Wall clock time and date at job start Tue Mar 31 2020 23:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.00529 * 2 1 4 4 C 1.54327 * 109.88118 * 238.90160 * 2 1 3 5 5 H 1.08999 * 110.72043 * 144.23721 * 4 2 1 6 6 N 1.46904 * 110.71734 * 21.14224 * 4 2 1 7 7 C 1.46904 * 110.99930 * 157.43959 * 6 4 2 8 8 C 1.50690 * 109.47320 * 179.97438 * 7 6 4 9 9 C 1.35351 * 126.91729 * 94.95512 * 8 7 6 10 10 N 1.33769 * 106.50107 * 180.02562 * 9 8 7 11 11 N 1.28629 * 108.88659 * 359.97438 * 10 9 8 12 12 N 1.28714 * 110.17964 * 0.02562 * 11 10 9 13 13 C 1.46502 * 125.87180 * 179.73472 * 12 11 10 14 14 C 1.55152 * 103.10684 * 262.68907 * 4 2 1 15 15 C 1.55128 * 101.48373 * 324.72038 * 14 4 2 16 16 N 1.47025 * 109.88257 * 121.09783 * 2 1 3 17 17 C 1.34767 * 125.64720 * 300.43714 * 16 2 1 18 18 O 1.21279 * 120.00465 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99930 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.47231 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00132 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00127 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99780 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00166 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99888 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46870 * 90.00069 * 25 23 21 27 27 H 1.48499 * 109.47620 * 210.00072 * 25 23 21 28 28 H 1.48497 * 109.47154 * 330.00436 * 25 23 21 29 29 H 1.09005 * 109.47533 * 181.09627 * 1 2 3 30 30 H 1.09000 * 109.46987 * 301.09269 * 1 2 3 31 31 H 1.08999 * 109.47245 * 61.09368 * 1 2 3 32 32 H 1.00898 * 110.99947 * 281.39281 * 6 4 2 33 33 H 1.09001 * 109.46826 * 60.00046 * 7 6 4 34 34 H 1.09003 * 109.46675 * 300.00022 * 7 6 4 35 35 H 1.08004 * 126.74797 * 0.05551 * 9 8 7 36 36 H 1.08997 * 109.47250 * 90.02202 * 13 12 11 37 37 H 1.09003 * 109.47080 * 210.02696 * 13 12 11 38 38 H 1.09006 * 109.46804 * 330.02557 * 13 12 11 39 39 H 1.08998 * 111.00511 * 82.65529 * 14 4 2 40 40 H 1.08994 * 111.01066 * 206.51181 * 14 4 2 41 41 H 1.08999 * 110.20350 * 277.95215 * 15 14 4 42 42 H 1.09004 * 110.42010 * 155.70560 * 15 14 4 43 43 H 1.09005 * 109.47676 * 300.00142 * 19 17 16 44 44 H 1.08999 * 109.47295 * 60.00021 * 19 17 16 45 45 H 0.96999 * 119.99886 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9639 -0.2814 -1.6201 6 7 1.0263 -0.8028 -2.2904 7 6 1.6321 -1.0086 -3.6128 8 6 0.5489 -1.0583 -4.6592 9 6 0.1066 -0.0306 -5.4208 10 7 -0.8562 -0.5265 -6.2061 11 7 -1.0001 -1.7784 -5.9483 12 7 -0.1774 -2.1394 -5.0265 13 6 -0.0528 -3.4876 -4.4669 14 6 2.3552 -2.1701 -0.6959 15 6 2.8567 -1.8499 0.7368 16 7 2.0300 -0.7141 1.1839 17 6 1.7754 -0.3845 2.4656 18 8 1.0785 0.5755 2.7180 19 6 2.3556 -1.2096 3.5853 20 16 1.8357 -0.5191 5.1756 21 6 2.6332 -1.6436 6.2729 22 1 3.2255 -2.4555 5.8775 23 6 2.5012 -1.4852 7.6455 24 7 1.7799 -0.4953 8.1274 25 14 3.3462 -2.6778 8.8088 26 1 4.7056 -2.1748 9.1318 27 1 2.5526 -2.7967 10.0583 28 1 3.4522 -4.0098 8.1611 29 1 -0.3634 -1.0275 0.0197 30 1 -0.3633 0.5307 0.8800 31 1 -0.3634 0.4967 -0.8996 32 1 0.3431 -1.5177 -2.0903 33 1 2.1843 -1.9484 -3.6171 34 1 2.3128 -0.1861 -3.8325 35 1 0.4615 0.9893 -5.3992 36 1 0.6783 -4.0542 -5.0435 37 1 0.2750 -3.4214 -3.4294 38 1 -1.0191 -3.9901 -4.5114 39 1 1.4500 -2.7765 -0.6651 40 1 3.1314 -2.6593 -1.2843 41 1 3.9090 -1.5669 0.7128 42 1 2.7086 -2.7082 1.3922 43 1 2.0000 -2.2366 3.5019 44 1 3.4436 -1.1955 3.5209 45 1 1.6879 -0.3845 9.0867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486073071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:38 Heat of formation + Delta-G solvation = 49.643764 kcal Electronic energy + Delta-G solvation = -26653.038924 eV Core-core repulsion = 22833.327476 eV Total energy + Delta-G solvation = -3819.711448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.21375 -41.30180 -39.08646 -36.53863 -35.40401 -34.59175 -33.30011 -32.15849 -31.34666 -29.71709 -28.80565 -27.66516 -26.85217 -25.56179 -23.95696 -23.55322 -21.74174 -21.58529 -20.21465 -19.52505 -18.30952 -17.99544 -17.64760 -17.19895 -16.91455 -16.88412 -16.30248 -16.04515 -15.75331 -15.67151 -14.93964 -14.58007 -14.50731 -14.27813 -14.22504 -14.12223 -13.76120 -13.67457 -13.62088 -13.46964 -13.15868 -13.10786 -12.96468 -12.89236 -12.63460 -12.50290 -12.41885 -11.93000 -11.76551 -11.70364 -11.63845 -11.14723 -11.02780 -10.82089 -10.27763 -10.21405 -9.66198 -9.36903 -8.68216 -8.34985 -6.13654 0.57784 1.24507 1.42321 1.45182 1.52644 1.55910 1.59581 1.61835 2.10078 2.27140 2.99102 3.09956 3.24850 3.42328 3.54003 3.61126 3.73942 3.92434 3.96123 4.11970 4.16203 4.22149 4.25633 4.27943 4.39876 4.43550 4.46679 4.55210 4.65887 4.69473 4.71111 4.76747 4.83756 4.92916 5.03288 5.11255 5.13391 5.26979 5.39330 5.40943 5.54252 5.65454 5.94900 6.19134 6.28733 6.45563 7.05997 7.18964 7.51739 8.74216 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029824 B = 0.001941 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.605410 B =14421.268720 C =14783.777742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.138 3.862 3 H 0.060 0.940 4 C 0.102 3.898 5 H 0.121 0.879 6 N -0.679 5.679 7 C 0.140 3.860 8 C -0.006 4.006 9 C -0.047 4.047 10 N -0.316 5.316 11 N -0.125 5.125 12 N -0.282 5.282 13 C 0.065 3.935 14 C -0.149 4.149 15 C 0.089 3.911 16 N -0.614 5.614 17 C 0.545 3.455 18 O -0.564 6.564 19 C -0.118 4.118 20 S -0.154 6.154 21 C -0.544 4.544 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.267 1.267 27 H -0.279 1.279 28 H -0.256 1.256 29 H 0.052 0.948 30 H 0.022 0.978 31 H 0.087 0.913 32 H 0.347 0.653 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.206 0.794 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 -9.877 -28.049 30.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.034 3.966 3 H 0.079 0.921 4 C -0.009 4.009 5 H 0.139 0.861 6 N -0.311 5.311 7 C 0.010 3.990 8 C -0.139 4.139 9 C -0.207 4.207 10 N -0.180 5.180 11 N -0.104 5.104 12 N -0.077 5.077 13 C -0.074 4.074 14 C -0.188 4.188 15 C -0.034 4.034 16 N -0.350 5.350 17 C 0.333 3.667 18 O -0.442 6.442 19 C -0.270 4.270 20 S 0.073 5.927 21 C -0.692 4.692 22 H 0.101 0.899 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.180 1.180 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.096 0.904 34 H 0.138 0.862 35 H 0.223 0.777 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.409 -8.184 -28.533 29.878 hybrid contribution 1.686 -1.818 1.690 3.000 sum 5.094 -10.002 -26.843 29.095 Atomic orbital electron populations 1.21825 0.95198 1.01449 1.01590 1.21588 0.94758 0.95853 0.84395 0.92142 1.22467 0.94595 0.94906 0.88949 0.86096 1.60322 1.15442 1.54747 1.00559 1.20491 0.90681 1.04368 0.83440 1.22424 1.01289 0.86968 1.03260 1.23880 0.97533 1.02184 0.97066 1.75054 1.18038 1.01417 1.23512 1.78253 1.14869 1.09145 1.08097 1.47595 1.23265 1.11923 1.24911 1.22700 1.06841 0.76629 1.01239 1.23568 1.03653 0.97218 0.94350 1.22639 0.95506 0.88332 0.96889 1.48517 1.51209 1.31554 1.03673 1.19730 0.79919 0.84141 0.82925 1.90687 1.39669 1.30231 1.83647 1.23300 1.04564 1.02795 0.96292 1.85637 1.68517 1.42522 0.96023 1.23182 1.36491 1.15925 0.93624 0.89850 1.26155 0.95817 0.97928 0.99381 1.70189 1.38997 1.31486 1.14132 0.84940 0.77965 0.78187 0.76802 1.19266 1.20406 1.18026 0.92902 0.95865 0.89409 0.83356 0.90422 0.86241 0.77689 0.86864 0.86264 0.87539 0.89962 0.85970 0.89481 0.90228 0.87748 0.87643 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.23 71.98 0.59 -2.74 16 2 C 0.14 2.77 3.48 45.34 0.16 2.93 16 3 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 4 C 0.10 0.82 3.11 46.10 0.14 0.97 16 5 H 0.12 0.58 7.86 -2.39 -0.02 0.56 16 6 N -0.68 -4.64 4.80 -489.44 -2.35 -6.99 16 7 C 0.14 0.45 5.56 85.55 0.48 0.92 16 8 C -0.01 -0.06 6.51 41.35 0.27 0.21 16 9 C -0.05 -0.75 11.99 83.73 1.00 0.25 16 10 N -0.32 -7.35 12.41 -58.25 -0.72 -8.07 16 11 N -0.12 -2.63 13.16 37.02 0.49 -2.14 16 12 N -0.28 -3.39 3.74 -355.72 -1.33 -4.72 16 13 C 0.07 0.13 11.14 127.77 1.42 1.55 16 14 C -0.15 -0.79 6.68 32.06 0.21 -0.57 16 15 C 0.09 1.23 6.69 86.93 0.58 1.81 16 16 N -0.61 -15.17 3.08 -787.63 -2.43 -17.60 16 17 C 0.54 20.36 7.65 87.66 0.67 21.03 16 18 O -0.56 -26.66 14.77 -3.03 -0.04 -26.71 16 19 C -0.12 -4.68 5.16 71.24 0.37 -4.31 16 20 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 21 C -0.54 -30.82 9.50 67.95 0.65 -30.18 16 22 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.67 5.49 84.86 0.47 1.14 16 24 N -0.91 -55.94 13.22 21.65 0.29 -55.66 16 25 Si 1.00 43.02 29.55 68.60 2.03 45.04 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 28 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 29 H 0.05 1.12 7.93 -2.38 -0.02 1.10 16 30 H 0.02 0.75 6.77 -2.39 -0.02 0.73 16 31 H 0.09 1.81 7.40 -2.39 -0.02 1.79 16 32 H 0.35 2.33 7.38 -89.70 -0.66 1.67 16 33 H 0.08 -0.15 8.04 -2.39 -0.02 -0.17 16 34 H 0.12 0.16 8.08 -2.39 -0.02 0.14 16 35 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.12 -0.37 7.56 -2.39 -0.02 -0.39 16 38 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 39 H 0.08 0.42 7.79 -2.39 -0.02 0.40 16 40 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.15 7.48 -2.39 -0.02 1.13 16 43 H 0.10 3.73 7.85 -2.39 -0.02 3.71 16 44 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -88.81 385.00 2.12 -86.69 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.34 Total: 6.88 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 7.01 Total: -6.99 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -6.06 Total: -95.17 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.04 Total: -26.71 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -88.81 2.12 -86.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486073071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.335 kcal (2) G-P(sol) polarization free energy of solvation -88.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds