Wall clock time and date at job start Tue Mar 31 2020 23:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46739 * 2 1 4 4 C 1.53004 * 109.47149 * 119.99661 * 2 1 3 5 5 C 1.53003 * 109.46696 * 60.00238 * 4 2 1 6 6 C 1.52995 * 109.47199 * 60.00169 * 5 4 2 7 7 C 1.53004 * 109.47158 * 299.99548 * 6 5 4 8 8 C 1.52993 * 109.47032 * 239.99881 * 2 1 3 9 9 C 1.53004 * 109.47333 * 59.99893 * 8 2 1 10 10 N 1.46498 * 109.47223 * 176.23269 * 9 8 2 11 11 C 1.36931 * 120.00033 * 175.01751 * 10 9 8 12 12 H 1.08003 * 119.99978 * 0.02562 * 11 10 9 13 13 C 1.38812 * 120.00251 * 179.97438 * 11 10 9 14 14 N 1.31623 * 119.99771 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00439 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46921 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47178 * 120.00112 * 15 13 11 18 18 H 1.48507 * 109.47202 * 240.00815 * 15 13 11 19 19 N 1.46504 * 109.46879 * 179.97438 * 8 2 1 20 20 C 1.34779 * 119.99860 * 301.91285 * 19 8 2 21 21 O 1.21711 * 120.00310 * 355.45058 * 20 19 8 22 22 C 1.46553 * 119.99651 * 175.45467 * 20 19 8 23 23 C 1.37935 * 126.22831 * 179.97438 * 22 20 19 24 24 C 1.39749 * 107.11759 * 180.02562 * 23 22 20 25 25 C 1.35656 * 107.88943 * 359.97438 * 24 23 22 26 26 Cl 1.73594 * 125.57540 * 180.02562 * 25 24 23 27 27 N 1.35578 * 108.84636 * 0.02562 * 25 24 23 28 28 H 0.97001 * 125.69439 * 180.02562 * 27 25 24 29 29 H 1.09011 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47728 * 299.99928 * 1 2 3 31 31 H 1.08997 * 109.47424 * 60.00375 * 1 2 3 32 32 H 1.09000 * 109.46684 * 300.00501 * 4 2 1 33 33 H 1.08997 * 109.46901 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46999 * 299.99541 * 5 4 2 35 35 H 1.09001 * 109.46267 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47260 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47092 * 59.99281 * 6 5 4 38 38 H 1.08999 * 109.46596 * 300.00291 * 7 6 5 39 39 H 1.08998 * 109.47387 * 180.02562 * 7 6 5 40 40 H 1.08996 * 109.46835 * 296.23301 * 9 8 2 41 41 H 1.09000 * 109.46699 * 56.23373 * 9 8 2 42 42 H 0.96999 * 119.99767 * 355.02355 * 10 9 8 43 43 H 0.97000 * 120.00050 * 179.97438 * 14 13 11 44 44 H 0.96998 * 120.00285 * 121.91689 * 19 8 2 45 45 H 1.08000 * 126.44056 * 359.97438 * 23 22 20 46 46 H 1.08002 * 126.05012 * 180.25915 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2493 6 6 2.0401 -2.8850 0.0001 7 6 1.5301 -2.1638 -1.2492 8 6 2.0400 -0.7212 -1.2492 9 6 1.5300 -0.0001 -2.4985 10 7 2.0910 -0.6363 -3.6929 11 6 1.6948 -0.2255 -4.9376 12 1 0.9690 0.5679 -5.0388 13 6 2.2267 -0.8280 -6.0694 14 7 3.1116 -1.7945 -5.9461 15 14 1.6868 -0.2670 -7.7674 16 1 0.6910 0.8265 -7.6341 17 1 2.8655 0.2270 -8.5236 18 1 1.0750 -1.4083 -8.4945 19 7 3.5050 -0.7207 -1.2495 20 6 4.1785 0.4462 -1.2108 21 8 3.5724 1.5005 -1.2593 22 6 5.6405 0.4453 -1.1105 23 6 6.4550 1.5575 -1.0623 24 6 7.7719 1.0992 -0.9694 25 6 7.7417 -0.2570 -0.9618 26 17 9.1274 -1.2976 -0.8595 27 7 6.4521 -0.6668 -1.0473 28 1 6.1509 -1.5887 -1.0611 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.6766 -0.2073 2.1392 33 1 3.1300 -0.7208 1.2495 34 1 0.4400 -2.1637 1.2493 35 1 1.8930 -2.6773 2.1396 36 1 1.6771 -3.9127 0.0003 37 1 3.1301 -2.8848 0.0001 38 1 0.4401 -2.1638 -1.2491 39 1 1.8930 -2.6778 -2.1392 40 1 0.4421 -0.0582 -2.5328 41 1 1.8372 1.0452 -2.4654 42 1 2.7430 -1.3487 -3.6020 43 1 3.4831 -2.2158 -6.7369 44 1 3.9904 -1.5600 -1.2775 45 1 6.1351 2.5886 -1.0918 46 1 8.6567 1.7157 -0.9092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715134113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:46 Heat of formation + Delta-G solvation = 4.876140 kcal Electronic energy + Delta-G solvation = -28876.755639 eV Core-core repulsion = 25020.766463 eV Total energy + Delta-G solvation = -3855.989176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42122 -40.35180 -37.77875 -36.81534 -34.75077 -33.43424 -32.11925 -31.50099 -31.01924 -29.63482 -28.85255 -26.44354 -25.06011 -23.15392 -22.75509 -22.01206 -20.99442 -20.42340 -20.17321 -19.00321 -18.07851 -17.13786 -16.28703 -15.71320 -15.39297 -15.19553 -14.51104 -14.35691 -14.21332 -14.05378 -13.76695 -13.58536 -13.25419 -13.04398 -13.00351 -12.79810 -12.67372 -12.39250 -12.23081 -12.01567 -11.80273 -11.49972 -11.43817 -11.40290 -11.15691 -10.95200 -10.82108 -10.76086 -10.31253 -10.12089 -10.07834 -9.93445 -9.65390 -9.38033 -9.18739 -8.77270 -8.61059 -8.16199 -6.82488 -5.73499 -2.99032 1.39877 1.51635 2.54530 3.14816 3.35125 3.45798 3.52112 3.53898 3.63447 4.61915 4.73261 4.84059 4.87303 4.99202 5.14725 5.21954 5.24032 5.28688 5.47751 5.50129 5.62552 5.65036 5.73385 5.76639 5.79315 5.83917 5.98100 6.02484 6.04858 6.13851 6.17930 6.18895 6.28916 6.40888 6.42208 6.48547 6.52310 6.57889 6.68726 6.72553 6.92376 7.05063 7.11295 7.75589 7.80271 8.46334 8.49168 9.57916 10.16155 10.51394 11.50001 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007570 B = 0.004902 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3697.959249 B = 5710.058730 C = 8034.281918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.122 4.122 8 C 0.184 3.816 9 C 0.140 3.860 10 N -0.726 5.726 11 C -0.228 4.228 12 H 0.069 0.931 13 C -0.016 4.016 14 N -0.937 5.937 15 Si 0.904 3.096 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.293 1.293 19 N -0.708 5.708 20 C 0.596 3.404 21 O -0.515 6.515 22 C -0.019 4.019 23 C -0.106 4.106 24 C -0.177 4.177 25 C 0.081 3.919 26 Cl -0.022 7.022 27 N -0.529 5.529 28 H 0.419 0.581 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.029 0.971 41 H 0.043 0.957 42 H 0.380 0.620 43 H 0.252 0.748 44 H 0.389 0.611 45 H 0.156 0.844 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -1.259 17.580 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.160 4.160 8 C 0.099 3.901 9 C 0.012 3.988 10 N -0.370 5.370 11 C -0.359 4.359 12 H 0.087 0.913 13 C -0.212 4.212 14 N -0.587 5.587 15 Si 0.736 3.264 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.220 1.220 19 N -0.358 5.358 20 C 0.382 3.618 21 O -0.390 6.390 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.203 4.203 25 C -0.061 4.061 26 Cl 0.006 6.994 27 N -0.129 5.129 28 H 0.257 0.743 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.214 0.786 43 H 0.062 0.938 44 H 0.223 0.777 45 H 0.174 0.826 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.883 -0.635 17.428 18.110 hybrid contribution 0.401 -1.118 -1.171 1.668 sum 5.283 -1.752 16.256 17.183 Atomic orbital electron populations 1.21960 0.94817 1.01916 1.01832 1.21434 0.96034 1.01126 0.93355 0.89037 1.21495 1.00327 0.95358 0.97459 1.21577 1.01060 0.95761 0.97327 1.21547 1.00170 0.98958 0.94913 1.21827 1.02002 0.93981 0.98171 1.20585 0.78007 0.95889 0.95648 1.21184 0.95892 0.96639 0.85129 1.42218 1.51159 1.43292 1.00297 1.19280 1.18755 1.14307 0.83583 0.91283 1.24667 0.99759 0.99110 0.97625 1.69650 1.33222 1.27795 1.28039 0.86138 0.77669 0.77659 0.84914 1.20594 1.22016 1.22039 1.45832 1.07461 1.07473 1.75045 1.16755 0.83993 0.84485 0.76567 1.90799 1.67538 1.31059 1.49600 1.20745 0.91129 0.86155 1.15218 1.21260 0.90902 0.98225 1.02848 1.20630 0.98443 0.90702 1.10542 1.20953 0.80885 0.91204 1.13059 1.98392 1.36714 1.67174 1.97074 1.42005 1.04760 1.09166 1.56995 0.74270 0.92270 0.93042 0.91888 0.92403 0.92500 0.91617 0.92685 0.91960 0.92745 0.90074 0.90162 0.95343 0.93904 0.78649 0.93826 0.77745 0.82590 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.15 37.16 0.30 -1.56 16 2 C -0.10 -1.38 2.01 -90.62 -0.18 -1.57 16 3 H 0.09 1.49 6.18 -51.93 -0.32 1.17 16 4 C -0.11 -1.26 5.29 -26.73 -0.14 -1.40 16 5 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 6 C -0.12 -1.30 5.75 -26.73 -0.15 -1.46 16 7 C -0.12 -1.73 4.36 -26.73 -0.12 -1.84 16 8 C 0.18 2.88 0.09 -131.82 -0.01 2.87 16 9 C 0.14 2.88 4.45 -4.04 -0.02 2.86 16 10 N -0.73 -18.09 5.12 -59.91 -0.31 -18.40 16 11 C -0.23 -6.45 9.99 -15.06 -0.15 -6.60 16 12 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 13 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 14 N -0.94 -28.15 13.06 55.49 0.72 -27.42 16 15 Si 0.90 22.89 29.55 -169.99 -5.02 17.86 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 N -0.71 -10.67 3.44 -48.94 -0.17 -10.84 16 20 C 0.60 10.05 7.19 -12.91 -0.09 9.96 16 21 O -0.51 -10.22 13.15 5.18 0.07 -10.15 16 22 C -0.02 -0.27 7.06 -81.93 -0.58 -0.85 16 23 C -0.11 -1.49 10.65 -39.13 -0.42 -1.90 16 24 C -0.18 -2.15 10.78 -39.94 -0.43 -2.58 16 25 C 0.08 0.97 7.74 -16.82 -0.13 0.84 16 26 Cl -0.02 -0.22 29.30 -51.86 -1.52 -1.74 16 27 N -0.53 -6.46 6.00 -6.55 -0.04 -6.50 16 28 H 0.42 4.20 8.20 -40.82 -0.33 3.87 16 29 H 0.06 0.69 4.81 -51.92 -0.25 0.44 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.87 6.52 -51.93 -0.34 0.53 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.69 7.61 -51.93 -0.39 0.29 16 34 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.56 6.90 -51.93 -0.36 0.20 16 38 H 0.08 1.14 6.43 -51.93 -0.33 0.81 16 39 H 0.08 1.34 7.21 -51.93 -0.37 0.96 16 40 H 0.03 0.59 6.64 -51.93 -0.34 0.25 16 41 H 0.04 1.00 6.26 -51.93 -0.33 0.68 16 42 H 0.38 9.71 6.57 -40.82 -0.27 9.45 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.39 5.10 6.53 -40.82 -0.27 4.83 16 45 H 0.16 2.08 8.06 -52.49 -0.42 1.65 16 46 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -32.33 366.71 -9.43 -41.76 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -6.33 Total: 15.08 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.37 Total: -5.18 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: 0.21 Total: -63.15 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.33 -9.43 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715134113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.634 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds