Wall clock time and date at job start Tue Mar 31 2020 23:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47402 * 2 1 4 4 C 1.53002 * 109.47374 * 239.99705 * 2 1 3 5 5 C 1.53002 * 109.47234 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46960 * 60.00673 * 5 4 2 7 7 C 1.52999 * 109.46954 * 299.99799 * 6 5 4 8 8 C 1.52999 * 109.46985 * 120.00276 * 2 1 3 9 9 C 1.53000 * 109.47038 * 299.99600 * 8 2 1 10 10 N 1.46502 * 109.47022 * 173.36714 * 9 8 2 11 11 C 1.36946 * 119.99598 * 181.81956 * 10 9 8 12 12 H 1.07997 * 119.99967 * 0.02562 * 11 10 9 13 13 C 1.38809 * 119.99627 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00244 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00125 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46663 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47013 * 120.00297 * 15 13 11 18 18 H 1.48503 * 109.47139 * 240.00625 * 15 13 11 19 19 N 1.46501 * 109.47323 * 59.99903 * 8 2 1 20 20 C 1.34769 * 119.99917 * 291.38915 * 19 8 2 21 21 O 1.21711 * 120.00379 * 354.14024 * 20 19 8 22 22 C 1.46557 * 120.00004 * 174.13021 * 20 19 8 23 23 C 1.37933 * 126.23444 * 180.02562 * 22 20 19 24 24 C 1.39741 * 107.12289 * 180.02562 * 23 22 20 25 25 C 1.35661 * 107.88951 * 359.97438 * 24 23 22 26 26 Cl 1.73596 * 125.57899 * 180.02562 * 25 24 23 27 27 N 1.35585 * 108.84687 * 359.73602 * 25 24 23 28 28 H 0.96994 * 125.69934 * 180.28856 * 27 25 24 29 29 H 1.09000 * 109.47426 * 293.78284 * 1 2 3 30 30 H 1.09000 * 109.46991 * 53.78167 * 1 2 3 31 31 H 1.09004 * 109.47258 * 173.77989 * 1 2 3 32 32 H 1.08994 * 109.47613 * 300.00551 * 4 2 1 33 33 H 1.09006 * 109.47021 * 60.00308 * 4 2 1 34 34 H 1.09000 * 109.47241 * 300.00104 * 5 4 2 35 35 H 1.09001 * 109.47100 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47292 * 179.97438 * 6 5 4 37 37 H 1.08993 * 109.47276 * 59.99459 * 6 5 4 38 38 H 1.08998 * 109.47655 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47363 * 300.00255 * 7 6 5 40 40 H 1.08992 * 109.47827 * 293.37145 * 9 8 2 41 41 H 1.09007 * 109.46598 * 53.37328 * 9 8 2 42 42 H 0.96998 * 120.00146 * 1.82514 * 10 9 8 43 43 H 0.96996 * 119.99765 * 179.97438 * 14 13 11 44 44 H 0.97006 * 120.00010 * 111.39397 * 19 8 2 45 45 H 1.07998 * 126.43409 * 0.04393 * 23 22 20 46 46 H 1.08002 * 126.05758 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7205 1.2490 8 6 2.0399 -0.7213 1.2492 9 6 1.5300 0.0000 2.4985 10 7 1.8836 -0.7767 3.6893 11 6 1.4961 -0.3434 4.9292 12 1 0.9294 0.5705 5.0292 13 6 1.8307 -1.0795 6.0575 14 7 2.5209 -2.1937 5.9356 15 14 1.3015 -0.4890 7.7488 16 1 0.5420 0.7800 7.6148 17 1 0.4387 -1.5171 8.3845 18 1 2.5027 -0.2608 8.5917 19 7 1.5515 -2.1025 1.2492 20 6 0.2389 -2.3531 1.4239 21 8 -0.5246 -1.4428 1.6877 22 6 -0.2691 -3.7219 1.2961 23 6 -1.5804 -4.1222 1.4471 24 6 -1.6150 -5.5040 1.2411 25 6 -0.3510 -5.9171 0.9726 26 17 0.1285 -7.5527 0.6437 27 7 0.4754 -4.8425 0.9969 28 1 1.4314 -4.8599 0.8337 29 1 -0.3634 0.4144 0.9404 30 1 -0.3633 0.6072 -0.8291 31 1 -0.3634 -1.0216 -0.1113 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2075 -2.1393 34 1 3.9330 0.3071 -1.2497 35 1 3.9334 -1.2342 -2.1397 36 1 5.1705 -1.4417 -0.0007 37 1 3.7175 -2.4694 -0.0001 38 1 3.9344 -1.2337 2.1390 39 1 3.9334 0.3074 1.2488 40 1 1.9869 0.9876 2.5599 41 1 0.4464 0.1038 2.4411 42 1 2.3923 -1.5976 3.5995 43 1 2.7551 -2.7078 6.7241 44 1 2.1730 -2.8367 1.1235 45 1 -2.4221 -3.4871 1.6803 46 1 -2.4927 -6.1317 1.2867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715134110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:35 Heat of formation + Delta-G solvation = 4.490727 kcal Electronic energy + Delta-G solvation = -29175.962479 eV Core-core repulsion = 25319.956591 eV Total energy + Delta-G solvation = -3856.005888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.57742 -41.54246 -38.78004 -37.71105 -36.37843 -34.74787 -33.66254 -33.11688 -32.20679 -31.09506 -29.70212 -27.74285 -26.51002 -24.76336 -24.21016 -22.44760 -21.98564 -21.54650 -21.28702 -20.10261 -20.04757 -19.18209 -17.44010 -17.13114 -16.79927 -16.18538 -15.94341 -15.44012 -15.35617 -15.30454 -15.06335 -14.85135 -14.76292 -14.69706 -14.02362 -13.97972 -13.83823 -13.54828 -13.32878 -13.00182 -12.86298 -12.79914 -12.68353 -12.66646 -12.52008 -12.28954 -12.22808 -12.04824 -11.85391 -11.82689 -11.36574 -11.07264 -11.02311 -10.85412 -10.51136 -10.16530 -9.68632 -9.17296 -8.85729 -7.93392 -5.17077 0.34276 0.56930 1.43371 1.44886 1.54291 1.55110 2.12937 2.26613 2.47846 2.56566 3.40494 3.66070 3.75805 3.82074 3.92648 4.10353 4.15919 4.18210 4.26859 4.37966 4.49871 4.54292 4.58971 4.69621 4.75368 4.81789 4.91339 4.93317 5.03554 5.07199 5.13228 5.19518 5.22390 5.26077 5.33844 5.38344 5.42916 5.47991 5.51587 5.54280 5.68587 5.75205 5.75689 6.13350 6.30179 6.64927 7.33384 7.37502 8.14715 8.40993 9.30007 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.005104 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.445386 B = 5485.026063 C = 7607.222656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.103 4.103 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.189 3.811 9 C 0.132 3.868 10 N -0.726 5.726 11 C -0.232 4.232 12 H 0.062 0.938 13 C -0.072 4.072 14 N -0.965 5.965 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.296 1.296 18 H -0.290 1.290 19 N -0.699 5.699 20 C 0.585 3.415 21 O -0.529 6.529 22 C -0.040 4.040 23 C -0.119 4.119 24 C -0.180 4.180 25 C 0.085 3.915 26 Cl -0.001 7.001 27 N -0.521 5.521 28 H 0.428 0.572 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.010 0.990 41 H 0.047 0.953 42 H 0.374 0.626 43 H 0.248 0.752 44 H 0.398 0.602 45 H 0.151 0.849 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -6.379 -19.674 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.141 4.141 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.154 4.154 8 C 0.103 3.897 9 C 0.005 3.995 10 N -0.368 5.368 11 C -0.364 4.364 12 H 0.080 0.920 13 C -0.264 4.264 14 N -0.617 5.617 15 Si 0.795 3.205 16 H -0.198 1.198 17 H -0.223 1.223 18 H -0.217 1.217 19 N -0.351 5.351 20 C 0.372 3.628 21 O -0.407 6.407 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.206 4.206 25 C -0.059 4.059 26 Cl 0.027 6.973 27 N -0.122 5.122 28 H 0.268 0.732 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.028 0.972 41 H 0.065 0.935 42 H 0.207 0.793 43 H 0.057 0.943 44 H 0.233 0.767 45 H 0.169 0.831 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.518 -5.673 -19.456 20.273 hybrid contribution 0.632 -0.489 1.437 1.644 sum 0.113 -6.161 -18.019 19.044 Atomic orbital electron populations 1.22266 0.94901 1.01751 1.00453 1.21458 0.95898 0.99482 0.93891 0.90289 1.21502 0.96073 1.00241 0.96251 1.21527 0.94657 1.01233 0.97619 1.21536 1.01094 0.99024 0.93378 1.21745 0.92215 1.02436 0.98987 1.20510 0.94184 0.80882 0.94102 1.21409 0.99143 0.93043 0.85930 1.42237 1.65727 1.27642 1.01223 1.19551 1.26457 1.04769 0.85619 0.91981 1.25359 1.02247 0.97965 1.00868 1.69784 1.45769 1.17484 1.28651 0.85191 0.77154 0.77372 0.80813 1.19754 1.22349 1.21746 1.45621 1.07070 1.08717 1.73692 1.16888 0.82785 0.85973 0.77118 1.90868 1.58244 1.44073 1.47475 1.20587 0.92872 0.86499 1.15406 1.21428 0.95026 0.95382 1.02754 1.20890 0.95821 0.94709 1.09130 1.21137 0.90993 0.82733 1.10989 1.98401 1.92286 1.12602 1.93982 1.41916 1.10758 1.05102 1.54389 0.73206 0.93230 0.93713 0.92807 0.92475 0.91002 0.91485 0.90235 0.90425 0.91805 0.93031 0.90437 0.97244 0.93538 0.79305 0.94307 0.76671 0.83085 0.80856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 7.28 71.98 0.52 -3.61 16 2 C -0.09 -2.29 2.07 -10.80 -0.02 -2.32 16 3 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.10 -2.03 5.04 30.60 0.15 -1.87 16 5 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 6 C -0.11 -2.13 5.75 30.59 0.18 -1.96 16 7 C -0.12 -3.17 4.70 30.61 0.14 -3.03 16 8 C 0.19 5.87 0.32 3.62 0.00 5.87 16 9 C 0.13 5.62 4.45 86.38 0.38 6.01 16 10 N -0.73 -37.49 5.15 -343.45 -1.77 -39.26 16 11 C -0.23 -13.55 9.99 84.03 0.84 -12.71 16 12 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 13 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 14 N -0.97 -59.47 13.06 21.65 0.28 -59.18 16 15 Si 0.96 48.23 29.55 68.60 2.03 50.26 16 16 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 18 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 19 N -0.70 -20.85 3.51 -426.87 -1.50 -22.35 16 20 C 0.58 20.19 5.82 86.41 0.50 20.69 16 21 O -0.53 -21.78 10.33 -4.39 -0.05 -21.82 16 22 C -0.04 -1.19 7.05 40.30 0.28 -0.91 16 23 C -0.12 -3.47 10.65 22.56 0.24 -3.23 16 24 C -0.18 -4.28 10.78 22.04 0.24 -4.04 16 25 C 0.08 1.92 7.74 83.52 0.65 2.56 16 26 Cl 0.00 -0.02 29.30 -2.72 -0.08 -0.10 16 27 N -0.52 -12.25 6.01 -174.60 -1.05 -13.30 16 28 H 0.43 7.86 8.21 -92.71 -0.76 7.10 16 29 H 0.05 1.82 5.18 -2.39 -0.01 1.81 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.72 5.13 -2.39 -0.01 1.71 16 32 H 0.06 1.16 7.60 -2.39 -0.02 1.14 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.10 6.70 -2.39 -0.02 1.08 16 38 H 0.05 1.72 7.26 -2.39 -0.02 1.70 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.05 2.21 4.27 -2.38 -0.01 2.20 16 42 H 0.37 19.92 6.54 -92.71 -0.61 19.32 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.40 9.92 6.23 -92.70 -0.58 9.34 16 45 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -70.78 365.81 1.72 -69.06 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: -0.91 Total: 40.74 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 4.76 Total: -4.04 kcal Atomic # 7 Polarization: -130.06 SS G_CDS: -4.03 Total: -134.10 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.10 kcal Total: -70.78 1.72 -69.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715134110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.553 kcal (2) G-P(sol) polarization free energy of solvation -70.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds