Wall clock time and date at job start Tue Mar 31 2020 22:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30832 * 125.96108 * 2 1 4 4 C 1.33244 * 109.83031 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52726 * 179.73720 * 4 3 2 6 6 N 1.46905 * 109.47232 * 89.99919 * 5 4 3 7 7 C 1.46899 * 111.00054 * 180.02562 * 6 5 4 8 8 H 1.08994 * 112.85120 * 23.79838 * 7 6 5 9 9 C 1.53780 * 113.61365 * 155.00355 * 7 6 5 10 10 C 1.53784 * 87.08301 * 139.97984 * 9 7 6 11 11 H 1.08996 * 113.61205 * 220.01920 * 10 9 7 12 12 C 1.52999 * 113.61667 * 89.19435 * 10 9 7 13 13 N 1.46498 * 109.46859 * 174.99955 * 12 10 9 14 14 C 1.34779 * 119.99906 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00034 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00083 * 180.02562 * 14 13 12 17 17 S 1.80996 * 109.47236 * 179.97438 * 16 14 13 18 18 C 1.76206 * 100.00192 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99420 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00047 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00029 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47366 * 89.99719 * 22 20 18 24 24 H 1.48506 * 109.47092 * 210.00001 * 22 20 18 25 25 H 1.48499 * 109.47202 * 329.99792 * 22 20 18 26 26 C 1.53784 * 113.60996 * 252.49552 * 7 6 5 27 27 N 1.30715 * 108.94545 * 359.97438 * 4 3 2 28 28 N 1.34430 * 125.96160 * 179.97438 * 2 1 3 29 29 H 0.96996 * 126.82506 * 0.02562 * 28 2 1 30 30 H 1.08992 * 109.47113 * 90.02117 * 1 2 3 31 31 H 1.09000 * 109.46726 * 210.02437 * 1 2 3 32 32 H 1.09002 * 109.46654 * 330.02426 * 1 2 3 33 33 H 1.09003 * 109.47217 * 209.99434 * 5 4 3 34 34 H 1.09001 * 109.47325 * 330.00319 * 5 4 3 35 35 H 1.00906 * 110.99974 * 56.04407 * 6 5 4 36 36 H 1.09004 * 113.61033 * 254.52555 * 9 7 6 37 37 H 1.08999 * 113.61799 * 25.34118 * 9 7 6 38 38 H 1.08997 * 109.47158 * 294.99861 * 12 10 9 39 39 H 1.08997 * 109.46962 * 55.00137 * 12 10 9 40 40 H 0.97000 * 119.99984 * 0.02562 * 13 12 10 41 41 H 1.09009 * 109.47138 * 299.99544 * 16 14 13 42 42 H 1.08997 * 109.47403 * 59.99730 * 16 14 13 43 43 H 0.97001 * 120.00601 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.61860 * 334.56623 * 26 7 6 45 45 H 1.09008 * 113.61541 * 105.47013 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7372 1.6236 -0.0049 6 7 5.1226 1.9339 1.3784 7 6 6.2740 2.8455 1.4122 8 1 6.3725 3.4370 0.5020 9 6 6.3618 3.6793 2.7014 10 6 7.8814 3.4479 2.6542 11 1 8.3246 3.2577 3.6316 12 6 8.6387 4.5101 1.8549 13 7 10.0796 4.2713 1.9679 14 6 10.9493 5.0885 1.3417 15 8 10.5391 6.0214 0.6842 16 6 12.4316 4.8425 1.4575 17 16 13.3275 6.0992 0.5121 18 6 14.9856 5.5857 0.8148 19 1 15.1788 4.7210 1.4324 20 6 16.0434 6.2924 0.2596 21 7 17.2820 5.9084 0.4853 22 14 15.7091 7.7884 -0.8080 23 1 15.6679 9.0046 0.0430 24 1 16.7890 7.9271 -1.8179 25 1 14.4046 7.6226 -1.4980 26 6 7.5824 2.1690 1.8541 27 7 3.6195 -0.6168 0.0015 28 7 2.2964 -1.0881 0.0005 29 1 2.0094 -2.0146 0.0006 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 5.5739 1.1486 -0.5172 34 1 4.4696 2.5447 -0.5227 35 1 5.3132 1.0905 1.8985 36 1 6.0746 4.7222 2.5672 37 1 5.8740 3.2128 3.5573 38 1 8.3425 4.4563 0.8073 39 1 8.4022 5.4985 2.2489 40 1 10.4077 3.5249 2.4935 41 1 12.7280 4.8957 2.5052 42 1 12.6678 3.8544 1.0628 43 1 18.0212 6.4025 0.0976 44 1 7.4297 1.2889 2.4787 45 1 8.2807 1.9926 1.0359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688921886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:53 Heat of formation + Delta-G solvation = 63.683295 kcal Electronic energy + Delta-G solvation = -25053.121961 eV Core-core repulsion = 21234.019312 eV Total energy + Delta-G solvation = -3819.102649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.60235 -40.14606 -38.85246 -35.71740 -34.09561 -32.90193 -32.69152 -32.42575 -29.93065 -28.78684 -27.35008 -25.98107 -25.75968 -25.45353 -22.84633 -21.88627 -20.93989 -20.45621 -19.28099 -18.36346 -17.75747 -16.80845 -16.35949 -16.22504 -16.00041 -15.55865 -15.17553 -15.13435 -14.92286 -14.32439 -14.12761 -13.94030 -13.78564 -13.45371 -13.36824 -13.29405 -12.97636 -12.78268 -12.66886 -12.49695 -12.34380 -12.19810 -11.75196 -11.40054 -11.23864 -10.99437 -10.74868 -10.66436 -10.57887 -10.48436 -10.45592 -9.98218 -9.84100 -9.48998 -9.00068 -8.92044 -8.77929 -8.48297 -6.90134 -6.27645 -3.99257 1.07570 2.11786 2.34814 2.78815 3.00840 3.32315 3.35847 3.42509 3.52112 3.67193 3.86280 4.09771 4.20517 4.27858 4.34516 4.38182 4.46355 4.59374 4.73290 4.77451 4.79814 4.99572 5.06500 5.11542 5.19000 5.21632 5.25776 5.32827 5.40662 5.46384 5.66840 5.73197 5.74447 5.76901 5.78769 5.86417 5.92717 6.02404 6.04249 6.52963 6.57236 6.60242 6.91750 7.63915 7.64801 7.95391 8.42863 8.52397 9.18672 10.81612 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.001471 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.390191 B =19034.432055 C =19212.972090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.525 5.525 4 C 0.236 3.764 5 C 0.151 3.849 6 N -0.670 5.670 7 C 0.067 3.933 8 H 0.103 0.897 9 C -0.115 4.115 10 C -0.123 4.123 11 H 0.086 0.914 12 C 0.139 3.861 13 N -0.736 5.736 14 C 0.530 3.470 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.164 4.164 27 N -0.314 5.314 28 N -0.484 5.484 29 H 0.440 0.560 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.345 0.655 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.084 0.916 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.433 -15.756 3.046 37.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.254 5.254 4 C -0.047 4.047 5 C 0.020 3.980 6 N -0.301 5.301 7 C -0.043 4.043 8 H 0.121 0.879 9 C -0.153 4.153 10 C -0.143 4.143 11 H 0.105 0.895 12 C 0.015 3.985 13 N -0.390 5.390 14 C 0.315 3.685 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.204 4.204 27 N -0.144 5.144 28 N -0.202 5.202 29 H 0.285 0.715 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.164 0.836 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -34.825 -13.672 1.957 37.463 hybrid contribution 1.178 -2.256 0.395 2.576 sum -33.646 -15.928 2.353 37.300 Atomic orbital electron populations 1.20411 0.83537 1.05146 1.04646 1.24486 0.96749 0.82792 0.95725 1.70395 1.01358 1.29258 1.24391 1.24119 0.93474 0.89700 0.97391 1.20190 0.90067 0.96301 0.91454 1.60378 1.38447 1.19535 1.11742 1.23156 0.87036 0.94877 0.99249 0.87905 1.23033 0.93567 1.00757 0.97991 1.22434 0.96556 0.95621 0.99654 0.89538 1.21089 0.79668 0.97818 0.99923 1.45952 1.06055 1.32835 1.54152 1.20272 0.88012 0.81726 0.78446 1.90700 1.79590 1.29764 1.39456 1.23280 0.93372 1.05285 1.05551 1.84787 1.03089 1.38297 1.65409 1.22326 0.88725 1.18305 1.37571 0.89411 1.24705 0.94038 0.97216 0.95292 1.69935 0.98199 1.40015 1.43600 0.86736 0.80455 0.83267 0.81402 1.19193 1.19949 1.15918 1.23755 0.98781 0.97317 1.00505 1.78012 0.96915 1.12507 1.26925 1.47989 1.04274 1.10097 1.57851 0.71481 0.88914 0.89849 0.88161 0.92372 0.87953 0.83614 0.90680 0.89269 0.91490 0.91182 0.76679 0.88517 0.88514 0.91954 0.89706 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.15 10.51 36.01 0.38 0.22 16 2 C 0.28 1.87 8.24 -155.69 -1.28 0.59 16 3 N -0.52 -5.24 11.19 -8.16 -0.09 -5.33 16 4 C 0.24 2.34 7.65 -156.85 -1.20 1.14 16 5 C 0.15 1.26 6.15 -4.97 -0.03 1.23 16 6 N -0.67 -5.34 6.61 -107.13 -0.71 -6.05 16 7 C 0.07 0.50 3.83 -66.90 -0.26 0.24 16 8 H 0.10 0.80 7.45 -51.93 -0.39 0.41 16 9 C -0.11 -0.84 7.47 -25.92 -0.19 -1.03 16 10 C -0.12 -0.94 3.94 -89.80 -0.35 -1.30 16 11 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 12 C 0.14 1.50 5.36 -4.04 -0.02 1.47 16 13 N -0.74 -9.22 5.56 -60.30 -0.33 -9.55 16 14 C 0.53 9.42 7.85 -10.99 -0.09 9.33 16 15 O -0.52 -11.30 15.86 5.56 0.09 -11.21 16 16 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 18 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.71 13.97 55.49 0.78 -25.93 16 22 Si 0.86 21.92 27.74 -169.99 -4.72 17.20 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.63 16 26 C -0.16 -1.17 7.23 -25.92 -0.19 -1.36 16 27 N -0.31 -3.02 12.80 32.42 0.41 -2.60 16 28 N -0.48 -3.06 7.45 32.62 0.24 -2.82 16 29 H 0.44 1.15 8.96 -182.34 -1.63 -0.49 16 30 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.84 8.13 -51.93 -0.42 0.41 16 35 H 0.34 2.67 8.19 -39.29 -0.32 2.35 16 36 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.77 7.40 -51.93 -0.38 0.39 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 41 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.08 0.54 7.82 -51.93 -0.41 0.14 16 45 H 0.07 0.59 8.10 -51.92 -0.42 0.17 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -37.66 392.83 -11.32 -48.99 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.12 Total: 0.75 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.80 Total: -3.74 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.30 Total: -52.28 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.66 -11.32 -48.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688921886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.671 kcal (2) G-P(sol) polarization free energy of solvation -37.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds