Wall clock time and date at job start Tue Mar 31 2020 23:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47402 * 2 1 4 4 C 1.53002 * 109.47374 * 239.99705 * 2 1 3 5 5 C 1.53002 * 109.47234 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46960 * 60.00673 * 5 4 2 7 7 C 1.52999 * 109.46954 * 299.99799 * 6 5 4 8 8 C 1.52999 * 109.46985 * 120.00276 * 2 1 3 9 9 C 1.53000 * 109.47038 * 299.99600 * 8 2 1 10 10 N 1.46502 * 109.47022 * 173.36714 * 9 8 2 11 11 C 1.36946 * 119.99598 * 181.81956 * 10 9 8 12 12 H 1.07997 * 119.99967 * 0.02562 * 11 10 9 13 13 C 1.38809 * 119.99627 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00244 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00125 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46663 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47013 * 120.00297 * 15 13 11 18 18 H 1.48503 * 109.47139 * 240.00625 * 15 13 11 19 19 N 1.46501 * 109.47323 * 59.99903 * 8 2 1 20 20 C 1.34769 * 119.99917 * 291.38915 * 19 8 2 21 21 O 1.21711 * 120.00379 * 354.14024 * 20 19 8 22 22 C 1.46557 * 120.00004 * 174.13021 * 20 19 8 23 23 C 1.37933 * 126.23444 * 180.02562 * 22 20 19 24 24 C 1.39741 * 107.12289 * 180.02562 * 23 22 20 25 25 C 1.35661 * 107.88951 * 359.97438 * 24 23 22 26 26 Cl 1.73596 * 125.57899 * 180.02562 * 25 24 23 27 27 N 1.35585 * 108.84687 * 359.73602 * 25 24 23 28 28 H 0.96994 * 125.69934 * 180.28856 * 27 25 24 29 29 H 1.09000 * 109.47426 * 293.78284 * 1 2 3 30 30 H 1.09000 * 109.46991 * 53.78167 * 1 2 3 31 31 H 1.09004 * 109.47258 * 173.77989 * 1 2 3 32 32 H 1.08994 * 109.47613 * 300.00551 * 4 2 1 33 33 H 1.09006 * 109.47021 * 60.00308 * 4 2 1 34 34 H 1.09000 * 109.47241 * 300.00104 * 5 4 2 35 35 H 1.09001 * 109.47100 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47292 * 179.97438 * 6 5 4 37 37 H 1.08993 * 109.47276 * 59.99459 * 6 5 4 38 38 H 1.08998 * 109.47655 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47363 * 300.00255 * 7 6 5 40 40 H 1.08992 * 109.47827 * 293.37145 * 9 8 2 41 41 H 1.09007 * 109.46598 * 53.37328 * 9 8 2 42 42 H 0.96998 * 120.00146 * 1.82514 * 10 9 8 43 43 H 0.96996 * 119.99765 * 179.97438 * 14 13 11 44 44 H 0.97006 * 120.00010 * 111.39397 * 19 8 2 45 45 H 1.07998 * 126.43409 * 0.04393 * 23 22 20 46 46 H 1.08002 * 126.05758 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7205 1.2490 8 6 2.0399 -0.7213 1.2492 9 6 1.5300 0.0000 2.4985 10 7 1.8836 -0.7767 3.6893 11 6 1.4961 -0.3434 4.9292 12 1 0.9294 0.5705 5.0292 13 6 1.8307 -1.0795 6.0575 14 7 2.5209 -2.1937 5.9356 15 14 1.3015 -0.4890 7.7488 16 1 0.5420 0.7800 7.6148 17 1 0.4387 -1.5171 8.3845 18 1 2.5027 -0.2608 8.5917 19 7 1.5515 -2.1025 1.2492 20 6 0.2389 -2.3531 1.4239 21 8 -0.5246 -1.4428 1.6877 22 6 -0.2691 -3.7219 1.2961 23 6 -1.5804 -4.1222 1.4471 24 6 -1.6150 -5.5040 1.2411 25 6 -0.3510 -5.9171 0.9726 26 17 0.1285 -7.5527 0.6437 27 7 0.4754 -4.8425 0.9969 28 1 1.4314 -4.8599 0.8337 29 1 -0.3634 0.4144 0.9404 30 1 -0.3633 0.6072 -0.8291 31 1 -0.3634 -1.0216 -0.1113 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2075 -2.1393 34 1 3.9330 0.3071 -1.2497 35 1 3.9334 -1.2342 -2.1397 36 1 5.1705 -1.4417 -0.0007 37 1 3.7175 -2.4694 -0.0001 38 1 3.9344 -1.2337 2.1390 39 1 3.9334 0.3074 1.2488 40 1 1.9869 0.9876 2.5599 41 1 0.4464 0.1038 2.4411 42 1 2.3923 -1.5976 3.5995 43 1 2.7551 -2.7078 6.7241 44 1 2.1730 -2.8367 1.1235 45 1 -2.4221 -3.4871 1.6803 46 1 -2.4927 -6.1317 1.2867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715134110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:36 Heat of formation + Delta-G solvation = 24.546697 kcal Electronic energy + Delta-G solvation = -29175.092787 eV Core-core repulsion = 25319.956591 eV Total energy + Delta-G solvation = -3855.136196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44657 -40.38551 -37.57472 -36.78789 -34.62872 -33.32627 -32.50734 -31.53360 -31.00031 -29.59403 -28.60020 -26.36977 -24.99517 -23.20258 -22.81349 -21.23322 -20.93037 -20.46752 -20.19706 -18.95241 -18.81685 -17.15106 -16.25548 -15.86797 -15.26014 -14.87073 -14.42519 -14.32667 -14.22134 -13.99441 -13.81996 -13.67947 -13.36091 -13.04889 -12.98181 -12.77845 -12.50815 -12.30228 -11.93129 -11.84572 -11.71422 -11.45683 -11.38535 -11.36611 -11.11865 -10.87248 -10.78702 -10.75177 -10.40295 -10.07239 -9.97874 -9.70004 -9.59315 -9.38032 -9.13756 -8.67835 -8.37316 -8.10947 -6.75546 -5.68658 -2.93491 1.45969 1.54981 2.60055 3.18687 3.40809 3.48753 3.54931 3.56816 3.72493 4.65975 4.77820 4.82364 4.84766 5.00620 5.19021 5.20967 5.22904 5.27779 5.52220 5.56407 5.60334 5.67650 5.69004 5.75897 5.88293 5.97335 6.04083 6.07482 6.08694 6.18873 6.23955 6.25640 6.34596 6.36755 6.47192 6.48660 6.63305 6.65787 6.75091 6.81732 7.02557 7.10712 7.23318 7.80461 7.87121 8.51233 8.60172 9.62730 10.21540 10.56592 11.54887 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.005104 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.445386 B = 5485.026063 C = 7607.222656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.121 4.121 8 C 0.182 3.818 9 C 0.133 3.867 10 N -0.723 5.723 11 C -0.223 4.223 12 H 0.068 0.932 13 C -0.018 4.018 14 N -0.938 5.938 15 Si 0.903 3.097 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.294 1.294 19 N -0.709 5.709 20 C 0.589 3.411 21 O -0.493 6.493 22 C -0.014 4.014 23 C -0.108 4.108 24 C -0.176 4.176 25 C 0.078 3.922 26 Cl -0.024 7.024 27 N -0.531 5.531 28 H 0.418 0.582 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.016 0.984 41 H 0.065 0.935 42 H 0.380 0.620 43 H 0.251 0.749 44 H 0.387 0.613 45 H 0.156 0.844 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 -5.426 -17.922 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.159 4.159 8 C 0.097 3.903 9 C 0.005 3.995 10 N -0.367 5.367 11 C -0.354 4.354 12 H 0.086 0.914 13 C -0.213 4.213 14 N -0.588 5.588 15 Si 0.735 3.265 16 H -0.206 1.206 17 H -0.221 1.221 18 H -0.221 1.221 19 N -0.360 5.360 20 C 0.376 3.624 21 O -0.367 6.367 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.202 4.202 25 C -0.063 4.063 26 Cl 0.004 6.996 27 N -0.131 5.131 28 H 0.256 0.744 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.033 0.967 41 H 0.083 0.917 42 H 0.213 0.787 43 H 0.061 0.939 44 H 0.220 0.780 45 H 0.174 0.826 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.329 -4.726 -17.669 18.338 hybrid contribution 0.924 -0.757 0.911 1.503 sum -0.405 -5.483 -16.758 17.637 Atomic orbital electron populations 1.22431 0.93765 1.02350 1.01646 1.21495 0.97001 0.99100 0.93641 0.90733 1.21552 0.95018 1.00671 0.97518 1.21550 0.95955 1.00711 0.97410 1.21555 1.00242 0.98954 0.94900 1.21815 0.93670 1.02193 0.98203 1.20630 0.93169 0.80867 0.95672 1.21328 1.00135 0.93046 0.84951 1.42178 1.66080 1.27567 1.00834 1.19264 1.27148 1.05074 0.83948 0.91358 1.24652 1.01509 0.97501 0.97611 1.69654 1.44531 1.16497 1.28112 0.86148 0.77600 0.77736 0.84969 1.20635 1.22068 1.22139 1.45716 1.07342 1.08553 1.74391 1.16586 0.82591 0.85477 0.77761 1.90875 1.57370 1.42814 1.45629 1.20832 0.92224 0.86567 1.13213 1.21251 0.95162 0.94215 1.02758 1.20621 0.94707 0.95431 1.09468 1.20932 0.91040 0.81915 1.12460 1.98387 1.92468 1.14506 1.94216 1.42005 1.10254 1.05784 1.55041 0.74442 0.90015 0.95285 0.91874 0.92321 0.92406 0.91978 0.92524 0.91880 0.92728 0.90143 0.90467 0.96663 0.91704 0.78669 0.93918 0.77978 0.82614 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 7.28 37.15 0.27 -1.90 16 2 C -0.09 -1.25 2.07 -90.62 -0.19 -1.43 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.22 5.04 -26.73 -0.13 -1.36 16 5 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 6 C -0.12 -1.27 5.75 -26.73 -0.15 -1.43 16 7 C -0.12 -1.69 4.70 -26.70 -0.13 -1.82 16 8 C 0.18 2.81 0.32 -131.79 -0.04 2.77 16 9 C 0.13 2.73 4.45 -4.04 -0.02 2.71 16 10 N -0.72 -18.07 5.15 -59.91 -0.31 -18.38 16 11 C -0.22 -6.36 9.99 -15.06 -0.15 -6.51 16 12 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 13 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 14 N -0.94 -28.46 13.06 55.49 0.72 -27.73 16 15 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 18 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 19 N -0.71 -10.50 3.51 -48.91 -0.17 -10.67 16 20 C 0.59 9.91 5.82 -12.91 -0.08 9.83 16 21 O -0.49 -9.64 10.33 5.18 0.05 -9.58 16 22 C -0.01 -0.22 7.05 -81.93 -0.58 -0.79 16 23 C -0.11 -1.56 10.65 -39.13 -0.42 -1.97 16 24 C -0.18 -2.20 10.78 -39.94 -0.43 -2.63 16 25 C 0.08 0.95 7.74 -16.81 -0.13 0.82 16 26 Cl -0.02 -0.25 29.30 -51.86 -1.52 -1.77 16 27 N -0.53 -6.51 6.01 -6.54 -0.04 -6.55 16 28 H 0.42 4.13 8.21 -40.82 -0.34 3.79 16 29 H 0.08 1.43 5.18 -51.93 -0.27 1.16 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.99 5.13 -51.93 -0.27 0.73 16 32 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.54 6.70 -51.93 -0.35 0.20 16 38 H 0.08 1.33 7.26 -51.93 -0.38 0.95 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 1.46 4.27 -51.93 -0.22 1.24 16 42 H 0.38 9.80 6.54 -40.82 -0.27 9.54 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.39 4.92 6.23 -40.82 -0.25 4.67 16 45 H 0.16 2.17 8.06 -52.49 -0.42 1.74 16 46 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -32.20 365.81 -9.71 -41.90 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -6.51 Total: 14.80 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.43 Total: -5.65 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.21 Total: -63.33 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.05 Total: -9.58 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.52 Total: -1.77 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.20 -9.71 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715134110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.451 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds