Wall clock time and date at job start Tue Mar 31 2020 23:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47460 * 2 1 4 4 C 1.52996 * 109.47520 * 120.00116 * 2 1 3 5 5 C 1.52996 * 109.47520 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47118 * 300.00077 * 5 4 2 7 7 C 1.52998 * 109.47322 * 59.99754 * 6 5 4 8 8 C 1.53000 * 109.47118 * 240.00193 * 2 1 3 9 9 C 1.53004 * 109.47154 * 60.00046 * 8 2 1 10 10 N 1.46495 * 109.47137 * 184.58933 * 9 8 2 11 11 C 1.36939 * 119.99884 * 185.74856 * 10 9 8 12 12 H 1.08000 * 120.00442 * 0.02562 * 11 10 9 13 13 C 1.38818 * 120.00019 * 180.02562 * 11 10 9 14 14 N 1.31621 * 119.99736 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00187 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.46929 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.46909 * 120.00092 * 15 13 11 18 18 H 1.48500 * 109.47311 * 240.00286 * 15 13 11 19 19 N 1.46499 * 109.47149 * 299.99801 * 8 2 1 20 20 C 1.34786 * 119.99562 * 74.09171 * 19 8 2 21 21 O 1.21706 * 119.99886 * 356.45140 * 20 19 8 22 22 C 1.46547 * 119.99623 * 176.44950 * 20 19 8 23 23 C 1.37930 * 126.22956 * 179.69391 * 22 20 19 24 24 C 1.39749 * 107.12062 * 179.87978 * 23 22 20 25 25 C 1.35656 * 107.88669 * 0.38261 * 24 23 22 26 26 Cl 1.73607 * 125.57760 * 179.76020 * 25 24 23 27 27 N 1.35580 * 108.85014 * 359.75910 * 25 24 23 28 28 H 0.97000 * 125.69716 * 180.02562 * 27 25 24 29 29 H 1.09008 * 109.46623 * 306.86470 * 1 2 3 30 30 H 1.08997 * 109.47390 * 66.86114 * 1 2 3 31 31 H 1.08996 * 109.47056 * 186.86776 * 1 2 3 32 32 H 1.09007 * 109.47349 * 59.99642 * 4 2 1 33 33 H 1.09004 * 109.47151 * 299.99990 * 4 2 1 34 34 H 1.09007 * 109.47257 * 180.02562 * 5 4 2 35 35 H 1.08999 * 109.47521 * 59.99971 * 5 4 2 36 36 H 1.09009 * 109.47301 * 300.00057 * 6 5 4 37 37 H 1.09004 * 109.47254 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.46584 * 59.99937 * 7 6 5 39 39 H 1.08992 * 109.47129 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.47068 * 304.59166 * 9 8 2 41 41 H 1.09001 * 109.46970 * 64.59365 * 9 8 2 42 42 H 0.96996 * 120.00077 * 5.76037 * 10 9 8 43 43 H 0.96998 * 120.00109 * 179.97438 * 14 13 11 44 44 H 0.96996 * 119.99852 * 254.09095 * 19 8 2 45 45 H 1.07994 * 126.43952 * 0.02562 * 23 22 20 46 46 H 1.07999 * 126.05756 * 180.14275 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4415 0.0002 7 6 3.5705 -0.7203 -1.2490 8 6 2.0400 -0.7212 -1.2493 9 6 1.5300 0.0001 -2.4985 10 7 1.9260 -0.7513 -3.6921 11 6 1.6822 -0.2364 -4.9374 12 1 1.1985 0.7237 -5.0396 13 6 2.0570 -0.9487 -6.0685 14 7 2.6461 -2.1191 -5.9439 15 14 1.7252 -0.2461 -7.7672 16 1 1.0578 1.0740 -7.6351 17 1 3.0096 -0.0804 -8.4937 18 1 0.8449 -1.1730 -8.5230 19 7 1.5517 -2.1024 -1.2493 20 6 0.2596 -2.3604 -1.5335 21 8 -0.5159 -1.4425 -1.7265 22 6 -0.2112 -3.7460 -1.6101 23 6 -1.4996 -4.1553 -1.8842 24 6 -1.5012 -5.5526 -1.8607 25 6 -0.2422 -5.9658 -1.5701 26 17 0.2693 -7.6181 -1.4207 27 7 0.5514 -4.8775 -1.4155 28 1 1.4979 -4.8926 -1.2037 29 1 -0.3633 0.6166 0.8223 30 1 -0.3634 0.4038 -0.9449 31 1 -0.3633 -1.0203 0.1229 32 1 1.6767 -1.7490 1.2492 33 1 1.6767 -0.2074 2.1392 34 1 3.9334 -1.2350 2.1393 35 1 3.9330 0.3071 1.2497 36 1 3.7175 -2.4694 -0.0001 37 1 5.1706 -1.4415 0.0007 38 1 3.9335 0.3075 -1.2487 39 1 3.9338 -1.2341 -2.1389 40 1 0.4431 0.0719 -2.4583 41 1 1.9590 1.0013 -2.5406 42 1 2.3606 -1.6135 -3.6003 43 1 2.9077 -2.6170 -6.7342 44 1 2.1582 -2.8312 -1.0448 45 1 -2.3472 -3.5161 -2.0823 46 1 -2.3545 -6.1903 -2.0382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715134111.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:41 Heat of formation + Delta-G solvation = 21.279057 kcal Electronic energy + Delta-G solvation = -29168.239885 eV Core-core repulsion = 25312.961993 eV Total energy + Delta-G solvation = -3855.277892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.40574 -40.36073 -37.57053 -36.75497 -34.62197 -33.32848 -32.51146 -31.51283 -30.98322 -29.59102 -28.57293 -26.36163 -25.00752 -23.19916 -22.80993 -21.21704 -20.89703 -20.46603 -20.17627 -18.93828 -18.77984 -17.13163 -16.24317 -15.86206 -15.22691 -14.86512 -14.41322 -14.33269 -14.23901 -13.99145 -13.83411 -13.63092 -13.36075 -13.05540 -12.95316 -12.76353 -12.50001 -12.28218 -11.90361 -11.78743 -11.66310 -11.50142 -11.35187 -11.34064 -11.13773 -10.87387 -10.79485 -10.74247 -10.42064 -10.07693 -9.98658 -9.68293 -9.60651 -9.38432 -9.10121 -8.68276 -8.43166 -8.07621 -6.75717 -5.69544 -2.94480 1.48724 1.58442 2.63168 3.21500 3.39814 3.47992 3.54206 3.56015 3.75349 4.65295 4.79617 4.83898 4.85741 5.01695 5.21041 5.22922 5.24787 5.30522 5.53212 5.57894 5.61523 5.66860 5.69962 5.75969 5.91356 5.98319 6.04828 6.09509 6.10593 6.19703 6.25090 6.26620 6.35177 6.38462 6.47383 6.51908 6.62512 6.67997 6.78077 6.83470 7.02145 7.13197 7.24464 7.79183 7.86650 8.50097 8.60296 9.61682 10.20481 10.55600 11.53865 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007340 B = 0.005334 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3813.963305 B = 5247.877441 C = 7534.323869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.120 4.120 8 C 0.182 3.818 9 C 0.131 3.869 10 N -0.724 5.724 11 C -0.225 4.225 12 H 0.069 0.931 13 C -0.017 4.017 14 N -0.937 5.937 15 Si 0.904 3.096 16 H -0.281 1.281 17 H -0.294 1.294 18 H -0.293 1.293 19 N -0.710 5.710 20 C 0.591 3.409 21 O -0.496 6.496 22 C -0.014 4.014 23 C -0.107 4.107 24 C -0.176 4.176 25 C 0.079 3.921 26 Cl -0.024 7.024 27 N -0.530 5.530 28 H 0.418 0.582 29 H 0.028 0.972 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.022 0.978 42 H 0.380 0.620 43 H 0.251 0.749 44 H 0.386 0.614 45 H 0.156 0.844 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 -5.812 17.099 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.158 4.158 8 C 0.097 3.903 9 C 0.003 3.997 10 N -0.368 5.368 11 C -0.356 4.356 12 H 0.086 0.914 13 C -0.212 4.212 14 N -0.586 5.586 15 Si 0.736 3.264 16 H -0.206 1.206 17 H -0.221 1.221 18 H -0.220 1.220 19 N -0.362 5.362 20 C 0.377 3.623 21 O -0.370 6.370 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.202 4.202 25 C -0.063 4.063 26 Cl 0.004 6.996 27 N -0.130 5.130 28 H 0.255 0.745 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.039 0.961 42 H 0.214 0.786 43 H 0.061 0.939 44 H 0.220 0.780 45 H 0.174 0.826 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.699 -5.099 16.861 17.697 hybrid contribution 1.027 -0.698 -0.899 1.533 sum -0.672 -5.797 15.961 16.994 Atomic orbital electron populations 1.22306 0.93741 1.02030 1.01698 1.21494 0.97029 0.99057 0.93691 0.90797 1.21555 0.94994 1.00678 0.97548 1.21556 0.95974 1.00718 0.97409 1.21566 1.00278 0.98905 0.94953 1.21805 0.93630 1.02177 0.98187 1.20657 0.93220 0.80754 0.95719 1.21354 1.00046 0.93436 0.84837 1.42193 1.72055 1.22287 1.00235 1.19262 1.31114 1.01676 0.83581 0.91352 1.24658 1.01999 0.97010 0.97560 1.69652 1.47214 1.13824 1.27957 0.86148 0.77204 0.78039 0.85051 1.20641 1.22139 1.22044 1.45770 1.09671 1.08902 1.71848 1.16626 0.82461 0.85702 0.77471 1.90850 1.55429 1.42840 1.47896 1.20789 0.92312 0.85837 1.13847 1.21239 0.95581 0.93937 1.02571 1.20615 0.94889 0.95148 1.09598 1.20923 0.91615 0.81232 1.12490 1.98386 1.91549 1.12812 1.96860 1.41992 1.11239 1.04613 1.55177 0.74453 0.95274 0.90038 0.92154 0.92313 0.92409 0.92530 0.91970 0.92779 0.91872 0.90518 0.90036 0.91813 0.96058 0.78623 0.93903 0.78042 0.82650 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.30 37.16 0.27 -1.82 16 2 C -0.09 -1.25 2.07 -90.62 -0.19 -1.44 16 3 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 4 C -0.11 -1.23 5.04 -26.74 -0.13 -1.36 16 5 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 6 C -0.12 -1.30 5.75 -26.73 -0.15 -1.45 16 7 C -0.12 -1.70 4.72 -26.70 -0.13 -1.83 16 8 C 0.18 2.81 0.32 -131.79 -0.04 2.77 16 9 C 0.13 2.68 4.39 -4.04 -0.02 2.67 16 10 N -0.72 -18.04 5.02 -59.91 -0.30 -18.34 16 11 C -0.22 -6.39 9.99 -15.06 -0.15 -6.54 16 12 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 13 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 14 N -0.94 -28.33 13.06 55.49 0.72 -27.61 16 15 Si 0.90 23.04 29.55 -169.99 -5.02 18.02 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 18 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 19 N -0.71 -10.46 3.54 -48.91 -0.17 -10.64 16 20 C 0.59 9.96 5.96 -12.91 -0.08 9.88 16 21 O -0.50 -9.63 10.21 5.18 0.05 -9.58 16 22 C -0.01 -0.21 7.06 -81.94 -0.58 -0.79 16 23 C -0.11 -1.58 10.65 -39.13 -0.42 -2.00 16 24 C -0.18 -2.27 10.78 -39.94 -0.43 -2.70 16 25 C 0.08 1.00 7.74 -16.82 -0.13 0.87 16 26 Cl -0.02 -0.26 29.30 -51.86 -1.52 -1.78 16 27 N -0.53 -6.71 6.00 -6.54 -0.04 -6.75 16 28 H 0.42 4.30 8.20 -40.82 -0.33 3.96 16 29 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.08 1.42 5.17 -51.93 -0.27 1.15 16 31 H 0.06 0.94 5.47 -51.93 -0.28 0.66 16 32 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.54 6.62 -51.92 -0.34 0.20 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.38 7.28 -51.93 -0.38 1.00 16 40 H 0.06 1.43 4.19 -51.93 -0.22 1.21 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.38 9.81 6.61 -40.82 -0.27 9.54 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.39 4.82 6.10 -40.82 -0.25 4.57 16 45 H 0.16 2.21 8.06 -52.49 -0.42 1.78 16 46 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -32.00 365.86 -9.71 -41.71 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -6.51 Total: 15.15 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.43 Total: -5.70 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.21 Total: -63.34 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.05 Total: -9.58 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.52 Total: -1.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.00 -9.71 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715134111.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.989 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds