Wall clock time and date at job start Tue Mar 31 2020 23:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47255 * 2 1 4 4 C 1.35626 * 125.67831 * 260.92234 * 3 2 1 5 5 C 1.35517 * 108.85284 * 179.97438 * 4 3 2 6 6 Cl 1.73604 * 126.07157 * 180.02562 * 5 4 3 7 7 C 1.39880 * 107.85265 * 359.73335 * 5 4 3 8 8 C 1.37645 * 125.67482 * 80.89056 * 3 2 1 9 9 C 1.46662 * 126.22539 * 0.02562 * 8 3 2 10 10 O 1.21705 * 119.99869 * 15.58019 * 9 8 3 11 11 N 1.34767 * 120.00302 * 195.58017 * 9 8 3 12 12 C 1.48122 * 127.03381 * 358.46356 * 11 9 8 13 13 C 1.55109 * 103.31464 * 140.80253 * 12 11 9 14 14 H 1.08998 * 110.72180 * 278.97679 * 13 12 11 15 15 C 1.53000 * 110.82995 * 155.60448 * 13 12 11 16 16 C 1.54620 * 102.76155 * 37.26260 * 13 12 11 17 17 H 1.08996 * 110.31932 * 97.20738 * 16 13 12 18 18 C 1.53000 * 110.32549 * 219.31855 * 16 13 12 19 19 N 1.46505 * 109.46716 * 183.56473 * 18 16 13 20 20 C 1.36932 * 119.99562 * 180.27566 * 19 18 16 21 21 H 1.07996 * 120.00421 * 359.73032 * 20 19 18 22 22 C 1.38820 * 119.99658 * 179.73041 * 20 19 18 23 23 N 1.31621 * 119.99770 * 180.02562 * 22 20 19 24 24 Si 1.86791 * 119.99970 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47059 * 90.00208 * 24 22 20 26 26 H 1.48498 * 109.47231 * 210.00324 * 24 22 20 27 27 H 1.48500 * 109.47392 * 330.00405 * 24 22 20 28 28 C 1.47490 * 127.03730 * 178.50753 * 11 9 8 29 29 H 1.08993 * 109.46733 * 55.18451 * 1 2 3 30 30 H 1.08994 * 109.46620 * 175.18296 * 1 2 3 31 31 H 1.08998 * 109.46806 * 295.18917 * 1 2 3 32 32 H 1.08998 * 109.47665 * 239.99853 * 2 1 3 33 33 H 1.09000 * 109.46954 * 119.99808 * 2 1 3 34 34 H 1.08002 * 125.57376 * 359.94518 * 4 3 2 35 35 H 1.08004 * 126.45775 * 180.26499 * 7 5 4 36 36 H 1.09003 * 110.66282 * 259.18716 * 12 11 9 37 37 H 1.08995 * 110.66074 * 22.13285 * 12 11 9 38 38 H 1.09007 * 109.46858 * 306.61962 * 15 13 12 39 39 H 1.08998 * 109.47113 * 66.61920 * 15 13 12 40 40 H 1.08999 * 109.47153 * 186.62659 * 15 13 12 41 41 H 1.08998 * 109.46653 * 63.57229 * 18 16 13 42 42 H 1.08998 * 109.47492 * 303.56855 * 18 16 13 43 43 H 0.96996 * 119.99964 * 0.02562 * 19 18 16 44 44 H 0.96998 * 120.00020 * 179.97438 * 23 22 20 45 45 H 1.09007 * 109.91358 * 86.04899 * 28 11 9 46 46 H 1.09000 * 110.07439 * 324.86486 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4460 2.0691 -1.0879 5 6 2.8195 3.3128 -0.7006 6 17 3.4360 4.5634 -1.7349 7 6 2.6137 3.4122 0.6794 8 6 2.1191 2.1970 1.1040 9 6 1.7596 1.8409 2.4806 10 8 1.5997 0.6734 2.7851 11 7 1.6064 2.8063 3.4084 12 6 1.7926 4.2634 3.2187 13 6 0.6411 4.8824 4.0535 14 1 -0.2944 4.8621 3.4945 15 6 0.9866 6.3097 4.4828 16 6 0.5662 3.9444 5.2804 17 1 1.1203 4.3702 6.1168 18 6 -0.8917 3.7037 5.6772 19 7 -0.9385 2.8835 6.8902 20 6 -2.1456 2.5324 7.4330 21 1 -3.0631 2.8637 6.9695 22 6 -2.1901 1.7505 8.5792 23 7 -3.3504 1.4125 9.1007 24 14 -0.6033 1.1768 9.3805 25 1 -0.1636 2.1809 10.3824 26 1 -0.8320 -0.1269 10.0538 27 1 0.4471 1.0204 8.3426 28 6 1.2198 2.6280 4.8205 29 1 -0.3632 0.5867 -0.8437 30 1 -0.3632 -1.0240 -0.0863 31 1 -0.3633 0.4374 0.9299 32 1 1.8935 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.4832 1.6877 -2.0977 35 1 2.8083 4.2768 1.2967 36 1 2.7606 4.5811 3.6064 37 1 1.6950 4.5299 2.1664 38 1 1.9525 6.3133 4.9880 39 1 1.0340 6.9521 3.6036 40 1 0.2196 6.6802 5.1628 41 1 -1.4076 3.1862 4.8685 42 1 -1.3794 4.6600 5.8661 43 1 -0.1145 2.5861 7.3067 44 1 -3.3815 0.8659 9.9013 45 1 2.1037 2.4216 5.4242 46 1 0.5078 1.8079 4.9128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699969986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:47 Heat of formation + Delta-G solvation = 31.899226 kcal Electronic energy + Delta-G solvation = -27689.546088 eV Core-core repulsion = 23834.728721 eV Total energy + Delta-G solvation = -3854.817367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.87064 -39.83254 -37.84637 -36.67294 -35.01326 -34.29961 -32.90166 -31.59763 -30.44737 -29.49442 -28.90590 -26.64781 -25.77570 -23.98020 -23.27854 -22.02038 -21.25476 -20.82694 -19.83879 -19.37686 -17.71505 -17.43093 -16.52881 -16.01898 -15.67975 -15.40660 -14.76440 -14.69949 -14.57593 -14.44992 -13.96613 -13.78240 -13.51239 -13.30411 -13.13222 -12.96738 -12.89844 -12.69227 -12.57173 -12.36385 -12.11581 -11.82096 -11.69062 -11.52198 -11.50810 -11.41139 -11.12636 -10.94765 -10.67377 -10.52973 -10.27203 -10.09185 -10.02300 -9.58100 -8.98506 -8.91299 -8.79758 -8.46362 -7.23798 -5.76279 -3.12132 1.17965 1.81249 2.15914 2.42180 3.10082 3.15452 3.38595 3.41110 3.46520 4.24022 4.38430 4.44971 4.54461 4.60008 4.69039 4.73426 4.82508 4.87192 5.00791 5.20515 5.21782 5.27748 5.32498 5.39238 5.43386 5.50900 5.54693 5.62433 5.62818 5.68199 5.79035 5.84838 5.87027 6.03278 6.05692 6.08734 6.16613 6.26011 6.33857 6.49652 6.61870 6.73699 6.74556 7.43577 7.99092 8.04120 8.42444 9.21164 9.93473 10.12690 11.42168 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.002961 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.774979 B = 9452.453845 C =10628.772091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.399 5.399 4 C 0.030 3.970 5 C -0.123 4.123 6 Cl -0.052 7.052 7 C -0.146 4.146 8 C -0.022 4.022 9 C 0.603 3.397 10 O -0.541 6.541 11 N -0.603 5.603 12 C 0.082 3.918 13 C -0.098 4.098 14 H 0.087 0.913 15 C -0.141 4.141 16 C -0.108 4.108 17 H 0.088 0.912 18 C 0.167 3.833 19 N -0.756 5.756 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.883 3.117 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.276 1.276 28 C 0.112 3.888 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.032 0.968 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.065 0.935 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.140 5.878 -23.206 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.072 5.072 4 C -0.106 4.106 5 C -0.156 4.156 6 Cl -0.024 7.024 7 C -0.171 4.171 8 C -0.136 4.136 9 C 0.392 3.608 10 O -0.420 6.420 11 N -0.336 5.336 12 C -0.040 4.040 13 C -0.118 4.118 14 H 0.106 0.894 15 C -0.198 4.198 16 C -0.127 4.127 17 H 0.106 0.894 18 C 0.040 3.960 19 N -0.402 5.402 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.009 4.009 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.194 0.806 35 H 0.182 0.818 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.719 4.854 -23.119 27.834 hybrid contribution 1.125 -0.357 0.538 1.297 sum 15.844 4.497 -22.582 27.950 Atomic orbital electron populations 1.22103 0.93512 1.03415 1.03343 1.22184 0.96359 0.78626 1.05425 1.44051 1.45724 1.11888 1.05515 1.21704 1.04473 0.91906 0.92561 1.19910 1.12206 0.91429 0.92026 1.98324 1.86362 1.51294 1.66386 1.21731 1.04755 0.97086 0.93569 1.19955 1.13295 0.91668 0.88674 1.16410 0.77503 0.84388 0.82489 1.90834 1.52359 1.17756 1.81045 1.48359 1.67280 1.06927 1.11010 1.23302 0.99099 0.79616 1.02012 1.22312 0.98609 0.94902 0.95950 0.89450 1.21739 1.02016 0.94647 1.01418 1.22465 0.98829 0.93922 0.97520 0.89396 1.20682 0.91361 0.94634 0.89328 1.42726 1.05368 1.62744 1.29328 1.19038 0.85344 1.26357 1.06641 0.89255 1.24672 0.96223 1.00102 0.98106 1.69702 1.22839 1.42045 1.23630 0.86557 0.84192 0.78356 0.79522 1.21058 1.21716 1.20238 1.22231 0.99844 0.99608 0.79251 0.92125 0.90264 0.91269 0.88902 0.87107 0.80634 0.81761 0.90442 0.88355 0.92414 0.92423 0.91614 0.95483 0.95036 0.80680 0.93058 0.91674 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.23 37.16 0.38 -1.15 16 2 C 0.09 0.85 6.23 -4.04 -0.03 0.82 16 3 N -0.40 -4.17 2.77 -112.82 -0.31 -4.48 16 4 C 0.03 0.27 11.34 -16.85 -0.19 0.08 16 5 C -0.12 -1.20 6.66 -39.94 -0.27 -1.46 16 6 Cl -0.05 -0.46 29.30 -51.86 -1.52 -1.98 16 7 C -0.15 -1.52 9.10 -39.09 -0.36 -1.87 16 8 C -0.02 -0.26 6.79 -81.98 -0.56 -0.82 16 9 C 0.60 8.92 7.81 -12.86 -0.10 8.82 16 10 O -0.54 -9.63 15.24 5.18 0.08 -9.55 16 11 N -0.60 -8.18 3.29 -171.20 -0.56 -8.74 16 12 C 0.08 0.82 5.32 -2.03 -0.01 0.81 16 13 C -0.10 -1.06 3.22 -88.65 -0.29 -1.34 16 14 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 15 C -0.14 -1.23 9.17 37.16 0.34 -0.89 16 16 C -0.11 -1.53 2.62 -89.25 -0.23 -1.76 16 17 H 0.09 1.19 7.85 -51.93 -0.41 0.79 16 18 C 0.17 3.12 5.32 -4.04 -0.02 3.09 16 19 N -0.76 -17.75 5.18 -59.91 -0.31 -18.06 16 20 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.60 13.97 55.49 0.78 -28.83 16 24 Si 0.88 22.28 27.73 -169.99 -4.71 17.57 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 27 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 28 C 0.11 1.72 6.36 -2.98 -0.02 1.70 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 33 H 0.11 1.22 6.62 -51.93 -0.34 0.88 16 34 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.17 1.43 5.10 -52.48 -0.27 1.17 16 36 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 37 H 0.10 0.86 4.57 -51.93 -0.24 0.62 16 38 H 0.06 0.47 8.10 -51.92 -0.42 0.05 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.36 8.25 5.42 -40.82 -0.22 8.03 16 44 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 45 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 46 H 0.09 1.72 7.54 -51.93 -0.39 1.32 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -34.01 383.06 -9.32 -43.33 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.93 Total: 5.97 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.60 Total: -1.01 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.41 Total: -60.10 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.52 Total: -1.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.01 -9.32 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699969986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.227 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds