Wall clock time and date at job start Tue Mar 31 2020 22:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30832 * 125.96108 * 2 1 4 4 C 1.33244 * 109.83031 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52726 * 179.73720 * 4 3 2 6 6 N 1.46905 * 109.47232 * 89.99919 * 5 4 3 7 7 C 1.46899 * 111.00054 * 180.02562 * 6 5 4 8 8 H 1.08994 * 112.85120 * 23.79838 * 7 6 5 9 9 C 1.53780 * 113.61365 * 155.00355 * 7 6 5 10 10 C 1.53784 * 87.08301 * 139.97984 * 9 7 6 11 11 H 1.08996 * 113.61205 * 220.01920 * 10 9 7 12 12 C 1.52999 * 113.61667 * 89.19435 * 10 9 7 13 13 N 1.46498 * 109.46859 * 174.99955 * 12 10 9 14 14 C 1.34779 * 119.99906 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00034 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00083 * 180.02562 * 14 13 12 17 17 S 1.80996 * 109.47236 * 179.97438 * 16 14 13 18 18 C 1.76206 * 100.00192 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99420 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00047 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00029 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47366 * 89.99719 * 22 20 18 24 24 H 1.48506 * 109.47092 * 210.00001 * 22 20 18 25 25 H 1.48499 * 109.47202 * 329.99792 * 22 20 18 26 26 C 1.53784 * 113.60996 * 252.49552 * 7 6 5 27 27 N 1.30715 * 108.94545 * 359.97438 * 4 3 2 28 28 N 1.34430 * 125.96160 * 179.97438 * 2 1 3 29 29 H 0.96996 * 126.82506 * 0.02562 * 28 2 1 30 30 H 1.08992 * 109.47113 * 90.02117 * 1 2 3 31 31 H 1.09000 * 109.46726 * 210.02437 * 1 2 3 32 32 H 1.09002 * 109.46654 * 330.02426 * 1 2 3 33 33 H 1.09003 * 109.47217 * 209.99434 * 5 4 3 34 34 H 1.09001 * 109.47325 * 330.00319 * 5 4 3 35 35 H 1.00906 * 110.99974 * 56.04407 * 6 5 4 36 36 H 1.09004 * 113.61033 * 254.52555 * 9 7 6 37 37 H 1.08999 * 113.61799 * 25.34118 * 9 7 6 38 38 H 1.08997 * 109.47158 * 294.99861 * 12 10 9 39 39 H 1.08997 * 109.46962 * 55.00137 * 12 10 9 40 40 H 0.97000 * 119.99984 * 0.02562 * 13 12 10 41 41 H 1.09009 * 109.47138 * 299.99544 * 16 14 13 42 42 H 1.08997 * 109.47403 * 59.99730 * 16 14 13 43 43 H 0.97001 * 120.00601 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.61860 * 334.56623 * 26 7 6 45 45 H 1.09008 * 113.61541 * 105.47013 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7372 1.6236 -0.0049 6 7 5.1226 1.9339 1.3784 7 6 6.2740 2.8455 1.4122 8 1 6.3725 3.4370 0.5020 9 6 6.3618 3.6793 2.7014 10 6 7.8814 3.4479 2.6542 11 1 8.3246 3.2577 3.6316 12 6 8.6387 4.5101 1.8549 13 7 10.0796 4.2713 1.9679 14 6 10.9493 5.0885 1.3417 15 8 10.5391 6.0214 0.6842 16 6 12.4316 4.8425 1.4575 17 16 13.3275 6.0992 0.5121 18 6 14.9856 5.5857 0.8148 19 1 15.1788 4.7210 1.4324 20 6 16.0434 6.2924 0.2596 21 7 17.2820 5.9084 0.4853 22 14 15.7091 7.7884 -0.8080 23 1 15.6679 9.0046 0.0430 24 1 16.7890 7.9271 -1.8179 25 1 14.4046 7.6226 -1.4980 26 6 7.5824 2.1690 1.8541 27 7 3.6195 -0.6168 0.0015 28 7 2.2964 -1.0881 0.0005 29 1 2.0094 -2.0146 0.0006 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 5.5739 1.1486 -0.5172 34 1 4.4696 2.5447 -0.5227 35 1 5.3132 1.0905 1.8985 36 1 6.0746 4.7222 2.5672 37 1 5.8740 3.2128 3.5573 38 1 8.3425 4.4563 0.8073 39 1 8.4022 5.4985 2.2489 40 1 10.4077 3.5249 2.4935 41 1 12.7280 4.8957 2.5052 42 1 12.6678 3.8544 1.0628 43 1 18.0212 6.4025 0.0976 44 1 7.4297 1.2889 2.4787 45 1 8.2807 1.9926 1.0359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688921886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:52 Heat of formation + Delta-G solvation = 34.786699 kcal Electronic energy + Delta-G solvation = -25054.375011 eV Core-core repulsion = 21234.019312 eV Total energy + Delta-G solvation = -3820.355699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.16722 -41.03395 -40.01677 -36.46976 -35.13439 -34.66865 -33.39527 -33.32812 -31.31594 -29.24750 -28.20561 -27.80507 -26.58251 -26.41816 -23.53350 -22.39556 -21.79938 -21.54649 -20.22277 -19.58269 -18.88197 -17.78842 -17.60940 -17.12392 -16.91857 -16.79347 -16.61208 -16.15784 -15.74792 -15.57607 -15.11517 -14.90718 -14.80094 -14.58092 -14.52614 -13.94640 -13.66821 -13.62139 -13.49337 -13.34090 -13.23645 -13.12258 -13.00934 -12.81222 -12.69548 -12.60938 -12.07207 -11.84570 -11.38783 -11.28250 -11.16815 -11.11718 -11.09391 -10.93799 -10.54570 -10.52982 -10.09677 -9.38689 -8.99190 -8.51326 -6.22136 0.52751 0.99830 1.31867 1.47484 1.56741 1.58209 1.68569 1.75381 2.23488 2.27843 2.72605 2.87110 2.93887 3.30740 3.53987 3.57023 3.70712 3.76222 3.88738 3.95018 4.01992 4.23801 4.30794 4.40889 4.47010 4.47969 4.51940 4.70082 4.72089 4.78879 4.84547 4.90688 5.04340 5.05861 5.13672 5.19560 5.21879 5.31275 5.35814 5.48703 5.70907 5.99457 6.11521 6.17503 6.32859 6.49548 6.94035 7.07086 7.21475 8.61095 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.001471 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.390191 B =19034.432055 C =19212.972090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.285 3.715 3 N -0.565 5.565 4 C 0.224 3.776 5 C 0.154 3.846 6 N -0.671 5.671 7 C 0.065 3.935 8 H 0.097 0.903 9 C -0.109 4.109 10 C -0.113 4.113 11 H 0.101 0.899 12 C 0.138 3.862 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.565 6.565 16 C -0.112 4.112 17 S -0.177 6.177 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.156 4.156 27 N -0.341 5.341 28 N -0.475 5.475 29 H 0.455 0.545 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.346 0.654 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.416 0.584 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.098 0.902 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.636 -16.720 3.592 40.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.007 3.993 3 N -0.295 5.295 4 C -0.059 4.059 5 C 0.023 3.977 6 N -0.302 5.302 7 C -0.045 4.045 8 H 0.115 0.885 9 C -0.148 4.148 10 C -0.132 4.132 11 H 0.119 0.881 12 C 0.015 3.985 13 N -0.363 5.363 14 C 0.319 3.681 15 O -0.443 6.443 16 C -0.263 4.263 17 S 0.050 5.950 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.195 4.195 27 N -0.172 5.172 28 N -0.195 5.195 29 H 0.304 0.696 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.166 0.834 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.253 0.747 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -37.052 -14.709 2.538 39.946 hybrid contribution 1.709 -2.111 0.309 2.734 sum -35.343 -16.820 2.848 39.245 Atomic orbital electron populations 1.20642 0.80259 1.06516 1.06023 1.25273 0.98289 0.82050 0.93654 1.70382 1.01791 1.31109 1.26236 1.24322 0.93945 0.90000 0.97661 1.20152 0.89926 0.95986 0.91648 1.60367 1.38623 1.19669 1.11577 1.23161 0.87200 0.94906 0.99195 0.88507 1.23011 0.93112 1.00602 0.98086 1.22291 0.96389 0.94772 0.99754 0.88062 1.21208 0.78399 0.98740 1.00177 1.45733 1.06353 1.31861 1.52377 1.19953 0.87667 0.81874 0.78619 1.90690 1.79969 1.31870 1.41783 1.23277 0.93953 1.03634 1.05391 1.84718 1.01708 1.41310 1.67297 1.22471 0.90881 1.17482 1.36908 0.91959 1.25546 0.93885 0.99898 0.96509 1.70012 0.99132 1.41507 1.44864 0.85873 0.80515 0.79914 0.80109 1.18661 1.18309 1.16129 1.23720 0.98106 0.97425 1.00239 1.77908 0.98854 1.12545 1.27863 1.47931 1.03302 1.11027 1.57278 0.69643 0.87353 0.86948 0.88265 0.92173 0.88349 0.83438 0.91037 0.88498 0.92196 0.91891 0.74654 0.86805 0.86857 0.91367 0.88406 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.13 10.51 71.24 0.75 0.62 16 2 C 0.29 3.45 8.24 138.23 1.14 4.59 16 3 N -0.56 -11.10 11.19 -179.73 -2.01 -13.11 16 4 C 0.22 4.42 7.65 138.63 1.06 5.48 16 5 C 0.15 2.57 6.15 85.56 0.53 3.10 16 6 N -0.67 -10.20 6.61 -492.85 -3.26 -13.46 16 7 C 0.07 0.90 3.83 45.44 0.17 1.07 16 8 H 0.10 1.46 7.45 -2.39 -0.02 1.44 16 9 C -0.11 -1.40 7.47 31.12 0.23 -1.17 16 10 C -0.11 -1.46 3.94 -10.27 -0.04 -1.50 16 11 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 12 C 0.14 2.75 5.36 86.38 0.46 3.21 16 13 N -0.71 -16.27 5.56 -463.07 -2.57 -18.85 16 14 C 0.53 18.25 7.85 87.66 0.69 18.93 16 15 O -0.56 -24.24 15.86 -3.03 -0.05 -24.29 16 16 C -0.11 -4.19 6.16 71.23 0.44 -3.75 16 17 S -0.18 -9.00 18.55 -56.49 -1.05 -10.04 16 18 C -0.53 -31.02 10.04 67.95 0.68 -30.33 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 20 C 0.05 2.77 5.50 84.86 0.47 3.24 16 21 N -0.92 -56.07 13.97 21.65 0.30 -55.77 16 22 Si 0.91 45.27 27.74 68.60 1.90 47.18 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 26 C -0.16 -1.90 7.23 31.12 0.23 -1.68 16 27 N -0.34 -6.43 12.80 -51.33 -0.66 -7.08 16 28 N -0.48 -5.48 7.45 -50.71 -0.38 -5.86 16 29 H 0.45 1.68 8.96 -213.10 -1.91 -0.23 16 30 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 1.66 8.13 -2.39 -0.02 1.64 16 35 H 0.35 5.01 8.19 -89.69 -0.73 4.27 16 36 H 0.07 0.99 8.10 -2.38 -0.02 0.97 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.33 7.40 -2.39 -0.02 1.31 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.42 6.88 8.47 -92.71 -0.79 6.09 16 41 H 0.11 3.90 8.14 -2.39 -0.02 3.89 16 42 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 43 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.10 0.99 7.82 -2.39 -0.02 0.97 16 45 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 Total: -1.00 -82.42 392.83 -3.39 -85.81 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -2.43 Total: 13.66 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 6.80 Total: 1.81 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -8.57 Total: -114.13 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.04 kcal Total: -82.42 -3.39 -85.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688921886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.597 kcal (2) G-P(sol) polarization free energy of solvation -82.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds