Wall clock time and date at job start Tue Mar 31 2020 23:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47614 * 2 1 4 4 N 1.46901 * 109.46897 * 120.00332 * 2 1 3 5 5 C 1.46901 * 110.99926 * 275.00123 * 4 2 1 6 6 C 1.50698 * 109.47290 * 180.02562 * 5 4 2 7 7 C 1.30997 * 120.00607 * 127.20053 * 6 5 4 8 8 C 1.50699 * 119.99731 * 7.48698 * 7 6 5 9 9 N 1.46508 * 109.47198 * 127.15558 * 8 7 6 10 10 C 1.34775 * 119.99940 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.50708 * 119.99465 * 180.02562 * 10 9 8 13 13 S 1.81005 * 109.46575 * 180.02562 * 12 10 9 14 14 C 1.76200 * 99.99752 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99795 * 0.02562 * 14 13 12 16 16 C 1.38797 * 119.99942 * 179.97438 * 14 13 12 17 17 N 1.31633 * 119.99969 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00172 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47206 * 89.99996 * 18 16 14 20 20 H 1.48500 * 109.47561 * 209.99896 * 18 16 14 21 21 H 1.48497 * 109.47208 * 330.00099 * 18 16 14 22 22 C 1.50707 * 109.47398 * 239.99842 * 2 1 3 23 23 N 1.30518 * 126.34681 * 284.69776 * 22 2 1 24 24 N 1.28597 * 109.67199 * 179.81972 * 23 22 2 25 25 C 1.30513 * 109.67186 * 0.44659 * 24 23 22 26 26 N 1.35485 * 126.34542 * 105.00088 * 22 2 1 27 27 C 1.46502 * 126.98070 * 0.02562 * 26 22 2 28 28 H 1.09002 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47297 * 300.00336 * 1 2 3 30 30 H 1.09006 * 109.46832 * 59.99658 * 1 2 3 31 31 H 1.00903 * 111.00341 * 38.95214 * 4 2 1 32 32 H 1.08997 * 109.47460 * 59.99594 * 5 4 2 33 33 H 1.09003 * 109.46797 * 299.99830 * 5 4 2 34 34 H 1.08008 * 119.99989 * 307.20292 * 6 5 4 35 35 H 1.08000 * 120.00290 * 187.21337 * 7 6 5 36 36 H 1.09000 * 109.47648 * 247.15474 * 8 7 6 37 37 H 1.08995 * 109.47258 * 7.16028 * 8 7 6 38 38 H 0.96995 * 119.99579 * 359.97438 * 9 8 7 39 39 H 1.08997 * 109.46885 * 299.99508 * 12 10 9 40 40 H 1.08995 * 109.47038 * 59.99932 * 12 10 9 41 41 H 0.96995 * 120.00461 * 180.02562 * 17 16 14 42 42 H 1.08001 * 126.34626 * 179.72635 * 25 24 23 43 43 H 1.09002 * 109.47418 * 89.99989 * 27 26 22 44 44 H 1.09006 * 109.47421 * 210.00114 * 27 26 22 45 45 H 1.09001 * 109.47156 * 329.99893 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0823 0.2225 2.3469 6 6 2.5883 -0.5217 3.5557 7 6 3.6064 -0.0537 4.2343 8 6 4.1646 1.3085 3.9120 9 7 4.2235 2.1139 5.1344 10 6 4.6920 3.3767 5.0874 11 8 5.0644 3.8465 4.0332 12 6 4.7531 4.2049 6.3450 13 16 5.4219 5.8416 5.9575 14 6 5.3822 6.5753 7.5590 15 1 5.0157 6.0098 8.4031 16 6 5.8228 7.8795 7.7360 17 7 5.7936 8.4275 8.9325 18 14 6.4573 8.8572 6.2763 19 1 5.3305 9.5874 5.6421 20 1 7.4796 9.8300 6.7386 21 1 7.0662 7.9316 5.2876 22 6 2.0324 -0.7105 -1.2305 23 7 2.0388 -2.0002 -1.4306 24 7 2.5343 -2.2560 -2.5894 25 6 2.8752 -1.1417 -3.1772 26 7 2.5664 -0.1290 -2.3316 27 6 2.7692 1.3036 -2.5611 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.4494 -1.4980 1.4100 32 1 1.0870 0.6162 2.5525 33 1 2.7588 1.0460 2.1183 34 1 2.1115 -1.4409 3.8627 35 1 4.0430 -0.6423 5.0277 36 1 5.1675 1.2018 3.4986 37 1 3.5216 1.8014 3.1829 38 1 3.9245 1.7385 5.9773 39 1 3.7504 4.3113 6.7590 40 1 5.3967 3.7121 7.0737 41 1 6.1011 9.3390 9.0562 42 1 3.3208 -1.0448 -4.1562 43 1 3.7554 1.5937 -2.1987 44 1 2.6978 1.5143 -3.6282 45 1 2.0052 1.8688 -2.0273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482979634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:49 Heat of formation + Delta-G solvation = 41.945236 kcal Electronic energy + Delta-G solvation = -25471.532034 eV Core-core repulsion = 21651.486752 eV Total energy + Delta-G solvation = -3820.045282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.05075 -40.67296 -38.75342 -36.85768 -35.91104 -34.67379 -34.53369 -32.08460 -30.96653 -30.02579 -28.43910 -27.89156 -27.06663 -25.68331 -24.46522 -23.16206 -21.84156 -21.34003 -20.24898 -19.54558 -18.14968 -17.81593 -17.49403 -17.30883 -17.09533 -16.82654 -16.51937 -16.24825 -16.09739 -15.60600 -15.57101 -15.16832 -14.91379 -14.67873 -14.34742 -14.27656 -13.87346 -13.83711 -13.71244 -13.33968 -13.31052 -13.11809 -12.99506 -12.93351 -12.63146 -12.57463 -12.35629 -11.86723 -11.67812 -11.29243 -11.16312 -11.10290 -11.07455 -10.53325 -10.44522 -10.23519 -9.97195 -9.38419 -8.98550 -8.50704 -6.21541 0.83707 0.94391 1.12162 1.31955 1.48343 1.57062 1.58784 1.62643 1.92075 2.25307 2.39657 2.74652 2.87463 3.15402 3.35114 3.69873 3.74749 3.88818 3.91748 3.95481 4.00298 4.07422 4.23895 4.31214 4.35779 4.40016 4.46519 4.48976 4.57539 4.64332 4.67145 4.73394 4.81077 4.93679 4.99944 5.11799 5.23803 5.36633 5.59541 5.71402 5.79035 5.86817 6.01016 6.12320 6.32799 6.49237 6.94353 7.19937 7.78524 8.61606 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.001802 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.550905 B =15530.998401 C =16527.548251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.175 3.825 3 H 0.107 0.893 4 N -0.680 5.680 5 C 0.074 3.926 6 C -0.122 4.122 7 C -0.167 4.167 8 C 0.142 3.858 9 N -0.708 5.708 10 C 0.535 3.465 11 O -0.563 6.563 12 C -0.112 4.112 13 S -0.175 6.175 14 C -0.529 4.529 15 H 0.062 0.938 16 C 0.044 3.956 17 N -0.917 5.917 18 Si 0.915 3.085 19 H -0.261 1.261 20 H -0.260 1.260 21 H -0.236 1.236 22 C 0.185 3.815 23 N -0.324 5.324 24 N -0.353 5.353 25 C 0.156 3.844 26 N -0.475 5.475 27 C 0.061 3.939 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.355 0.645 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.417 0.583 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.277 0.723 42 H 0.256 0.744 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.343 -18.631 -21.393 30.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.062 3.938 3 H 0.125 0.875 4 N -0.313 5.313 5 C -0.053 4.053 6 C -0.141 4.141 7 C -0.187 4.187 8 C 0.019 3.981 9 N -0.361 5.361 10 C 0.320 3.680 11 O -0.442 6.442 12 C -0.263 4.263 13 S 0.052 5.948 14 C -0.677 4.677 15 H 0.080 0.920 16 C -0.161 4.161 17 N -0.555 5.555 18 Si 0.737 3.263 19 H -0.186 1.186 20 H -0.185 1.185 21 H -0.160 1.160 22 C -0.085 4.085 23 N -0.164 5.164 24 N -0.192 5.192 25 C -0.133 4.133 26 N -0.165 5.165 27 C -0.080 4.080 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.254 0.746 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.272 0.728 43 H 0.108 0.892 44 H 0.139 0.861 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.224 -19.101 -22.961 31.569 hybrid contribution -0.780 1.265 1.481 2.098 sum -11.004 -17.837 -21.479 30.010 Atomic orbital electron populations 1.22403 0.93513 1.03206 1.03855 1.19778 0.94030 0.96041 0.83976 0.87487 1.60203 1.58481 1.09931 1.02653 1.21278 1.00860 0.94842 0.88366 1.22853 0.95666 1.00687 0.94940 1.22744 0.97309 0.95491 1.03116 1.20495 1.01173 0.89682 0.86760 1.45734 1.65240 1.12196 1.12958 1.19954 0.76469 0.82340 0.89225 1.90680 1.48826 1.72134 1.32564 1.23279 1.06450 0.97099 0.99452 1.84674 1.84309 1.11438 1.14396 1.22473 1.49339 1.02263 0.93630 0.91978 1.25584 0.94319 0.97646 0.98560 1.70018 1.46537 1.15634 1.23312 0.85851 0.79936 0.80216 0.80279 1.18577 1.18486 1.16010 1.25044 1.00676 0.90707 0.92098 1.74077 1.19362 1.12668 1.10260 1.74153 1.16689 1.25451 1.02869 1.27166 1.02815 0.82860 1.00444 1.46425 1.45240 1.10898 1.13936 1.22505 1.04795 0.74226 1.06503 0.92165 0.89806 0.91241 0.82493 0.92342 0.90225 0.84794 0.84678 0.92262 0.90650 0.74566 0.86734 0.86876 0.91396 0.72789 0.89232 0.86059 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.14 71.98 0.66 -0.96 16 2 C 0.17 2.17 2.90 44.17 0.13 2.30 16 3 H 0.11 1.04 6.89 -2.39 -0.02 1.02 16 4 N -0.68 -9.53 6.22 -499.46 -3.10 -12.63 16 5 C 0.07 0.89 5.57 85.56 0.48 1.37 16 6 C -0.12 -1.44 9.77 25.65 0.25 -1.19 16 7 C -0.17 -2.25 9.63 25.65 0.25 -2.00 16 8 C 0.14 2.77 5.76 85.63 0.49 3.26 16 9 N -0.71 -15.59 5.55 -466.78 -2.59 -18.18 16 10 C 0.53 17.50 7.85 87.66 0.69 18.19 16 11 O -0.56 -23.08 15.86 -3.02 -0.05 -23.12 16 12 C -0.11 -4.05 6.16 71.24 0.44 -3.61 16 13 S -0.17 -8.63 18.55 -56.49 -1.05 -9.68 16 14 C -0.53 -30.39 10.04 67.95 0.68 -29.71 16 15 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 16 C 0.04 2.57 5.50 84.86 0.47 3.03 16 17 N -0.92 -55.28 13.97 21.65 0.30 -54.98 16 18 Si 0.92 44.27 27.74 68.60 1.90 46.17 16 19 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.24 -11.38 6.74 99.48 0.67 -10.71 16 22 C 0.18 3.28 6.87 137.98 0.95 4.23 16 23 N -0.32 -8.07 12.21 -50.16 -0.61 -8.69 16 24 N -0.35 -8.56 12.21 -59.99 -0.73 -9.29 16 25 C 0.16 2.26 12.74 180.11 2.30 4.56 16 26 N -0.47 -6.00 3.15 -542.06 -1.71 -7.71 16 27 C 0.06 0.21 10.84 127.77 1.38 1.59 16 28 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 29 H 0.08 0.58 7.45 -2.39 -0.02 0.56 16 30 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.35 4.81 8.46 -89.69 -0.76 4.05 16 32 H 0.06 0.56 7.44 -2.39 -0.02 0.55 16 33 H 0.08 1.15 5.21 -2.39 -0.01 1.14 16 34 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.52 5.30 -2.39 -0.01 1.51 16 38 H 0.42 6.56 8.46 -92.71 -0.78 5.77 16 39 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 40 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 41 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.26 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.12 -0.23 8.14 -2.38 -0.02 -0.25 16 45 H 0.10 0.14 7.46 -2.39 -0.02 0.12 16 Total: -1.00 -84.50 393.34 0.97 -83.54 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -0.56 Total: 13.50 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 9.16 Total: 1.07 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -8.44 Total: -111.48 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.17 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.05 Total: -9.68 kcal Total: -84.50 0.97 -83.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482979634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.484 kcal (2) G-P(sol) polarization free energy of solvation -84.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds