Wall clock time and date at job start Tue Mar 31 2020 22:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30835 * 125.95915 * 2 1 4 4 C 1.33244 * 109.82681 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52397 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.46640 * 89.99783 * 5 4 3 7 7 C 1.47904 * 110.99727 * 69.87883 * 6 5 4 8 8 C 1.54000 * 107.05594 * 214.15416 * 7 6 5 9 9 C 1.54596 * 105.13784 * 1.22157 * 8 7 6 10 10 H 1.09004 * 110.72579 * 263.60390 * 9 8 7 11 11 C 1.52999 * 110.72357 * 140.49669 * 9 8 7 12 12 N 1.46500 * 109.46988 * 66.45616 * 11 9 8 13 13 C 1.34783 * 119.99771 * 180.02562 * 12 11 9 14 14 O 1.21273 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99677 * 179.97438 * 13 12 11 16 16 S 1.81005 * 109.46876 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99710 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00498 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99763 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00051 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00079 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47300 * 60.00356 * 21 19 17 23 23 H 1.48500 * 109.47085 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47331 * 300.00042 * 21 19 17 25 25 C 1.48529 * 111.00348 * 312.47606 * 6 5 4 26 26 N 1.30712 * 108.94650 * 0.02562 * 4 3 2 27 27 N 1.34424 * 125.96453 * 179.97438 * 2 1 3 28 28 H 0.97005 * 126.82354 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47454 * 90.00084 * 1 2 3 30 30 H 1.08996 * 109.46809 * 210.00025 * 1 2 3 31 31 H 1.09002 * 109.47264 * 329.99776 * 1 2 3 32 32 H 1.08993 * 109.46632 * 209.99765 * 5 4 3 33 33 H 1.08993 * 109.47099 * 329.99994 * 5 4 3 34 34 H 1.09005 * 109.91498 * 333.49892 * 7 6 5 35 35 H 1.08989 * 109.92407 * 94.79849 * 7 6 5 36 36 H 1.08992 * 110.31122 * 120.13555 * 8 7 6 37 37 H 1.09002 * 110.30819 * 242.21151 * 8 7 6 38 38 H 1.09006 * 109.47124 * 186.45097 * 11 9 8 39 39 H 1.08993 * 109.47153 * 306.44974 * 11 9 8 40 40 H 0.97000 * 120.00039 * 359.97438 * 12 11 9 41 41 H 1.08998 * 109.47052 * 299.99422 * 15 13 12 42 42 H 1.09002 * 109.47258 * 59.99880 * 15 13 12 43 43 H 0.97006 * 119.99957 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.67013 * 278.15830 * 25 6 5 45 45 H 1.09004 * 110.66585 * 41.28698 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6238 0.0013 6 7 5.1205 1.9273 1.3866 7 6 5.7118 0.7420 2.0447 8 6 5.2954 0.7934 3.5265 9 6 4.4125 2.0560 3.6541 10 1 4.9998 2.9032 4.0084 11 6 3.2262 1.7952 4.5845 12 7 3.7141 1.5782 5.9487 13 6 2.8411 1.3279 6.9448 14 8 1.6519 1.2830 6.7117 15 6 3.3431 1.1041 8.3480 16 16 1.9396 0.7957 9.4487 17 6 2.7910 0.5755 10.9755 18 1 3.8679 0.6495 11.0089 19 6 2.0775 0.3078 12.1356 20 7 0.7648 0.2180 12.0950 21 14 2.9800 0.0736 13.7542 22 1 3.7427 1.3057 14.0785 23 1 1.9976 -0.1995 14.8338 24 1 3.9173 -1.0724 13.6371 25 6 3.9324 2.2916 2.2000 26 7 3.6194 -0.6167 0.0004 27 7 2.2964 -1.0880 0.0005 28 1 2.0094 -2.0146 0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 5.5745 1.1512 -0.5122 33 1 4.4703 2.5472 -0.5125 34 1 5.3294 -0.1684 1.5830 35 1 6.7981 0.7751 1.9629 36 1 4.7236 -0.0963 3.7898 37 1 6.1754 0.8794 4.1639 38 1 2.5574 2.6559 4.5705 39 1 2.6869 0.9105 4.2464 40 1 4.6653 1.6138 6.1351 41 1 4.0119 0.2435 8.3617 42 1 3.8823 1.9888 8.6865 43 1 0.2661 0.0313 12.9058 44 1 3.6675 3.3378 2.0470 45 1 3.0899 1.6418 1.9630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267287110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:40 Heat of formation + Delta-G solvation = 23.991035 kcal Electronic energy + Delta-G solvation = -26460.442819 eV Core-core repulsion = 22639.618984 eV Total energy + Delta-G solvation = -3820.823834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.31952 -40.86613 -39.90038 -36.40806 -34.59355 -34.50069 -33.43444 -32.82237 -31.17277 -30.09522 -29.14879 -27.75992 -27.44687 -25.58226 -23.06150 -22.24167 -21.74333 -21.30553 -20.96909 -19.82398 -18.90261 -17.94408 -17.68638 -17.07388 -16.98050 -16.87748 -16.50254 -16.07125 -15.75012 -15.61412 -15.13479 -14.98524 -14.69794 -14.54459 -14.39115 -13.99554 -13.78848 -13.69627 -13.45250 -13.18483 -13.17214 -12.87464 -12.86574 -12.79823 -12.61816 -12.42371 -12.14322 -11.97668 -11.74372 -11.64067 -11.16108 -11.13142 -11.06087 -10.98681 -10.57230 -10.29043 -10.17295 -9.66351 -8.67630 -8.34819 -6.13245 0.50456 1.26021 1.43980 1.46263 1.56147 1.58531 1.64942 1.73199 2.23174 2.28043 2.86955 2.99183 3.08131 3.30574 3.48590 3.61061 3.62843 3.76944 3.90107 3.99805 4.24430 4.26516 4.30835 4.33292 4.44649 4.49951 4.58185 4.63121 4.64479 4.67790 4.74007 4.78016 4.89228 5.00552 5.02254 5.11336 5.18154 5.22570 5.33166 5.39521 5.41460 5.74416 5.85858 6.11713 6.19451 6.47619 7.01297 7.06257 7.21224 8.74203 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.002052 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.368081 B =13643.470325 C =14496.855339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.283 3.717 3 N -0.560 5.560 4 C 0.190 3.810 5 C 0.136 3.864 6 N -0.494 5.494 7 C 0.028 3.972 8 C -0.125 4.125 9 C -0.092 4.092 10 H 0.108 0.892 11 C 0.139 3.861 12 N -0.709 5.709 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.128 4.128 16 S -0.152 6.152 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.043 3.957 26 N -0.334 5.334 27 N -0.479 5.479 28 H 0.453 0.547 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.093 0.907 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.251 0.438 -28.181 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.006 3.994 3 N -0.291 5.291 4 C -0.095 4.095 5 C 0.005 3.995 6 N -0.216 5.216 7 C -0.099 4.099 8 C -0.163 4.163 9 C -0.111 4.111 10 H 0.126 0.874 11 C 0.015 3.985 12 N -0.363 5.363 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.280 4.280 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.085 4.085 26 N -0.165 5.165 27 N -0.198 5.198 28 H 0.301 0.699 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.107 0.742 -28.551 29.689 hybrid contribution 0.706 -1.619 1.269 2.175 sum 8.813 -0.876 -27.282 28.683 Atomic orbital electron populations 1.20618 0.80913 1.06152 1.06045 1.25150 0.98086 0.82414 0.93788 1.70475 1.01675 1.30658 1.26327 1.25569 0.94973 0.90904 0.98018 1.21074 0.90126 0.96188 0.92144 1.65154 1.23989 1.31485 1.01006 1.23030 1.01301 0.92005 0.93610 1.22478 1.00274 0.96805 0.96724 1.22251 0.95162 0.99671 0.94030 0.87378 1.21198 0.96533 1.00260 0.80520 1.45692 1.10583 1.72714 1.07325 1.20113 0.86027 0.75431 0.86580 1.90685 1.18065 1.51579 1.84232 1.23365 1.03607 1.06469 0.94523 1.85576 1.10803 1.93183 1.02943 1.23171 0.95765 1.56447 0.94057 0.89858 1.26144 0.95816 0.93951 1.03297 1.70182 1.07587 1.46700 1.30335 0.84997 0.77819 0.79398 0.75745 1.18597 1.20402 1.18663 1.23262 0.92061 1.02257 0.90933 1.77924 0.98429 1.12749 1.27383 1.48005 1.03705 1.10950 1.57188 0.69938 0.86892 0.87807 0.88542 0.87241 0.86806 0.93666 0.88471 0.92997 0.88731 0.92133 0.93960 0.74621 0.87216 0.87032 0.91981 0.88885 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.28 4.54 8.24 138.23 1.14 5.68 16 3 N -0.56 -11.68 9.92 -179.72 -1.78 -13.47 16 4 C 0.19 3.83 5.41 138.63 0.75 4.58 16 5 C 0.14 2.16 6.11 85.56 0.52 2.68 16 6 N -0.49 -8.23 5.54 -887.57 -4.91 -13.14 16 7 C 0.03 0.46 6.46 86.45 0.56 1.02 16 8 C -0.12 -2.05 6.20 31.48 0.19 -1.86 16 9 C -0.09 -1.61 3.12 -9.59 -0.03 -1.64 16 10 H 0.11 1.62 8.14 -2.38 -0.02 1.61 16 11 C 0.14 3.37 5.02 86.38 0.43 3.81 16 12 N -0.71 -18.40 5.40 -463.06 -2.50 -20.90 16 13 C 0.53 20.01 7.85 87.66 0.69 20.70 16 14 O -0.57 -26.85 15.86 -3.01 -0.05 -26.90 16 15 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 16 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 17 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.72 5.49 84.86 0.47 1.19 16 20 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 21 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 C 0.04 0.81 5.74 86.65 0.50 1.31 16 26 N -0.33 -6.91 11.67 -51.33 -0.60 -7.51 16 27 N -0.48 -7.44 7.45 -50.71 -0.38 -7.82 16 28 H 0.45 4.03 8.96 -213.09 -1.91 2.11 16 29 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 1.45 8.08 -2.39 -0.02 1.43 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.04 0.88 6.18 -2.38 -0.01 0.86 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.05 7.80 -2.39 -0.02 1.03 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.04 1.20 8.07 -2.39 -0.02 1.18 16 40 H 0.42 7.85 8.33 -92.71 -0.77 7.08 16 41 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 42 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 43 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.05 1.04 5.24 -2.39 -0.01 1.03 16 Total: -1.00 -82.82 384.64 -3.67 -86.49 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -1.65 Total: 20.92 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 7.05 Total: 2.31 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -9.89 Total: -118.74 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -82.82 -3.67 -86.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267287110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.479 kcal (2) G-P(sol) polarization free energy of solvation -82.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds