Wall clock time and date at job start Tue Mar 31 2020 23:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47614 * 2 1 4 4 N 1.46901 * 109.46897 * 120.00332 * 2 1 3 5 5 C 1.46901 * 110.99926 * 275.00123 * 4 2 1 6 6 C 1.50698 * 109.47290 * 180.02562 * 5 4 2 7 7 C 1.30997 * 120.00607 * 127.20053 * 6 5 4 8 8 C 1.50699 * 119.99731 * 7.48698 * 7 6 5 9 9 N 1.46508 * 109.47198 * 127.15558 * 8 7 6 10 10 C 1.34775 * 119.99940 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.50708 * 119.99465 * 180.02562 * 10 9 8 13 13 S 1.81005 * 109.46575 * 180.02562 * 12 10 9 14 14 C 1.76200 * 99.99752 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99795 * 0.02562 * 14 13 12 16 16 C 1.38797 * 119.99942 * 179.97438 * 14 13 12 17 17 N 1.31633 * 119.99969 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00172 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47206 * 89.99996 * 18 16 14 20 20 H 1.48500 * 109.47561 * 209.99896 * 18 16 14 21 21 H 1.48497 * 109.47208 * 330.00099 * 18 16 14 22 22 C 1.50707 * 109.47398 * 239.99842 * 2 1 3 23 23 N 1.30518 * 126.34681 * 284.69776 * 22 2 1 24 24 N 1.28597 * 109.67199 * 179.81972 * 23 22 2 25 25 C 1.30513 * 109.67186 * 0.44659 * 24 23 22 26 26 N 1.35485 * 126.34542 * 105.00088 * 22 2 1 27 27 C 1.46502 * 126.98070 * 0.02562 * 26 22 2 28 28 H 1.09002 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47297 * 300.00336 * 1 2 3 30 30 H 1.09006 * 109.46832 * 59.99658 * 1 2 3 31 31 H 1.00903 * 111.00341 * 38.95214 * 4 2 1 32 32 H 1.08997 * 109.47460 * 59.99594 * 5 4 2 33 33 H 1.09003 * 109.46797 * 299.99830 * 5 4 2 34 34 H 1.08008 * 119.99989 * 307.20292 * 6 5 4 35 35 H 1.08000 * 120.00290 * 187.21337 * 7 6 5 36 36 H 1.09000 * 109.47648 * 247.15474 * 8 7 6 37 37 H 1.08995 * 109.47258 * 7.16028 * 8 7 6 38 38 H 0.96995 * 119.99579 * 359.97438 * 9 8 7 39 39 H 1.08997 * 109.46885 * 299.99508 * 12 10 9 40 40 H 1.08995 * 109.47038 * 59.99932 * 12 10 9 41 41 H 0.96995 * 120.00461 * 180.02562 * 17 16 14 42 42 H 1.08001 * 126.34626 * 179.72635 * 25 24 23 43 43 H 1.09002 * 109.47418 * 89.99989 * 27 26 22 44 44 H 1.09006 * 109.47421 * 210.00114 * 27 26 22 45 45 H 1.09001 * 109.47156 * 329.99893 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0823 0.2225 2.3469 6 6 2.5883 -0.5217 3.5557 7 6 3.6064 -0.0537 4.2343 8 6 4.1646 1.3085 3.9120 9 7 4.2235 2.1139 5.1344 10 6 4.6920 3.3767 5.0874 11 8 5.0644 3.8465 4.0332 12 6 4.7531 4.2049 6.3450 13 16 5.4219 5.8416 5.9575 14 6 5.3822 6.5753 7.5590 15 1 5.0157 6.0098 8.4031 16 6 5.8228 7.8795 7.7360 17 7 5.7936 8.4275 8.9325 18 14 6.4573 8.8572 6.2763 19 1 5.3305 9.5874 5.6421 20 1 7.4796 9.8300 6.7386 21 1 7.0662 7.9316 5.2876 22 6 2.0324 -0.7105 -1.2305 23 7 2.0388 -2.0002 -1.4306 24 7 2.5343 -2.2560 -2.5894 25 6 2.8752 -1.1417 -3.1772 26 7 2.5664 -0.1290 -2.3316 27 6 2.7692 1.3036 -2.5611 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.4494 -1.4980 1.4100 32 1 1.0870 0.6162 2.5525 33 1 2.7588 1.0460 2.1183 34 1 2.1115 -1.4409 3.8627 35 1 4.0430 -0.6423 5.0277 36 1 5.1675 1.2018 3.4986 37 1 3.5216 1.8014 3.1829 38 1 3.9245 1.7385 5.9773 39 1 3.7504 4.3113 6.7590 40 1 5.3967 3.7121 7.0737 41 1 6.1011 9.3390 9.0562 42 1 3.3208 -1.0448 -4.1562 43 1 3.7554 1.5937 -2.1987 44 1 2.6978 1.5143 -3.6282 45 1 2.0052 1.8688 -2.0273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482979634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:50 Heat of formation + Delta-G solvation = 69.532793 kcal Electronic energy + Delta-G solvation = -25470.335747 eV Core-core repulsion = 21651.486752 eV Total energy + Delta-G solvation = -3818.848995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.43678 -39.40270 -38.12347 -36.03927 -35.36487 -33.59209 -32.46187 -31.32296 -29.81843 -29.29728 -28.08789 -26.33595 -25.62877 -24.97357 -23.88571 -22.59179 -20.79494 -20.53477 -19.29483 -17.88949 -17.51044 -16.81635 -16.67240 -16.43494 -15.96676 -15.81563 -15.41603 -15.19745 -14.99029 -14.88756 -14.51808 -13.98033 -13.85421 -13.65191 -13.52972 -13.34775 -13.22652 -12.87973 -12.80818 -12.66948 -12.38319 -12.06250 -11.94766 -11.74398 -11.29534 -11.04917 -11.02162 -10.65045 -10.63391 -10.56058 -9.95546 -9.84600 -9.57837 -9.44215 -9.05101 -9.00635 -8.77607 -8.53097 -6.94583 -6.31202 -4.03157 1.41525 1.67351 2.05858 2.59802 2.78679 2.93899 3.29703 3.36859 3.47766 3.63697 3.72070 3.88149 4.10580 4.21772 4.30556 4.31651 4.41341 4.45405 4.55246 4.68261 4.74042 4.82225 4.88069 4.95270 4.99949 5.03884 5.07767 5.24164 5.26596 5.33080 5.44731 5.54366 5.56864 5.68167 5.74540 5.81260 5.99104 6.18038 6.31196 6.37357 6.49742 6.55078 6.86871 7.58814 7.91835 8.39454 8.44175 8.45177 9.14840 10.78019 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.001802 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.550905 B =15530.998401 C =16527.548251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.173 3.827 3 H 0.095 0.905 4 N -0.669 5.669 5 C 0.073 3.927 6 C -0.133 4.133 7 C -0.160 4.160 8 C 0.141 3.859 9 N -0.733 5.733 10 C 0.530 3.470 11 O -0.522 6.522 12 C -0.124 4.124 13 S -0.142 6.142 14 C -0.522 4.522 15 H 0.088 0.912 16 C 0.095 3.905 17 N -0.880 5.880 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 C 0.190 3.810 23 N -0.280 5.280 24 N -0.299 5.299 25 C 0.146 3.854 26 N -0.476 5.476 27 C 0.069 3.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.354 0.646 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.401 0.599 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.218 0.782 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 -18.442 -20.168 29.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.060 3.940 3 H 0.113 0.887 4 N -0.301 5.301 5 C -0.055 4.055 6 C -0.153 4.153 7 C -0.180 4.180 8 C 0.018 3.982 9 N -0.387 5.387 10 C 0.316 3.684 11 O -0.396 6.396 12 C -0.275 4.275 13 S 0.084 5.916 14 C -0.669 4.669 15 H 0.106 0.894 16 C -0.113 4.113 17 N -0.516 5.516 18 Si 0.682 3.318 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 C -0.078 4.078 23 N -0.120 5.120 24 N -0.138 5.138 25 C -0.142 4.142 26 N -0.167 5.167 27 C -0.074 4.074 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.234 0.766 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.659 -18.876 -21.763 30.385 hybrid contribution -0.879 1.341 1.118 1.955 sum -10.539 -17.535 -20.645 29.065 Atomic orbital electron populations 1.22480 0.94577 1.03727 1.03016 1.19669 0.93279 0.95985 0.85048 0.88669 1.60244 1.57995 1.09591 1.02248 1.21310 1.00412 0.95246 0.88526 1.22643 0.96516 1.00468 0.95649 1.22855 0.96682 0.96638 1.01778 1.20418 1.01631 0.88444 0.87695 1.45948 1.67476 1.13939 1.11355 1.20298 0.76247 0.81129 0.90687 1.90690 1.46474 1.70927 1.31549 1.23281 1.05672 1.00572 0.97937 1.84767 1.83266 1.07136 1.16455 1.22318 1.49965 1.02023 0.92610 0.89369 1.24718 0.94044 0.96540 0.96043 1.69937 1.45384 1.14879 1.21442 0.86729 0.80068 0.81518 0.83496 1.19237 1.19938 1.15932 1.24647 1.01065 0.91074 0.91025 1.74199 1.17650 1.10720 1.09466 1.74270 1.14437 1.23043 1.02092 1.26434 1.04604 0.83581 0.99549 1.46175 1.46199 1.09484 1.14819 1.22175 1.04290 0.76560 1.04419 0.90984 0.91034 0.91783 0.82566 0.93680 0.89188 0.86492 0.86142 0.90880 0.90641 0.76537 0.88470 0.88400 0.91933 0.76607 0.89473 0.88723 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 9.14 37.16 0.34 -0.62 16 2 C 0.17 1.18 2.90 -68.86 -0.20 0.98 16 3 H 0.10 0.55 6.89 -51.93 -0.36 0.19 16 4 N -0.67 -5.08 6.22 -109.22 -0.68 -5.76 16 5 C 0.07 0.51 5.57 -4.98 -0.03 0.48 16 6 C -0.13 -0.95 9.77 -36.03 -0.35 -1.30 16 7 C -0.16 -1.27 9.63 -36.03 -0.35 -1.62 16 8 C 0.14 1.51 5.76 -5.19 -0.03 1.48 16 9 N -0.73 -8.90 5.55 -61.47 -0.34 -9.24 16 10 C 0.53 9.10 7.85 -10.98 -0.09 9.02 16 11 O -0.52 -10.90 15.86 5.56 0.09 -10.81 16 12 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 13 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 14 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 15 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 16 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 17 N -0.88 -26.30 13.97 55.49 0.78 -25.53 16 18 Si 0.86 21.51 27.74 -169.99 -4.71 16.79 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 22 C 0.19 1.74 6.87 -154.99 -1.07 0.68 16 23 N -0.28 -3.43 12.21 32.80 0.40 -3.03 16 24 N -0.30 -3.59 12.21 29.69 0.36 -3.23 16 25 C 0.15 1.14 12.74 -89.95 -1.15 -0.01 16 26 N -0.48 -3.34 3.15 -122.68 -0.39 -3.72 16 27 C 0.07 0.20 10.84 59.85 0.65 0.85 16 28 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.07 0.32 7.45 -51.93 -0.39 -0.06 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.35 2.56 8.46 -39.29 -0.33 2.22 16 32 H 0.05 0.28 7.44 -51.93 -0.39 -0.11 16 33 H 0.09 0.72 5.21 -51.93 -0.27 0.45 16 34 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.82 5.30 -51.93 -0.28 0.55 16 38 H 0.40 3.75 8.46 -40.82 -0.35 3.40 16 39 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.22 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 45 H 0.09 0.17 7.46 -51.93 -0.39 -0.22 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -38.08 393.34 -8.94 -47.01 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.55 Total: 1.21 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.83 Total: -4.06 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.13 Total: -50.51 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.08 -8.94 -47.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482979634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.546 kcal (2) G-P(sol) polarization free energy of solvation -38.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds