Wall clock time and date at job start Tue Mar 31 2020 23:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47105 * 2 1 4 4 O 1.45198 * 109.47203 * 120.00680 * 2 1 3 5 5 C 1.34229 * 116.99543 * 269.99718 * 4 2 1 6 6 O 1.20824 * 120.00120 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99904 * 180.02562 * 5 4 2 8 8 C 1.50707 * 109.63575 * 299.57566 * 7 5 4 9 9 O 1.20831 * 119.99536 * 114.04651 * 8 7 5 10 10 O 1.34223 * 120.00575 * 294.04308 * 8 7 5 11 11 C 1.53023 * 109.64268 * 59.99818 * 7 5 4 12 12 C 1.50066 * 110.14485 * 169.12382 * 11 7 5 13 13 C 1.29447 * 124.07937 * 342.86937 * 12 11 7 14 14 C 1.50066 * 124.07167 * 0.44459 * 13 12 11 15 15 C 1.53007 * 110.15719 * 342.91016 * 14 13 12 16 16 C 1.50704 * 109.46971 * 240.00328 * 2 1 3 17 17 O 1.21279 * 119.99919 * 260.20279 * 16 2 1 18 18 N 1.34768 * 120.00251 * 80.19541 * 16 2 1 19 19 C 1.46500 * 120.00081 * 355.16120 * 18 16 2 20 20 C 1.46503 * 120.00489 * 175.15674 * 18 16 2 21 21 C 1.50704 * 109.46704 * 89.99944 * 20 18 16 22 22 H 1.07998 * 120.00458 * 0.02562 * 21 20 18 23 23 C 1.37882 * 119.99700 * 180.02562 * 21 20 18 24 24 N 1.31507 * 120.00252 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99831 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47151 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46989 * 120.00070 * 25 23 21 28 28 H 1.48498 * 109.46928 * 239.99910 * 25 23 21 29 29 H 1.09003 * 109.47077 * 60.03004 * 1 2 3 30 30 H 1.09004 * 109.47678 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47207 * 300.03255 * 1 2 3 32 32 H 0.96698 * 117.00363 * 180.02562 * 10 8 7 33 33 H 1.09003 * 109.35821 * 289.32710 * 11 7 5 34 34 H 1.08997 * 109.35551 * 48.91316 * 11 7 5 35 35 H 1.08005 * 117.96299 * 162.89230 * 12 11 7 36 36 H 1.07995 * 117.96133 * 180.47279 * 13 12 11 37 37 H 1.08998 * 109.36025 * 103.10322 * 14 13 12 38 38 H 1.09001 * 109.35748 * 222.82349 * 14 13 12 39 39 H 1.09002 * 109.62995 * 289.72194 * 15 14 13 40 40 H 1.09003 * 109.65171 * 169.09941 * 15 14 13 41 41 H 1.09000 * 109.47188 * 95.45950 * 19 18 16 42 42 H 1.09001 * 109.47288 * 215.46457 * 19 18 16 43 43 H 1.09001 * 109.47120 * 335.45911 * 19 18 16 44 44 H 1.08995 * 109.47523 * 210.00269 * 20 18 16 45 45 H 1.08995 * 109.46841 * 330.00705 * 20 18 16 46 46 H 0.96999 * 120.00891 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0638 2.2810 6 8 1.9983 1.2517 2.2503 7 6 2.7194 -0.5773 3.5491 8 6 1.7368 -1.6220 4.0119 9 8 2.0523 -2.7884 4.0158 10 8 0.5113 -1.2570 4.4198 11 6 4.0801 -1.2286 3.2922 12 6 4.7113 -1.6364 4.5911 13 6 4.3434 -1.1884 5.7485 14 6 3.2278 -0.2059 5.9539 15 6 2.8908 0.4925 4.6349 16 6 2.0323 -0.7104 -1.2305 17 8 2.4029 -1.8628 -1.1566 18 7 2.0695 -0.0651 -2.4131 19 6 1.5240 1.2898 -2.5258 20 6 2.6557 -0.7185 -3.5861 21 6 1.5855 -1.4823 -4.3227 22 1 0.5703 -1.4808 -3.9543 23 6 1.9026 -2.1830 -5.4671 24 7 3.1389 -2.1853 -5.9154 25 14 0.5760 -3.1292 -6.3806 26 1 -0.7214 -2.9671 -5.6765 27 1 0.4568 -2.6033 -7.7643 28 1 0.9379 -4.5686 -6.4275 29 1 -0.3633 0.5134 -0.8903 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5143 0.8897 32 1 -0.0838 -1.9626 4.7080 33 1 3.9463 -2.1089 2.6634 34 1 4.7301 -0.5180 2.7818 35 1 5.5234 -2.3476 4.5582 36 1 4.8725 -1.5435 6.6205 37 1 2.3459 -0.7318 6.3195 38 1 3.5337 0.5399 6.6877 39 1 3.7019 1.1669 4.3600 40 1 1.9637 1.0552 4.7445 41 1 2.3280 2.0163 -2.4077 42 1 1.0619 1.4152 -3.5050 43 1 0.7760 1.4461 -1.7485 44 1 3.0835 0.0358 -4.2464 45 1 3.4378 -1.4067 -3.2656 46 1 3.3619 -2.6780 -6.7207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589158182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:00 Heat of formation + Delta-G solvation = -211.179216 kcal Electronic energy + Delta-G solvation = -30853.762471 eV Core-core repulsion = 26515.402516 eV Total energy + Delta-G solvation = -4338.359955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.81645 -41.53675 -40.54071 -38.95319 -37.81534 -37.21104 -36.71425 -34.89672 -33.55350 -32.63950 -31.89782 -29.70465 -27.65509 -26.67471 -25.96958 -24.91865 -24.27060 -23.49475 -21.59989 -20.50344 -19.84988 -19.14259 -18.84910 -18.71717 -18.40806 -17.73870 -17.45289 -17.14842 -16.91182 -16.60155 -16.27280 -16.17014 -15.40407 -15.16473 -14.85995 -14.65238 -14.54335 -14.36635 -14.29665 -14.10886 -13.90313 -13.65350 -13.61397 -13.42082 -13.33175 -13.10577 -12.91360 -12.75029 -12.71884 -12.68445 -12.50832 -12.24793 -12.21466 -12.06920 -11.90250 -11.70654 -11.58009 -11.35164 -10.68221 -10.66040 -9.99035 -9.55354 -8.24654 -6.38864 0.58522 0.78689 1.20595 1.32316 1.35816 1.38606 1.49541 1.58340 1.78325 2.23480 2.39603 3.05677 3.11378 3.18946 3.33724 3.45583 3.67516 3.76042 3.89704 4.04046 4.13585 4.20289 4.21594 4.42790 4.45510 4.47724 4.54087 4.62699 4.64601 4.82131 4.84249 4.89713 4.94077 5.03617 5.05191 5.08017 5.14679 5.17788 5.39886 5.49574 5.61508 5.75607 5.93989 6.01808 6.26524 6.56164 6.69775 6.77370 7.17113 7.34035 8.83147 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002763 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.413709 B =10132.737140 C =10333.132824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 H 0.128 0.872 4 O -0.343 6.343 5 C 0.476 3.524 6 O -0.489 6.489 7 C -0.039 4.039 8 C 0.500 3.500 9 O -0.514 6.514 10 O -0.502 6.502 11 C -0.078 4.078 12 C -0.157 4.157 13 C -0.158 4.158 14 C -0.095 4.095 15 C -0.094 4.094 16 C 0.499 3.501 17 O -0.575 6.575 18 N -0.600 5.600 19 C 0.064 3.936 20 C 0.260 3.740 21 C -0.542 4.542 22 H 0.055 0.945 23 C 0.008 3.992 24 N -0.928 5.928 25 Si 0.968 3.032 26 H -0.266 1.266 27 H -0.268 1.268 28 H -0.283 1.283 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.434 0.566 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.033 0.967 45 H -0.002 1.002 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 10.208 25.153 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 H 0.146 0.854 4 O -0.259 6.259 5 C 0.318 3.682 6 O -0.376 6.376 7 C -0.041 4.041 8 C 0.341 3.659 9 O -0.401 6.401 10 O -0.317 6.317 11 C -0.115 4.115 12 C -0.175 4.175 13 C -0.176 4.176 14 C -0.131 4.131 15 C -0.131 4.131 16 C 0.285 3.715 17 O -0.455 6.455 18 N -0.332 5.332 19 C -0.078 4.078 20 C 0.139 3.861 21 C -0.581 4.581 22 H 0.074 0.926 23 C -0.191 4.191 24 N -0.568 5.568 25 Si 0.792 3.208 26 H -0.190 1.190 27 H -0.193 1.193 28 H -0.210 1.210 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.297 0.703 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.096 0.904 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.051 0.949 45 H 0.016 0.984 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.112 9.911 24.858 26.941 hybrid contribution -0.569 -1.441 -1.012 1.850 sum -3.681 8.471 23.847 25.573 Atomic orbital electron populations 1.22231 0.89653 1.04113 1.05829 1.22691 0.97724 0.97114 0.80382 0.85438 1.86666 1.76527 1.42439 1.20239 1.23242 0.74203 0.85860 0.84905 1.90646 1.47059 1.15865 1.84014 1.20709 0.94868 0.96736 0.91788 1.22409 0.81825 0.88078 0.73580 1.90760 1.78093 1.20616 1.50643 1.84462 1.24307 1.46418 1.76464 1.20467 0.91013 1.01272 0.98785 1.21897 1.01407 1.01232 0.92933 1.22306 0.98848 0.98611 0.97850 1.20638 0.97427 0.98240 0.96814 1.21737 1.05383 0.94627 0.91372 1.20624 0.79117 0.86647 0.85086 1.90686 1.49700 1.19000 1.86092 1.48085 1.58686 1.17451 1.08955 1.22214 0.99874 0.81047 1.04625 1.18852 0.93127 0.92304 0.81801 1.21706 0.95626 1.31362 1.09361 0.92648 1.25853 0.97963 0.97160 0.98159 1.70043 1.19628 1.43164 1.23927 0.85362 0.78942 0.77984 0.78491 1.19030 1.19276 1.20951 0.87608 0.92114 0.88550 0.70317 0.90705 0.88117 0.86196 0.85310 0.90417 0.86607 0.88376 0.88390 0.90684 0.90366 0.88557 0.94881 0.98396 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 9.24 71.98 0.67 -3.47 16 2 C 0.08 2.53 2.13 29.85 0.06 2.59 16 3 H 0.13 3.48 6.34 -2.39 -0.02 3.46 16 4 O -0.34 -11.58 9.36 -45.29 -0.42 -12.01 16 5 C 0.48 13.05 6.50 71.24 0.46 13.52 16 6 O -0.49 -13.25 15.12 21.97 0.33 -12.92 16 7 C -0.04 -0.88 0.68 -53.53 -0.04 -0.91 16 8 C 0.50 11.73 5.13 71.24 0.37 12.09 16 9 O -0.51 -15.14 16.09 21.95 0.35 -14.79 16 10 O -0.50 -8.26 13.24 -51.35 -0.68 -8.94 16 11 C -0.08 -1.84 4.48 29.66 0.13 -1.70 16 12 C -0.16 -2.98 9.09 27.03 0.25 -2.73 16 13 C -0.16 -2.34 9.62 27.03 0.26 -2.08 16 14 C -0.09 -1.14 5.59 29.65 0.17 -0.97 16 15 C -0.09 -1.48 4.21 30.73 0.13 -1.35 16 16 C 0.50 21.77 6.93 87.66 0.61 22.38 16 17 O -0.58 -31.64 16.25 14.89 0.24 -31.40 16 18 N -0.60 -25.57 2.86 -851.14 -2.43 -28.00 16 19 C 0.06 1.86 9.94 127.77 1.27 3.13 16 20 C 0.26 14.03 5.15 85.63 0.44 14.47 16 21 C -0.54 -31.21 9.39 25.60 0.24 -30.97 16 22 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 23 C 0.01 0.44 5.46 84.66 0.46 0.91 16 24 N -0.93 -56.13 13.28 21.45 0.28 -55.85 16 25 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 29 H 0.11 2.32 6.11 -2.39 -0.01 2.31 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.43 3.30 9.10 -74.06 -0.67 2.62 16 33 H 0.07 2.19 7.66 -2.39 -0.02 2.17 16 34 H 0.10 2.15 8.10 -2.39 -0.02 2.13 16 35 H 0.12 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.08 0.93 7.40 -2.39 -0.02 0.91 16 38 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.10 1.42 8.12 -2.39 -0.02 1.40 16 40 H 0.10 1.46 7.90 -2.39 -0.02 1.44 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 2.31 8.11 -2.39 -0.02 2.29 16 43 H 0.10 2.13 4.47 -2.39 -0.01 2.11 16 44 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 45 H 0.00 -0.13 7.49 -2.39 -0.02 -0.15 16 46 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -82.47 384.27 5.52 -76.95 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.34 Total: 15.02 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 5.48 Total: 24.88 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -2.15 Total: -83.85 kcal Atomic # 8 Polarization: -79.87 SS G_CDS: -0.18 Total: -80.05 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -82.47 5.52 -76.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589158182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.228 kcal (2) G-P(sol) polarization free energy of solvation -82.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds