Wall clock time and date at job start Tue Mar 31 2020 23:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47371 * 2 1 4 4 C 1.50708 * 109.47334 * 120.00240 * 2 1 3 5 5 H 1.08002 * 119.99723 * 120.00091 * 4 2 1 6 6 C 1.37875 * 119.99918 * 299.99958 * 4 2 1 7 7 N 1.31513 * 119.99837 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99945 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47136 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47423 * 300.00394 * 8 6 4 11 11 H 1.48502 * 109.47002 * 60.00003 * 8 6 4 12 12 N 1.46902 * 109.47174 * 240.00183 * 2 1 3 13 13 C 1.46902 * 110.99805 * 84.99990 * 12 2 1 14 14 C 1.50699 * 109.46750 * 180.02562 * 13 12 2 15 15 O 1.21271 * 120.00436 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99915 * 180.02562 * 14 13 12 17 17 C 1.38636 * 120.00432 * 175.97894 * 16 14 13 18 18 C 1.39080 * 126.44604 * 79.59571 * 17 16 14 19 19 C 1.43202 * 126.47308 * 359.97438 * 18 17 16 20 20 N 6.96980 * 78.62791 * 251.53563 * 2 1 3 21 21 C 1.41384 * 107.04585 * 179.85221 * 18 17 16 22 22 N 1.30422 * 108.24333 * 0.41905 * 21 18 17 23 23 N 1.35194 * 126.44135 * 259.91072 * 17 16 14 24 24 C 1.40129 * 125.78516 * 359.97315 * 23 17 16 25 25 C 1.38849 * 120.07281 * 319.34078 * 24 23 17 26 26 C 1.38120 * 119.93278 * 179.68232 * 25 24 23 27 27 C 1.38276 * 120.06381 * 0.61476 * 26 25 24 28 28 C 1.38280 * 120.14237 * 359.68333 * 27 26 25 29 29 C 1.38123 * 120.06567 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.46987 * 299.99285 * 1 2 3 31 31 H 1.08994 * 109.47424 * 59.99646 * 1 2 3 32 32 H 1.09000 * 109.47371 * 180.02562 * 1 2 3 33 33 H 0.97005 * 119.99939 * 179.97438 * 7 6 4 34 34 H 1.00901 * 111.00152 * 321.04811 * 12 2 1 35 35 H 1.08996 * 109.46870 * 299.99588 * 13 12 2 36 36 H 1.09000 * 109.47366 * 59.99967 * 13 12 2 37 37 H 0.97002 * 120.00061 * 355.97391 * 16 14 13 38 38 H 1.08002 * 125.88019 * 180.17370 * 21 18 17 39 39 H 1.08005 * 120.03038 * 359.97399 * 25 24 23 40 40 H 1.07997 * 119.96411 * 180.31831 * 26 25 24 41 41 H 1.08006 * 119.92852 * 179.70154 * 27 26 25 42 42 H 1.07999 * 119.97463 * 180.02562 * 28 27 26 43 43 H 1.08001 * 120.03474 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 1.8271 -0.4201 5.2204 10 1 1.8260 -2.5204 4.0076 11 1 3.8065 -1.1211 4.0080 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5873 -0.5217 -3.5560 15 8 2.8677 -1.6984 -3.4703 16 7 2.7282 0.1206 -4.7325 17 6 3.2708 -0.5413 -5.8231 18 6 2.6094 -1.4323 -6.6616 19 6 1.2401 -1.8393 -6.5611 20 7 0.1556 -2.1641 -6.4812 21 6 3.5437 -1.8580 -7.6336 22 7 4.6830 -1.2722 -7.3889 23 7 4.5439 -0.4467 -6.2680 24 6 5.5528 0.3445 -5.7025 25 6 5.2621 1.6251 -5.2514 26 6 6.2573 2.4000 -4.6886 27 6 7.5448 1.9065 -4.5857 28 6 7.8390 0.6339 -5.0397 29 6 6.8466 -0.1486 -5.5971 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.7090 1.1613 3.4845 34 1 1.4495 -1.4979 -1.4101 35 1 1.0870 0.6163 -2.5525 36 1 2.7588 1.0463 -2.1182 37 1 2.4499 1.0461 -4.8162 38 1 3.3488 -2.5521 -8.4377 39 1 4.2577 2.0130 -5.3362 40 1 6.0305 3.3942 -4.3328 41 1 8.3224 2.5161 -4.1496 42 1 8.8455 0.2509 -4.9577 43 1 7.0767 -1.1426 -5.9511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001422010543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:09 Heat of formation + Delta-G solvation = 118.736028 kcal Electronic energy + Delta-G solvation = -28219.103348 eV Core-core repulsion = 24266.944014 eV Total energy + Delta-G solvation = -3952.159334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.26207 -39.66438 -39.32045 -36.52203 -35.95249 -35.13360 -33.82755 -32.57243 -31.43519 -30.30685 -29.61338 -29.01074 -25.74901 -25.10086 -24.02571 -23.56705 -22.28926 -21.46609 -20.80070 -20.27674 -19.34830 -17.68162 -17.53297 -16.83920 -16.35999 -16.18042 -15.77178 -15.40329 -14.84685 -14.69928 -14.60650 -14.41903 -14.24456 -13.89226 -13.59880 -13.53944 -13.26963 -12.99935 -12.94782 -12.72775 -12.68369 -12.08342 -11.77049 -11.69528 -11.65485 -11.42883 -10.94960 -10.87071 -10.62122 -10.54178 -10.20783 -10.13497 -10.03356 -9.87756 -9.41917 -9.28467 -9.07284 -8.67250 -8.39704 -7.39774 -6.02857 -4.05708 0.36499 0.92902 1.21968 1.58182 1.81265 2.49729 2.62609 2.74439 3.29107 3.34322 3.37515 3.40900 3.42149 3.86619 4.32499 4.41593 4.45002 4.48881 4.64058 4.70211 4.84373 4.95182 5.03023 5.13373 5.17771 5.19567 5.29349 5.54693 5.59814 5.63808 5.67695 5.83233 5.94389 5.99352 6.08031 6.32617 6.57867 6.69860 6.76204 6.89836 6.97203 7.06411 7.21869 7.51770 7.67100 7.81961 8.00981 8.16903 8.39761 8.50654 9.01526 9.59732 11.04368 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010368 B = 0.003165 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.989281 B = 8845.917404 C =10675.410450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.214 3.786 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.668 5.668 13 C 0.050 3.950 14 C 0.521 3.479 15 O -0.488 6.488 16 N -0.679 5.679 17 C 0.378 3.622 18 C -0.165 4.165 19 C 0.292 3.708 20 N -0.420 5.420 21 C 0.111 3.889 22 N -0.268 5.268 23 N -0.307 5.307 24 C 0.139 3.861 25 C -0.118 4.118 26 C -0.098 4.098 27 C -0.112 4.112 28 C -0.102 4.102 29 C -0.098 4.098 30 H 0.092 0.908 31 H 0.005 0.995 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.337 0.663 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.418 0.582 38 H 0.205 0.795 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.821 5.344 -20.995 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.107 3.893 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.299 5.299 13 C -0.083 4.083 14 C 0.309 3.691 15 O -0.356 6.356 16 N -0.338 5.338 17 C 0.154 3.846 18 C -0.182 4.182 19 C -0.023 4.023 20 N -0.097 5.097 21 C -0.078 4.078 22 N -0.086 5.086 23 N -0.084 5.084 24 C 0.048 3.952 25 C -0.138 4.138 26 C -0.116 4.116 27 C -0.130 4.130 28 C -0.120 4.120 29 C -0.118 4.118 30 H 0.110 0.890 31 H 0.024 0.976 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.155 0.845 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.258 0.742 38 H 0.222 0.778 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.227 4.332 -20.747 23.985 hybrid contribution -1.218 0.183 0.808 1.473 sum 10.009 4.515 -19.939 22.762 Atomic orbital electron populations 1.22468 1.00469 0.99563 1.00606 1.19233 0.89714 0.94414 0.85971 0.94606 1.21090 1.30410 1.12600 0.89358 0.91792 1.24927 0.95252 0.95188 0.99037 1.69863 1.37235 1.23166 1.23561 0.86534 0.79205 0.79681 0.81829 1.21438 1.20290 1.20242 1.60645 1.59244 1.08312 1.01743 1.21797 1.00394 0.96890 0.89261 1.21612 0.76655 0.88038 0.82809 1.90761 1.46128 1.15555 1.83193 1.43162 1.64886 1.17089 1.08675 1.17783 0.83715 0.94689 0.88425 1.15823 0.89530 1.09640 1.03226 1.24169 0.91108 0.93400 0.93668 1.81231 1.11480 1.09038 1.07909 1.23996 0.88199 0.97752 0.97854 1.77397 1.21923 1.08312 1.00987 1.46047 1.06392 1.33536 1.22402 1.17460 0.87534 0.90148 1.00030 1.20973 1.00558 0.91652 1.00628 1.21055 0.92443 1.00070 0.98066 1.21348 0.96966 0.95931 0.98772 1.21125 0.99317 0.94092 0.97490 1.21044 0.90967 1.00754 0.99044 0.88959 0.97637 0.95077 0.92957 0.84475 0.92655 0.87964 0.74184 0.77819 0.85543 0.84561 0.85038 0.84766 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.94 37.15 0.33 -3.67 16 2 C 0.21 5.19 2.57 -68.86 -0.18 5.01 16 3 H 0.04 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.50 -13.61 8.84 -34.44 -0.30 -13.92 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.67 -14.14 5.86 -109.22 -0.64 -14.78 16 13 C 0.05 0.80 5.97 -4.98 -0.03 0.77 16 14 C 0.52 8.03 7.82 -10.99 -0.09 7.94 16 15 O -0.49 -9.61 16.17 5.56 0.09 -9.52 16 16 N -0.68 -7.65 4.28 -10.98 -0.05 -7.70 16 17 C 0.38 4.51 6.22 -152.95 -0.95 3.56 16 18 C -0.16 -1.94 6.00 -106.46 -0.64 -2.57 16 19 C 0.29 3.98 15.79 -22.51 -0.36 3.63 16 20 N -0.42 -6.60 18.53 41.80 0.77 -5.83 16 21 C 0.11 1.04 11.99 -16.95 -0.20 0.84 16 22 N -0.27 -2.93 12.29 30.88 0.38 -2.55 16 23 N -0.31 -3.54 3.70 -9.42 -0.03 -3.57 16 24 C 0.14 1.48 6.29 -83.61 -0.53 0.95 16 25 C -0.12 -1.02 9.12 -39.40 -0.36 -1.38 16 26 C -0.10 -0.73 10.04 -39.61 -0.40 -1.13 16 27 C -0.11 -0.81 10.04 -39.55 -0.40 -1.21 16 28 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 29 C -0.10 -0.97 9.82 -39.40 -0.39 -1.36 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 31 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 32 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.34 7.31 8.17 -39.29 -0.32 6.99 16 35 H 0.06 0.81 7.44 -51.93 -0.39 0.42 16 36 H 0.10 1.48 8.06 -51.93 -0.42 1.07 16 37 H 0.42 3.14 8.01 -40.82 -0.33 2.81 16 38 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.13 0.86 6.72 -52.48 -0.35 0.51 16 40 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 382.07 15.07 5.76 5.76 Total: -1.00 -34.42 382.07 -8.08 -42.50 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.99 Total: 6.04 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -4.97 Total: -2.30 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 1.06 Total: -58.90 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.42 -8.08 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422010543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.239 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds