Wall clock time and date at job start Tue Mar 31 2020 22:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30835 * 125.95915 * 2 1 4 4 C 1.33244 * 109.82681 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52397 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.46640 * 89.99783 * 5 4 3 7 7 C 1.47904 * 110.99727 * 69.87883 * 6 5 4 8 8 C 1.54000 * 107.05594 * 214.15416 * 7 6 5 9 9 C 1.54596 * 105.13784 * 1.22157 * 8 7 6 10 10 H 1.09004 * 110.72579 * 263.60390 * 9 8 7 11 11 C 1.52999 * 110.72357 * 140.49669 * 9 8 7 12 12 N 1.46500 * 109.46988 * 66.45616 * 11 9 8 13 13 C 1.34783 * 119.99771 * 180.02562 * 12 11 9 14 14 O 1.21273 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99677 * 179.97438 * 13 12 11 16 16 S 1.81005 * 109.46876 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99710 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00498 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99763 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00051 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00079 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47300 * 60.00356 * 21 19 17 23 23 H 1.48500 * 109.47085 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47331 * 300.00042 * 21 19 17 25 25 C 1.48529 * 111.00348 * 312.47606 * 6 5 4 26 26 N 1.30712 * 108.94650 * 0.02562 * 4 3 2 27 27 N 1.34424 * 125.96453 * 179.97438 * 2 1 3 28 28 H 0.97005 * 126.82354 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47454 * 90.00084 * 1 2 3 30 30 H 1.08996 * 109.46809 * 210.00025 * 1 2 3 31 31 H 1.09002 * 109.47264 * 329.99776 * 1 2 3 32 32 H 1.08993 * 109.46632 * 209.99765 * 5 4 3 33 33 H 1.08993 * 109.47099 * 329.99994 * 5 4 3 34 34 H 1.09005 * 109.91498 * 333.49892 * 7 6 5 35 35 H 1.08989 * 109.92407 * 94.79849 * 7 6 5 36 36 H 1.08992 * 110.31122 * 120.13555 * 8 7 6 37 37 H 1.09002 * 110.30819 * 242.21151 * 8 7 6 38 38 H 1.09006 * 109.47124 * 186.45097 * 11 9 8 39 39 H 1.08993 * 109.47153 * 306.44974 * 11 9 8 40 40 H 0.97000 * 120.00039 * 359.97438 * 12 11 9 41 41 H 1.08998 * 109.47052 * 299.99422 * 15 13 12 42 42 H 1.09002 * 109.47258 * 59.99880 * 15 13 12 43 43 H 0.97006 * 119.99957 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.67013 * 278.15830 * 25 6 5 45 45 H 1.09004 * 110.66585 * 41.28698 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6238 0.0013 6 7 5.1205 1.9273 1.3866 7 6 5.7118 0.7420 2.0447 8 6 5.2954 0.7934 3.5265 9 6 4.4125 2.0560 3.6541 10 1 4.9998 2.9032 4.0084 11 6 3.2262 1.7952 4.5845 12 7 3.7141 1.5782 5.9487 13 6 2.8411 1.3279 6.9448 14 8 1.6519 1.2830 6.7117 15 6 3.3431 1.1041 8.3480 16 16 1.9396 0.7957 9.4487 17 6 2.7910 0.5755 10.9755 18 1 3.8679 0.6495 11.0089 19 6 2.0775 0.3078 12.1356 20 7 0.7648 0.2180 12.0950 21 14 2.9800 0.0736 13.7542 22 1 3.7427 1.3057 14.0785 23 1 1.9976 -0.1995 14.8338 24 1 3.9173 -1.0724 13.6371 25 6 3.9324 2.2916 2.2000 26 7 3.6194 -0.6167 0.0004 27 7 2.2964 -1.0880 0.0005 28 1 2.0094 -2.0146 0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 5.5745 1.1512 -0.5122 33 1 4.4703 2.5472 -0.5125 34 1 5.3294 -0.1684 1.5830 35 1 6.7981 0.7751 1.9629 36 1 4.7236 -0.0963 3.7898 37 1 6.1754 0.8794 4.1639 38 1 2.5574 2.6559 4.5705 39 1 2.6869 0.9105 4.2464 40 1 4.6653 1.6138 6.1351 41 1 4.0119 0.2435 8.3617 42 1 3.8823 1.9888 8.6865 43 1 0.2661 0.0313 12.9058 44 1 3.6675 3.3378 2.0470 45 1 3.0899 1.6418 1.9630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267287110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:41 Heat of formation + Delta-G solvation = 52.671964 kcal Electronic energy + Delta-G solvation = -26459.199120 eV Core-core repulsion = 22639.618984 eV Total energy + Delta-G solvation = -3819.580136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.65695 -39.73298 -38.75786 -35.31020 -33.63248 -32.80065 -32.42392 -31.90934 -30.01376 -29.05588 -28.49766 -26.73931 -25.50845 -24.57779 -22.32746 -21.53555 -20.55742 -20.44190 -20.04987 -18.26474 -17.85225 -16.88123 -16.42970 -16.11989 -15.90359 -15.23801 -15.06301 -14.93176 -14.79927 -14.40521 -14.28539 -13.87843 -13.57524 -13.41477 -13.26688 -13.10961 -13.02101 -12.59557 -12.41380 -12.28136 -12.01488 -11.87840 -11.70428 -11.34207 -11.08967 -11.04030 -11.03047 -10.87432 -10.75993 -10.45416 -10.36433 -9.90794 -9.81846 -9.38407 -9.05893 -8.93444 -8.84551 -8.23436 -6.49490 -6.21117 -3.91656 1.15712 2.20745 2.40986 3.04364 3.12417 3.23832 3.27752 3.31580 3.49960 3.67707 3.79422 4.12566 4.21111 4.36029 4.39364 4.45012 4.63026 4.83666 4.92513 5.01450 5.12269 5.13895 5.17034 5.19860 5.30175 5.31138 5.35390 5.47746 5.51293 5.61304 5.65605 5.70720 5.79491 5.85456 5.89150 5.94490 5.98599 6.06002 6.15324 6.47300 6.55999 6.62979 6.65794 7.59760 7.67652 7.74109 8.35557 8.63843 9.24018 10.86265 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.002052 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.368081 B =13643.470325 C =14496.855339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.286 3.714 3 N -0.531 5.531 4 C 0.197 3.803 5 C 0.136 3.864 6 N -0.498 5.498 7 C 0.026 3.974 8 C -0.127 4.127 9 C -0.104 4.104 10 H 0.091 0.909 11 C 0.134 3.866 12 N -0.737 5.737 13 C 0.531 3.469 14 O -0.519 6.519 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.040 3.960 26 N -0.309 5.309 27 N -0.483 5.483 28 H 0.440 0.560 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.089 0.911 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 0.249 -28.022 28.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.008 3.992 3 N -0.262 5.262 4 C -0.088 4.088 5 C 0.005 3.995 6 N -0.221 5.221 7 C -0.102 4.102 8 C -0.165 4.165 9 C -0.123 4.123 10 H 0.110 0.890 11 C 0.009 3.991 12 N -0.391 5.391 13 C 0.317 3.683 14 O -0.394 6.394 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.088 4.088 26 N -0.139 5.139 27 N -0.201 5.201 28 H 0.286 0.714 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.711 0.563 -28.354 28.928 hybrid contribution 1.438 -1.556 1.373 2.525 sum 7.149 -0.994 -26.981 27.929 Atomic orbital electron populations 1.20446 0.83429 1.05537 1.04580 1.24488 0.96771 0.82824 0.95155 1.70480 1.01228 1.29397 1.25051 1.25306 0.94534 0.90741 0.98204 1.20966 0.90125 0.95978 0.92415 1.65117 1.24649 1.31508 1.00808 1.23029 1.00547 0.92575 0.94055 1.22484 0.99987 0.97997 0.96066 1.22342 0.96330 0.98791 0.94887 0.89025 1.21180 0.95358 1.01400 0.81117 1.45972 1.10251 1.75063 1.07848 1.20311 0.86287 0.75470 0.86227 1.90693 1.15974 1.49022 1.83663 1.23528 1.06675 1.04716 0.95438 1.85381 1.05141 1.92651 1.00245 1.22829 0.95273 1.56461 0.93816 0.90979 1.24995 0.94974 0.94659 0.98973 1.70013 1.05601 1.45603 1.29129 0.86222 0.79130 0.78824 0.81311 1.19913 1.20814 1.19958 1.23337 0.92206 1.02435 0.90793 1.78007 0.97011 1.12435 1.26450 1.48027 1.04356 1.10187 1.57512 0.71396 0.88911 0.89658 0.87997 0.88392 0.87517 0.92356 0.89972 0.91304 0.90640 0.91379 0.92196 0.76834 0.89301 0.89191 0.92141 0.89256 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.29 2.34 8.24 -155.70 -1.28 1.05 16 3 N -0.53 -5.55 9.92 -8.16 -0.08 -5.63 16 4 C 0.20 2.01 5.41 -156.85 -0.85 1.16 16 5 C 0.14 1.15 6.11 -4.97 -0.03 1.12 16 6 N -0.50 -4.52 5.54 -231.89 -1.28 -5.81 16 7 C 0.03 0.23 6.46 -2.75 -0.02 0.21 16 8 C -0.13 -1.17 6.20 -25.37 -0.16 -1.33 16 9 C -0.10 -1.01 3.12 -88.76 -0.28 -1.28 16 10 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 11 C 0.13 1.68 5.02 -4.04 -0.02 1.66 16 12 N -0.74 -10.19 5.40 -60.29 -0.33 -10.51 16 13 C 0.53 10.14 7.85 -10.98 -0.09 10.06 16 14 O -0.52 -12.05 15.86 5.56 0.09 -11.96 16 15 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 25 C 0.04 0.40 5.74 -1.90 -0.01 0.39 16 26 N -0.31 -3.22 11.67 32.42 0.38 -2.84 16 27 N -0.48 -3.82 7.45 32.62 0.24 -3.57 16 28 H 0.44 2.05 8.96 -182.33 -1.63 0.42 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.59 6.18 -51.93 -0.32 0.27 16 35 H 0.08 0.66 8.14 -51.94 -0.42 0.23 16 36 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 40 H 0.40 4.37 8.33 -40.82 -0.34 4.03 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.73 5.24 -51.93 -0.27 0.46 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -37.24 384.64 -11.62 -48.86 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.01 Total: 1.55 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.93 Total: -2.91 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.34 Total: -53.94 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.24 -11.62 -48.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267287110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.534 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds