Wall clock time and date at job start Tue Mar 31 2020 23:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47105 * 2 1 4 4 O 1.45198 * 109.47203 * 120.00680 * 2 1 3 5 5 C 1.34229 * 116.99543 * 269.99718 * 4 2 1 6 6 O 1.20824 * 120.00120 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99904 * 180.02562 * 5 4 2 8 8 C 1.50707 * 109.63575 * 299.57566 * 7 5 4 9 9 O 1.20831 * 119.99536 * 114.04651 * 8 7 5 10 10 O 1.34223 * 120.00575 * 294.04308 * 8 7 5 11 11 C 1.53023 * 109.64268 * 59.99818 * 7 5 4 12 12 C 1.50066 * 110.14485 * 169.12382 * 11 7 5 13 13 C 1.29447 * 124.07937 * 342.86937 * 12 11 7 14 14 C 1.50066 * 124.07167 * 0.44459 * 13 12 11 15 15 C 1.53007 * 110.15719 * 342.91016 * 14 13 12 16 16 C 1.50704 * 109.46971 * 240.00328 * 2 1 3 17 17 O 1.21279 * 119.99919 * 260.20279 * 16 2 1 18 18 N 1.34768 * 120.00251 * 80.19541 * 16 2 1 19 19 C 1.46500 * 120.00081 * 355.16120 * 18 16 2 20 20 C 1.46503 * 120.00489 * 175.15674 * 18 16 2 21 21 C 1.50704 * 109.46704 * 89.99944 * 20 18 16 22 22 H 1.07998 * 120.00458 * 0.02562 * 21 20 18 23 23 C 1.37882 * 119.99700 * 180.02562 * 21 20 18 24 24 N 1.31507 * 120.00252 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99831 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47151 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46989 * 120.00070 * 25 23 21 28 28 H 1.48498 * 109.46928 * 239.99910 * 25 23 21 29 29 H 1.09003 * 109.47077 * 60.03004 * 1 2 3 30 30 H 1.09004 * 109.47678 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47207 * 300.03255 * 1 2 3 32 32 H 0.96698 * 117.00363 * 180.02562 * 10 8 7 33 33 H 1.09003 * 109.35821 * 289.32710 * 11 7 5 34 34 H 1.08997 * 109.35551 * 48.91316 * 11 7 5 35 35 H 1.08005 * 117.96299 * 162.89230 * 12 11 7 36 36 H 1.07995 * 117.96133 * 180.47279 * 13 12 11 37 37 H 1.08998 * 109.36025 * 103.10322 * 14 13 12 38 38 H 1.09001 * 109.35748 * 222.82349 * 14 13 12 39 39 H 1.09002 * 109.62995 * 289.72194 * 15 14 13 40 40 H 1.09003 * 109.65171 * 169.09941 * 15 14 13 41 41 H 1.09000 * 109.47188 * 95.45950 * 19 18 16 42 42 H 1.09001 * 109.47288 * 215.46457 * 19 18 16 43 43 H 1.09001 * 109.47120 * 335.45911 * 19 18 16 44 44 H 1.08995 * 109.47523 * 210.00269 * 20 18 16 45 45 H 1.08995 * 109.46841 * 330.00705 * 20 18 16 46 46 H 0.96999 * 120.00891 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0638 2.2810 6 8 1.9983 1.2517 2.2503 7 6 2.7194 -0.5773 3.5491 8 6 1.7368 -1.6220 4.0119 9 8 2.0523 -2.7884 4.0158 10 8 0.5113 -1.2570 4.4198 11 6 4.0801 -1.2286 3.2922 12 6 4.7113 -1.6364 4.5911 13 6 4.3434 -1.1884 5.7485 14 6 3.2278 -0.2059 5.9539 15 6 2.8908 0.4925 4.6349 16 6 2.0323 -0.7104 -1.2305 17 8 2.4029 -1.8628 -1.1566 18 7 2.0695 -0.0651 -2.4131 19 6 1.5240 1.2898 -2.5258 20 6 2.6557 -0.7185 -3.5861 21 6 1.5855 -1.4823 -4.3227 22 1 0.5703 -1.4808 -3.9543 23 6 1.9026 -2.1830 -5.4671 24 7 3.1389 -2.1853 -5.9154 25 14 0.5760 -3.1292 -6.3806 26 1 -0.7214 -2.9671 -5.6765 27 1 0.4568 -2.6033 -7.7643 28 1 0.9379 -4.5686 -6.4275 29 1 -0.3633 0.5134 -0.8903 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5143 0.8897 32 1 -0.0838 -1.9626 4.7080 33 1 3.9463 -2.1089 2.6634 34 1 4.7301 -0.5180 2.7818 35 1 5.5234 -2.3476 4.5582 36 1 4.8725 -1.5435 6.6205 37 1 2.3459 -0.7318 6.3195 38 1 3.5337 0.5399 6.6877 39 1 3.7019 1.1669 4.3600 40 1 1.9637 1.0552 4.7445 41 1 2.3280 2.0163 -2.4077 42 1 1.0619 1.4152 -3.5050 43 1 0.7760 1.4461 -1.7485 44 1 3.0835 0.0358 -4.2464 45 1 3.4378 -1.4067 -3.2656 46 1 3.3619 -2.6780 -6.7207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589158182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:01 Heat of formation + Delta-G solvation = -187.628408 kcal Electronic energy + Delta-G solvation = -30852.741231 eV Core-core repulsion = 26515.402516 eV Total energy + Delta-G solvation = -4337.338715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81788 -40.36198 -39.04945 -38.07031 -36.65000 -36.28341 -34.91983 -32.95657 -32.40391 -31.51930 -31.11728 -27.79710 -26.19863 -25.70213 -24.55673 -23.55862 -23.42035 -22.10770 -20.59098 -18.97793 -18.86099 -18.26639 -17.88009 -17.17902 -16.57600 -16.56538 -16.15136 -16.00374 -15.74207 -15.34175 -14.68796 -14.54938 -14.41661 -14.04056 -13.89586 -13.67424 -13.41927 -13.20555 -13.15669 -12.87651 -12.67822 -12.43294 -12.20307 -12.11721 -12.01359 -11.83578 -11.74734 -11.49799 -11.35529 -11.26420 -11.04649 -10.92085 -10.82349 -10.74201 -10.61605 -10.44734 -10.18550 -9.65581 -9.30417 -8.96049 -8.46798 -7.75879 -6.07444 -4.12210 1.62435 1.86000 2.00580 2.29872 2.61836 3.19637 3.28622 3.36606 3.40609 3.74086 3.97042 4.12355 4.39045 4.42578 4.61210 4.71616 4.77831 4.88751 4.90728 4.94697 5.02640 5.05796 5.27377 5.27939 5.37941 5.41565 5.43927 5.59794 5.63532 5.67889 5.72105 5.78990 5.84875 6.02766 6.14851 6.19150 6.22071 6.27893 6.62809 6.94464 7.35158 7.39339 7.46886 7.54558 7.88316 8.17844 8.25191 8.81376 8.96221 9.52834 11.00855 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002763 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.413709 B =10132.737140 C =10333.132824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 H 0.105 0.895 4 O -0.319 6.319 5 C 0.476 3.524 6 O -0.487 6.487 7 C -0.036 4.036 8 C 0.497 3.503 9 O -0.481 6.481 10 O -0.511 6.511 11 C -0.078 4.078 12 C -0.133 4.133 13 C -0.170 4.170 14 C -0.095 4.095 15 C -0.098 4.098 16 C 0.507 3.493 17 O -0.514 6.514 18 N -0.596 5.596 19 C 0.071 3.929 20 C 0.247 3.753 21 C -0.527 4.527 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.415 0.585 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 8.327 23.420 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 H 0.123 0.877 4 O -0.234 6.234 5 C 0.317 3.683 6 O -0.374 6.374 7 C -0.039 4.039 8 C 0.336 3.664 9 O -0.366 6.366 10 O -0.324 6.324 11 C -0.115 4.115 12 C -0.151 4.151 13 C -0.188 4.188 14 C -0.132 4.132 15 C -0.135 4.135 16 C 0.291 3.709 17 O -0.389 6.389 18 N -0.330 5.330 19 C -0.072 4.072 20 C 0.128 3.872 21 C -0.565 4.565 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.208 1.208 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.274 0.726 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.288 7.962 23.104 24.471 hybrid contribution -1.136 -0.898 -0.527 1.541 sum -2.424 7.064 22.577 23.781 Atomic orbital electron populations 1.22205 0.92004 1.04394 1.03782 1.22792 0.96220 0.97407 0.82466 0.87704 1.86650 1.75988 1.41253 1.19530 1.22809 0.74641 0.85870 0.85023 1.90664 1.46894 1.15896 1.83951 1.20537 0.95140 0.95946 0.92264 1.22347 0.81207 0.88610 0.74200 1.90767 1.77348 1.19379 1.49110 1.84505 1.25140 1.45598 1.77112 1.20528 0.90564 1.02416 0.98011 1.21914 1.00321 0.99699 0.93207 1.22019 0.99312 0.99611 0.97893 1.20544 0.97655 0.97858 0.97128 1.21652 1.04816 0.95334 0.91717 1.19725 0.80347 0.87125 0.83716 1.90724 1.47050 1.16131 1.84996 1.48095 1.59112 1.15575 1.10171 1.21876 0.98216 0.83850 1.03308 1.19357 0.94347 0.93054 0.80400 1.21444 0.95459 1.30729 1.08907 0.92307 1.24938 0.95649 0.96305 0.97214 1.69931 1.17688 1.42372 1.23339 0.86427 0.81779 0.79834 0.79293 1.19785 1.20951 1.20828 0.89286 0.90600 0.91108 0.72565 0.87567 0.88464 0.86554 0.87222 0.90793 0.89441 0.89042 0.88915 0.93237 0.90296 0.91968 0.94549 0.93787 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.24 37.16 0.34 -1.97 16 2 C 0.07 1.15 2.13 -27.88 -0.06 1.09 16 3 H 0.11 1.55 6.34 -51.93 -0.33 1.22 16 4 O -0.32 -5.37 9.36 -45.65 -0.43 -5.80 16 5 C 0.48 6.74 6.50 36.01 0.23 6.97 16 6 O -0.49 -7.13 15.12 -18.75 -0.28 -7.42 16 7 C -0.04 -0.43 0.68 -156.59 -0.11 -0.53 16 8 C 0.50 6.00 5.13 36.01 0.18 6.19 16 9 O -0.48 -7.01 16.09 -18.75 -0.30 -7.31 16 10 O -0.51 -4.69 13.24 -39.24 -0.52 -5.21 16 11 C -0.08 -0.89 4.48 -28.18 -0.13 -1.02 16 12 C -0.13 -1.29 9.09 -35.90 -0.33 -1.61 16 13 C -0.17 -1.43 9.62 -35.90 -0.35 -1.77 16 14 C -0.10 -0.71 5.59 -28.19 -0.16 -0.87 16 15 C -0.10 -0.88 4.21 -26.52 -0.11 -0.99 16 16 C 0.51 10.82 6.93 -10.99 -0.08 10.74 16 17 O -0.51 -13.37 16.25 -13.18 -0.21 -13.58 16 18 N -0.60 -12.57 2.86 -182.95 -0.52 -13.09 16 19 C 0.07 1.10 9.94 59.85 0.59 1.70 16 20 C 0.25 6.40 5.15 -5.19 -0.03 6.38 16 21 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 22 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.44 13.28 55.43 0.74 -25.70 16 25 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 29 H 0.09 1.12 6.11 -51.93 -0.32 0.80 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.41 1.98 9.10 45.56 0.41 2.39 16 33 H 0.11 1.42 7.66 -51.93 -0.40 1.02 16 34 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.11 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.07 0.55 7.40 -51.93 -0.38 0.17 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 43 H 0.06 0.79 4.47 -51.93 -0.23 0.55 16 44 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 45 H 0.04 1.29 7.49 -51.93 -0.39 0.90 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -36.34 384.27 -6.97 -43.31 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.81 Total: 1.43 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -0.40 Total: 10.78 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.21 Total: -38.79 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.75 Total: -39.31 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.34 -6.97 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589158182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.319 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds