22 H 0.097 0.903 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.221 1.221 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.191 0.809 37 H 0.229 0.771 38 H 0.098 0.902 39 H 0.147 0.853 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.201 0.799 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.263 -0.540 26.669 27.188 hybrid contribution 0.134 -0.360 -1.605 1.650 sum 5.397 -0.900 25.064 25.654 Atomic orbital electron populations 1.21855 0.94309 1.01583 1.02475 1.21102 0.96452 0.99759 0.92444 0.89411 1.21974 0.94237 1.00998 0.98651 1.22619 0.95125 1.00905 0.84885 1.47886 1.41302 1.34522 1.08672 1.17470 0.79193 0.79821 0.87056 1.90868 1.64756 1.56129 1.35106 1.19841 1.12896 0.87666 0.96771 1.21550 1.02612 1.00524 0.90259 1.19981 1.11894 0.95017 0.90092 1.98329 1.90312 1.90953 1.21633 1.22304 1.02457 0.99773 0.84443 1.44021 1.42533 1.08957 1.12760 1.22320 1.04050 0.86596 0.93901 1.21459 0.94231 0.98418 0.85152 1.21549 0.93768 0.99454 0.95879 0.93422 1.20921 0.97196 0.93928 0.84887 1.42692 1.65074 1.29282 1.02026 1.19697 1.26551 1.06152 0.84948 0.90263 1.25647 1.01690 0.98027 1.01901 1.69871 1.44416 1.19015 1.29000 0.85039 0.77063 0.77694 0.79760 1.18603 1.22210 1.22085 0.93770 0.90159 0.93092 0.86946 0.92846 0.88644 0.86822 0.80865 0.77085 0.90228 0.85313 0.91402 0.92848 0.90473 0.94837 0.95648 0.79857 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.81 71.98 0.63 -2.45 16 2 C -0.08 -1.76 2.23 -10.77 -0.02 -1.78 16 3 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.12 -2.12 5.36 30.67 0.16 -1.96 16 5 C 0.09 1.57 5.09 86.36 0.44 2.01 16 6 N -0.59 -17.08 2.97 -823.61 -2.45 -19.53 16 7 C 0.57 19.00 7.42 86.45 0.64 19.64 16 8 O -0.59 -25.23 15.12 -4.35 -0.07 -25.30 16 9 C -0.06 -1.47 6.33 40.35 0.26 -1.22 16 10 C -0.12 -2.41 8.43 22.59 0.19 -2.22 16 11 C -0.14 -2.38 6.66 22.04 0.15 -2.23 16 12 Cl -0.04 -0.61 29.30 -2.72 -0.08 -0.69 16 13 C 0.05 0.74 11.35 83.48 0.95 1.69 16 14 N -0.41 -8.61 3.16 -534.16 -1.69 -10.30 16 15 C 0.07 1.32 10.30 127.77 1.32 2.64 16 16 C 0.13 4.55 5.53 86.36 0.48 5.03 16 17 C -0.09 -2.87 1.92 -10.72 -0.02 -2.89 16 18 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 19 C 0.16 6.34 5.41 86.38 0.47 6.81 16 20 N -0.75 -39.97 5.38 -343.46 -1.85 -41.82 16 21 C -0.24 -13.98 9.99 84.04 0.84 -13.14 16 22 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 23 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 24 N -0.97 -63.01 13.06 21.65 0.28 -62.73 16 25 Si 0.98 47.81 29.55 68.60 2.03 49.84 16 26 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 28 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.23 6.30 -2.39 -0.02 1.21 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 1.83 4.36 -2.39 -0.01 1.82 16 36 H 0.17 2.69 6.41 -2.91 -0.02 2.67 16 37 H 0.21 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.13 1.22 8.12 -2.39 -0.02 1.20 16 40 H 0.07 1.64 7.44 -2.38 -0.02 1.62 16 41 H 0.05 2.44 6.20 -2.39 -0.01 2.43 16 42 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.03 1.33 6.15 -2.39 -0.01 1.32 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.37 21.76 6.89 -92.70 -0.64 21.12 16 46 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -78.47 377.68 3.48 -74.99 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.36 Total: 29.99 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.94 Total: 5.54 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -5.70 Total: -134.37 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.07 Total: -25.30 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -78.47 3.48 -74.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132967308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.529 kcal (2) G-P(sol) polarization free energy of solvation -78.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds