Wall clock time and date at job start Tue Mar 31 2020 23:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.00529 * 2 1 4 4 C 1.54327 * 109.88118 * 238.90160 * 2 1 3 5 5 H 1.08999 * 110.72043 * 144.23721 * 4 2 1 6 6 N 1.46904 * 110.71734 * 21.14224 * 4 2 1 7 7 C 1.46904 * 110.99930 * 157.43959 * 6 4 2 8 8 C 1.50690 * 109.47320 * 179.97438 * 7 6 4 9 9 C 1.35351 * 126.91729 * 94.95512 * 8 7 6 10 10 N 1.33769 * 106.50107 * 180.02562 * 9 8 7 11 11 N 1.28629 * 108.88659 * 359.97438 * 10 9 8 12 12 N 1.28714 * 110.17964 * 0.02562 * 11 10 9 13 13 C 1.46502 * 125.87180 * 179.73472 * 12 11 10 14 14 C 1.55152 * 103.10684 * 262.68907 * 4 2 1 15 15 C 1.55128 * 101.48373 * 324.72038 * 14 4 2 16 16 N 1.47025 * 109.88257 * 121.09783 * 2 1 3 17 17 C 1.34767 * 125.64720 * 300.43714 * 16 2 1 18 18 O 1.21279 * 120.00465 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99930 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.47231 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00132 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00127 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99780 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00166 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99888 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46870 * 90.00069 * 25 23 21 27 27 H 1.48499 * 109.47620 * 210.00072 * 25 23 21 28 28 H 1.48497 * 109.47154 * 330.00436 * 25 23 21 29 29 H 1.09005 * 109.47533 * 181.09627 * 1 2 3 30 30 H 1.09000 * 109.46987 * 301.09269 * 1 2 3 31 31 H 1.08999 * 109.47245 * 61.09368 * 1 2 3 32 32 H 1.00898 * 110.99947 * 281.39281 * 6 4 2 33 33 H 1.09001 * 109.46826 * 60.00046 * 7 6 4 34 34 H 1.09003 * 109.46675 * 300.00022 * 7 6 4 35 35 H 1.08004 * 126.74797 * 0.05551 * 9 8 7 36 36 H 1.08997 * 109.47250 * 90.02202 * 13 12 11 37 37 H 1.09003 * 109.47080 * 210.02696 * 13 12 11 38 38 H 1.09006 * 109.46804 * 330.02557 * 13 12 11 39 39 H 1.08998 * 111.00511 * 82.65529 * 14 4 2 40 40 H 1.08994 * 111.01066 * 206.51181 * 14 4 2 41 41 H 1.08999 * 110.20350 * 277.95215 * 15 14 4 42 42 H 1.09004 * 110.42010 * 155.70560 * 15 14 4 43 43 H 1.09005 * 109.47676 * 300.00142 * 19 17 16 44 44 H 1.08999 * 109.47295 * 60.00021 * 19 17 16 45 45 H 0.96999 * 119.99886 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9639 -0.2814 -1.6201 6 7 1.0263 -0.8028 -2.2904 7 6 1.6321 -1.0086 -3.6128 8 6 0.5489 -1.0583 -4.6592 9 6 0.1066 -0.0306 -5.4208 10 7 -0.8562 -0.5265 -6.2061 11 7 -1.0001 -1.7784 -5.9483 12 7 -0.1774 -2.1394 -5.0265 13 6 -0.0528 -3.4876 -4.4669 14 6 2.3552 -2.1701 -0.6959 15 6 2.8567 -1.8499 0.7368 16 7 2.0300 -0.7141 1.1839 17 6 1.7754 -0.3845 2.4656 18 8 1.0785 0.5755 2.7180 19 6 2.3556 -1.2096 3.5853 20 16 1.8357 -0.5191 5.1756 21 6 2.6332 -1.6436 6.2729 22 1 3.2255 -2.4555 5.8775 23 6 2.5012 -1.4852 7.6455 24 7 1.7799 -0.4953 8.1274 25 14 3.3462 -2.6778 8.8088 26 1 4.7056 -2.1748 9.1318 27 1 2.5526 -2.7967 10.0583 28 1 3.4522 -4.0098 8.1611 29 1 -0.3634 -1.0275 0.0197 30 1 -0.3633 0.5307 0.8800 31 1 -0.3634 0.4967 -0.8996 32 1 0.3431 -1.5177 -2.0903 33 1 2.1843 -1.9484 -3.6171 34 1 2.3128 -0.1861 -3.8325 35 1 0.4615 0.9893 -5.3992 36 1 0.6783 -4.0542 -5.0435 37 1 0.2750 -3.4214 -3.4294 38 1 -1.0191 -3.9901 -4.5114 39 1 1.4500 -2.7765 -0.6651 40 1 3.1314 -2.6593 -1.2843 41 1 3.9090 -1.5669 0.7128 42 1 2.7086 -2.7082 1.3922 43 1 2.0000 -2.2366 3.5019 44 1 3.4436 -1.1955 3.5209 45 1 1.6879 -0.3845 9.0867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486073071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:39 Heat of formation + Delta-G solvation = 77.700748 kcal Electronic energy + Delta-G solvation = -26651.822282 eV Core-core repulsion = 22833.327476 eV Total energy + Delta-G solvation = -3818.494806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.65456 -40.31389 -38.00602 -35.83545 -34.88170 -32.47329 -32.45013 -31.37021 -30.39734 -28.61739 -28.32859 -26.21178 -25.52367 -24.94037 -23.11927 -22.97380 -21.26997 -20.78578 -18.96865 -17.92134 -17.66743 -17.15131 -16.80379 -16.35278 -16.08046 -15.36810 -15.16064 -14.94584 -14.83167 -14.22158 -14.07357 -13.84615 -13.74205 -13.67867 -13.43411 -13.32874 -12.98826 -12.74767 -12.63249 -12.52456 -12.37733 -11.91089 -11.89163 -11.56798 -11.28971 -11.10971 -11.08397 -11.05519 -10.91703 -10.78698 -10.51263 -9.84633 -9.65013 -9.35678 -9.09527 -8.97814 -8.55497 -8.26114 -6.53148 -6.24398 -3.95226 1.09996 1.88841 2.21344 2.82271 3.04407 3.19566 3.22118 3.27295 3.49625 3.64634 3.81858 3.99592 4.14698 4.17469 4.20797 4.32215 4.37921 4.54539 4.59508 4.68116 4.84292 4.91918 4.99337 5.02028 5.10336 5.10686 5.25648 5.35345 5.36818 5.42618 5.45286 5.59034 5.63217 5.80090 5.84264 5.88180 6.04015 6.08725 6.09194 6.32579 6.38873 6.54231 6.70436 7.56302 7.64417 8.12135 8.32081 8.55092 9.20733 10.82980 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029824 B = 0.001941 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.605410 B =14421.268720 C =14783.777742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.078 0.922 4 C 0.082 3.918 5 H 0.099 0.901 6 N -0.669 5.669 7 C 0.134 3.866 8 C -0.018 4.018 9 C -0.028 4.028 10 N -0.272 5.272 11 N -0.085 5.085 12 N -0.290 5.290 13 C 0.079 3.921 14 C -0.164 4.164 15 C 0.104 3.896 16 N -0.625 5.625 17 C 0.550 3.450 18 O -0.510 6.510 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.345 0.655 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.191 0.809 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 -6.863 -26.593 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.096 0.904 4 C -0.029 4.029 5 H 0.117 0.883 6 N -0.300 5.300 7 C 0.003 3.997 8 C -0.151 4.151 9 C -0.186 4.186 10 N -0.137 5.137 11 N -0.065 5.065 12 N -0.084 5.084 13 C -0.063 4.063 14 C -0.204 4.204 15 C -0.020 4.020 16 N -0.363 5.363 17 C 0.338 3.662 18 O -0.384 6.384 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.164 0.836 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.208 0.792 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.627 -5.113 -26.998 27.485 hybrid contribution 2.537 -2.752 1.353 3.980 sum 3.163 -7.865 -25.645 27.010 Atomic orbital electron populations 1.21957 0.94186 1.01668 1.03335 1.21354 0.95522 0.95784 0.83037 0.90446 1.22654 0.94243 0.94901 0.91052 0.88305 1.60478 1.15313 1.54093 1.00111 1.20373 0.91679 1.02147 0.85515 1.22052 1.01590 0.87800 1.03623 1.23416 0.97659 1.00736 0.96779 1.75126 1.16257 1.00582 1.21711 1.78339 1.12969 1.09135 1.06048 1.47242 1.24548 1.10480 1.26178 1.22269 1.05883 0.78435 0.99690 1.23553 1.02249 0.97777 0.96835 1.22195 0.95142 0.90054 0.94584 1.48600 1.52082 1.30647 1.04984 1.19977 0.80095 0.84800 0.81298 1.90703 1.37151 1.28043 1.82470 1.23515 1.03698 1.02456 1.00088 1.85422 1.67099 1.40216 0.90557 1.22848 1.36557 1.15878 0.93105 0.90985 1.24994 0.95240 0.95999 0.97362 1.70015 1.37244 1.29259 1.13668 0.86170 0.79228 0.80467 0.79638 1.20256 1.20729 1.19732 0.93643 0.91215 0.90565 0.83555 0.93547 0.87589 0.79213 0.88908 0.88797 0.87651 0.90534 0.89894 0.91218 0.90257 0.89489 0.89406 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.23 37.15 0.31 -1.51 16 2 C 0.15 1.60 3.48 -66.95 -0.23 1.37 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.08 0.52 3.11 -65.88 -0.21 0.31 16 5 H 0.10 0.52 7.86 -51.93 -0.41 0.12 16 6 N -0.67 -3.68 4.80 -106.05 -0.51 -4.19 16 7 C 0.13 0.54 5.56 -4.98 -0.03 0.51 16 8 C -0.02 -0.12 6.51 -82.09 -0.53 -0.66 16 9 C -0.03 -0.23 11.99 -17.74 -0.21 -0.45 16 10 N -0.27 -3.13 12.41 30.24 0.38 -2.76 16 11 N -0.09 -0.91 13.16 60.35 0.79 -0.12 16 12 N -0.29 -2.06 3.74 -63.79 -0.24 -2.29 16 13 C 0.08 0.21 11.14 59.85 0.67 0.88 16 14 C -0.16 -0.90 6.68 -24.47 -0.16 -1.07 16 15 C 0.10 0.93 6.69 -2.41 -0.02 0.92 16 16 N -0.62 -8.21 3.08 -162.88 -0.50 -8.71 16 17 C 0.55 10.17 7.65 -10.99 -0.08 10.09 16 18 O -0.51 -11.44 14.77 5.56 0.08 -11.36 16 19 C -0.15 -2.92 5.16 36.01 0.19 -2.74 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 25 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 29 H 0.04 0.51 7.93 -51.93 -0.41 0.10 16 30 H 0.07 1.08 6.77 -51.93 -0.35 0.73 16 31 H 0.08 0.81 7.40 -51.93 -0.38 0.43 16 32 H 0.34 1.90 7.38 -39.29 -0.29 1.61 16 33 H 0.05 0.12 8.04 -51.93 -0.42 -0.30 16 34 H 0.11 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.19 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.09 0.08 7.56 -51.93 -0.39 -0.31 16 38 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.08 0.41 7.79 -51.93 -0.40 0.01 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.72 7.48 -51.93 -0.39 0.34 16 43 H 0.09 1.60 7.85 -51.91 -0.41 1.20 16 44 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -37.20 385.00 -7.60 -44.80 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.78 Total: -3.12 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.12 Total: -5.13 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.65 Total: -43.28 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.20 -7.60 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486073071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.501 kcal (2) G-P(sol) polarization free energy of solvation -37.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds